Wall clock time and date at job start Tue Mar 31 2020 22:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 108.64513 * 2 1 4 4 C 1.49611 * 108.68882 * 117.98500 * 2 1 3 5 5 S 1.83010 * 110.33778 * 210.21277 * 4 2 1 6 6 C 1.74753 * 104.46002 * 285.63913 * 5 4 2 7 7 C 1.53966 * 112.57198 * 61.07525 * 6 5 4 8 8 N 1.42848 * 108.11665 * 279.21676 * 7 6 5 9 9 S 1.65610 * 119.02460 * 275.76775 * 8 7 6 10 10 O 1.42100 * 106.40079 * 23.51731 * 9 8 7 11 11 O 1.42091 * 106.40013 * 156.43603 * 9 8 7 12 12 C 1.76201 * 107.21719 * 269.97909 * 9 8 7 13 13 C 1.38656 * 119.87390 * 90.00224 * 12 9 8 14 14 C 1.38614 * 120.49306 * 179.97438 * 13 12 9 15 15 C 1.37634 * 120.25509 * 0.02562 * 14 13 12 16 16 C 1.40692 * 119.74106 * 359.97438 * 15 14 13 17 17 C 1.41398 * 120.24403 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00207 * 204.38879 * 17 16 15 19 19 C 1.39941 * 119.99871 * 24.38258 * 17 16 15 20 20 N 1.30828 * 120.00199 * 17.86243 * 19 17 16 21 21 Si 1.86800 * 120.00241 * 197.85738 * 19 17 16 22 22 H 1.48504 * 109.47093 * 94.69179 * 21 19 17 23 23 H 1.48503 * 109.47577 * 214.69643 * 21 19 17 24 24 H 1.48504 * 109.46943 * 334.69526 * 21 19 17 25 25 C 1.37594 * 119.87000 * 269.72282 * 12 9 8 26 26 C 1.47197 * 121.94728 * 95.74318 * 8 7 6 27 27 H 1.09002 * 109.47069 * 178.10373 * 1 2 3 28 28 H 1.09001 * 109.46766 * 58.11303 * 1 2 3 29 29 H 1.08997 * 109.47542 * 298.10811 * 1 2 3 30 30 H 1.09006 * 109.32345 * 330.47403 * 4 2 1 31 31 H 1.09000 * 109.32658 * 89.94592 * 4 2 1 32 32 H 1.08999 * 108.86683 * 300.27904 * 6 5 4 33 33 H 1.08999 * 108.86064 * 181.87105 * 6 5 4 34 34 H 1.09001 * 109.73418 * 159.55557 * 7 6 5 35 35 H 1.09005 * 109.73269 * 38.86495 * 7 6 5 36 36 H 1.07996 * 119.75409 * 359.94802 * 13 12 9 37 37 H 1.08010 * 119.87008 * 180.02562 * 14 13 12 38 38 H 1.08000 * 120.12798 * 179.97438 * 15 14 13 39 39 H 0.96997 * 119.99961 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.13160 * 0.02562 * 25 12 9 41 41 H 1.09001 * 108.18580 * 195.35104 * 26 8 7 42 42 H 1.09005 * 108.02282 * 78.60605 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8784 1.0328 0.0000 4 6 2.0094 -0.6650 1.2515 5 16 3.6179 0.0378 1.7692 6 6 4.7709 -0.6337 0.6407 7 6 4.4747 -0.2324 -0.8160 8 7 3.4446 -1.0888 -1.3119 9 16 3.8573 -2.5719 -1.9224 10 8 5.1050 -2.9145 -1.3349 11 8 2.6981 -3.3866 -1.8153 12 6 4.1598 -2.3610 -3.6454 13 6 5.4363 -2.0512 -4.0896 14 6 5.6888 -1.8829 -5.4421 15 6 4.6724 -2.0215 -6.3598 16 6 3.3733 -2.3356 -5.9204 17 6 2.3213 -2.4809 -6.8540 18 1 1.2984 -2.3291 -6.5428 19 6 2.6058 -2.8213 -8.1813 20 7 3.7664 -3.3409 -8.4890 21 14 1.3284 -2.5339 -9.5136 22 1 1.5766 -1.2214 -10.1625 23 1 1.4206 -3.6136 -10.5290 24 1 -0.0277 -2.5382 -8.9083 25 6 3.1297 -2.5099 -4.5453 26 6 2.0271 -0.6923 -1.2960 27 1 -0.3633 -1.0271 -0.0340 28 1 -0.3633 0.5429 -0.8726 29 1 -0.3634 0.4841 0.9064 30 1 1.2771 -0.5123 2.0444 31 1 2.1240 -1.7338 1.0709 32 1 4.7480 -1.7207 0.7183 33 1 5.7686 -0.2843 0.9065 34 1 5.3741 -0.3502 -1.4203 35 1 4.1399 0.8044 -0.8513 36 1 6.2396 -1.9398 -3.3765 37 1 6.6870 -1.6422 -5.7771 38 1 4.8714 -1.8895 -7.4131 39 1 3.9634 -3.5771 -9.4089 40 1 2.1371 -2.7552 -4.1974 41 1 1.4224 -1.5845 -1.4584 42 1 1.8576 -0.0126 -2.1311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499484.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:47 Heat of formation + Delta-G solvation = -78.415471 kcal Electronic energy + Delta-G solvation = -26048.770529 eV Core-core repulsion = 22438.528812 eV Total energy + Delta-G solvation = -3610.241718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 16.81 seconds Orbital eigenvalues (eV) -39.48679 -39.13666 -38.48802 -37.00480 -35.72303 -35.69642 -31.95548 -31.77781 -31.53205 -28.20508 -27.39709 -26.99721 -24.45099