Wall clock time and date at job start Wed Apr 1 2020 00:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81395 * 102.99981 * 2 1 4 4 C 1.53001 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.87112 * 180.34224 * 4 3 2 6 6 C 1.54316 * 109.88433 * 59.32424 * 4 3 2 7 7 C 1.55152 * 102.94593 * 218.23493 * 6 4 3 8 8 C 1.54915 * 101.58017 * 35.50295 * 7 6 4 9 9 N 1.47295 * 109.99895 * 301.40054 * 4 3 2 10 10 S 1.65595 * 125.79345 * 298.43080 * 9 4 3 11 11 O 1.42095 * 106.40517 * 22.29843 * 10 9 4 12 12 O 1.42098 * 106.39843 * 155.22122 * 10 9 4 13 13 C 1.76205 * 107.21681 * 268.75970 * 10 9 4 14 14 C 1.38664 * 119.87533 * 269.72661 * 13 10 9 15 15 C 1.38610 * 120.50086 * 179.72000 * 14 13 10 16 16 C 1.37645 * 120.24763 * 0.55649 * 15 14 13 17 17 C 1.40697 * 119.74208 * 359.72664 * 16 15 14 18 18 C 1.41399 * 120.24193 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00228 * 203.14016 * 18 17 16 20 20 C 1.39942 * 119.99755 * 23.14365 * 18 17 16 21 21 N 1.30828 * 120.00292 * 17.07088 * 20 18 17 22 22 Si 1.86800 * 119.99977 * 197.06817 * 20 18 17 23 23 H 1.48501 * 109.47042 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47254 * 119.99884 * 22 20 18 25 25 H 1.48504 * 109.47429 * 240.00292 * 22 20 18 26 26 C 1.37597 * 119.87871 * 90.00249 * 13 10 9 27 27 H 1.08993 * 109.47477 * 60.00133 * 1 2 3 28 28 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47195 * 299.99509 * 1 2 3 30 30 H 1.09001 * 109.47333 * 59.99886 * 3 2 1 31 31 H 1.09004 * 109.47202 * 300.00039 * 3 2 1 32 32 H 1.09000 * 110.71899 * 99.86997 * 6 4 3 33 33 H 1.09000 * 110.87477 * 336.67181 * 6 4 3 34 34 H 1.08994 * 111.00712 * 277.42734 * 7 6 4 35 35 H 1.08996 * 111.03889 * 153.58784 * 7 6 4 36 36 H 1.09002 * 110.36577 * 81.82862 * 8 7 6 37 37 H 1.08993 * 110.36557 * 204.04144 * 8 7 6 38 38 H 1.08000 * 119.74683 * 359.97438 * 14 13 10 39 39 H 1.08000 * 119.87400 * 180.27949 * 15 14 13 40 40 H 1.07995 * 120.12592 * 179.74199 * 16 15 14 41 41 H 0.96996 * 119.99846 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.12344 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 3.9949 3.0003 0.0055 6 6 4.3467 1.2636 -1.2491 7 6 5.6605 0.6421 -0.7060 8 6 5.2360 0.2159 0.7216 9 7 4.3246 1.2801 1.1805 10 16 4.0100 1.6669 2.7595 11 8 2.7544 2.3321 2.7672 12 8 4.2737 0.4957 3.5197 13 6 5.2085 2.8606 3.2528 14 6 6.4068 2.4454 3.8135 15 6 7.3611 3.3731 4.2008 16 6 7.1234 4.7196 4.0429 17 6 5.9086 5.1527 3.4805 18 6 5.6531 6.5334 3.3139 19 1 4.6359 6.8901 3.2465 20 6 6.7183 7.4376 3.2363 21 7 7.9266 7.0049 2.9824 22 14 6.4150 9.2626 3.4951 23 1 4.9729 9.4911 3.7660 24 1 7.2167 9.7386 4.6509 25 1 6.8142 10.0088 2.2748 26 6 4.9494 4.2016 3.0855 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8031 2.2371 0.8900 31 1 1.8031 2.2371 -0.8900 32 1 4.5600 2.0017 -2.0223 33 1 3.6824 0.4883 -1.6308 34 1 6.4584 1.3838 -0.6712 35 1 5.9590 -0.2222 -1.2991 36 1 4.7166 -0.7420 0.6928 37 1 6.1069 0.1550 1.3740 38 1 6.5997 1.3910 3.9456 39 1 8.2929 3.0382 4.6323 40 1 7.8666 5.4408 4.3492 41 1 8.6648 7.6318 2.9282 42 1 4.0137 4.5230 2.6524 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:26 Heat of formation + Delta-G solvation = -74.179141 kcal Electronic energy + Delta-G solvation = -25983.002605 eV Core-core repulsion = 22372.944588 eV Total energy + Delta-G solvation = -3610.058017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.68784 -39.47063 -38.31084 -36.91828 -35.70201 -32.44178 -31.94386 -31.86169 -31.58297 -29.74890 -27.37667 -26.70384 -23.71131 -22.93124 -22.83880 -22.04960 -20.28737 -19.38452 -18.69500 -17.83735 -17.40132 -16.83848 -16.77605 -16.56535 -16.33125 -15.51371 -15.29296 -15.08890 -14.92200 -14.74289 -14.53003 -14.33798 -14.17860 -13.92247 -13.71844 -13.39229 -13.34687 -13.10176 -13.08216 -13.01278 -12.82256 -12.71258 -12.62684 -12.49893 -12.21717 -12.02504 -11.97699 -11.59721 -11.56858 -11.37140 -11.17129 -10.80642 -10.05996 -9.82876 -9.59893 -8.74378 -8.56706 -6.47771 -0.57818 0.37968 0.77681 0.80981 1.36807 1.43798 1.51888 1.70932 2.07909 2.16435 2.55394 2.77055 3.23321 3.47679 3.60217 3.73937 3.99492 4.21861 4.25867 4.29441 4.34720 4.37694 4.39716 4.44656 4.57803 4.69033 4.80357 4.87908 4.89885 4.95995 4.99326 5.05514 5.07806 5.11934 5.18025 5.23990 5.37650 5.45148 5.52432 5.56592 5.86349 5.91710 6.07237 6.50236 6.77399 6.82028 8.22541 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.003640 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.021932 B = 7690.466555 C = 8061.979868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.280 6.280 3 C -0.116 4.116 4 C 0.159 3.841 5 H 0.085 0.915 6 C -0.118 4.118 7 C -0.121 4.121 8 C 0.113 3.887 9 N -1.000 6.000 10 S 2.727 3.273 11 O -0.983 6.983 12 O -0.986 6.986 13 C -0.642 4.642 14 C -0.154 4.154 15 C -0.121 4.121 16 C -0.143 4.143 17 C 0.063 3.937 18 C -0.494 4.494 19 H 0.079 0.921 20 C 0.038 3.962 21 N -0.819 5.819 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.262 1.262 26 C -0.144 4.144 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.293 0.707 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 -9.093 -10.713 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.056 6.056 3 C -0.266 4.266 4 C 0.052 3.948 5 H 0.103 0.897 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.011 4.011 9 N -0.839 5.839 10 S 2.822 3.178 11 O -0.973 6.973 12 O -0.976 6.976 13 C -0.730 4.730 14 C -0.175 4.175 15 C -0.140 4.140 16 C -0.163 4.163 17 C 0.060 3.940 18 C -0.523 4.523 19 H 0.097 0.903 20 C -0.177 4.177 21 N -0.445 5.445 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.166 4.166 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.566 -10.217 -10.143 15.435 hybrid contribution -0.209 2.468 0.516 2.530 sum -5.775 -7.749 -9.626 13.641 Atomic orbital electron populations 1.23481 0.92676 1.07386 1.05506 1.86787 1.09206 1.11633 1.97953 1.24314 0.99879 0.95108 1.07293 1.21365 0.89705 0.97669 0.86052 0.89678 1.22798 0.96901 1.01195 0.94785 1.22765 0.97296 1.02073 0.93806 1.22217 0.91952 0.89808 0.97126 1.58466 1.58683 1.46013 1.20700 1.00544 0.73065 0.72566 0.71612 1.93428 1.40787 1.76787 1.86322 1.93471 1.86403 1.48237 1.69519 1.30402 1.15171 1.11067 1.16381 1.20426 0.93333 0.98935 1.04812 1.21145 0.98910 0.93357 1.00637 1.21725 0.99037 0.95126 1.00431 1.18051 0.92168 0.93855 0.89923 1.19892 0.94884 0.91761 1.45755 0.90312 1.26746 0.93851 1.06257 0.90888 1.69807 1.01807 1.39519 1.33320 0.85135 0.79843 0.75476 0.79194 1.18364 1.18729 1.18650 1.20810 1.00204 0.91242 1.04304 0.88810 0.86830 0.91123 0.89416 0.86438 0.88195 0.88312 0.90924 0.87322 0.90442 0.91099 0.85646 0.85535 0.86375 0.89652 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 10.76 113.37 1.22 -0.97 16 2 S -0.28 -6.77 20.33 -56.49 -1.15 -7.92 16 3 C -0.12 -2.92 5.54 71.98 0.40 -2.52 16 4 C 0.16 4.13 3.36 45.29 0.15 4.28 16 5 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 6 C -0.12 -2.19 6.25 31.78 0.20 -1.99 16 7 C -0.12 -2.30 7.09 31.99 0.23 -2.07 16 8 C 0.11 2.89 6.99 86.86 0.61 3.50 16 9 N -1.00 -31.06 2.93 -483.67 -1.42 -32.48 16 10 S 2.73 108.19 5.89 -56.49 -0.33 107.85 16 11 O -0.98 -41.72 14.47 -128.00 -1.85 -43.57 16 12 O -0.99 -42.29 16.86 -128.00 -2.16 -44.45 16 13 C -0.64 -29.16 5.97 22.22 0.13 -29.02 16 14 C -0.15 -6.87 9.53 22.46 0.21 -6.66 16 15 C -0.12 -5.55 10.02 22.22 0.22 -5.32 16 16 C -0.14 -7.37 8.71 22.73 0.20 -7.17 16 17 C 0.06 3.39 5.59 -21.29 -0.12 3.27 16 18 C -0.49 -26.05 9.06 23.46 0.21 -25.84 16 19 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 20 C 0.04 1.85 5.17 85.26 0.44 2.30 16 21 N -0.82 -40.56 10.82 21.83 0.24 -40.32 16 22 Si 0.98 36.64 29.59 68.60 2.03 38.67 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 26 C -0.14 -7.21 9.26 22.73 0.21 -7.00 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 2.69 5.83 -2.39 -0.01 2.68 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.71 6.52 -2.39 -0.02 1.70 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.13 4.98 7.59 -2.91 -0.02 4.96 16 39 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.12 6.20 6.03 -2.91 -0.02 6.18 16 41 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 42 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -65.56 364.76 0.69 -64.87 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 1.02 Total: 32.56 kcal Atomic # 6 Polarization: -79.53 SS G_CDS: 4.31 Total: -75.22 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.18 Total: -72.80 kcal Atomic # 8 Polarization: -84.02 SS G_CDS: -4.01 Total: -88.03 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 16 Polarization: 101.42 SS G_CDS: -1.48 Total: 99.94 kcal Total: -65.56 0.69 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.314 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds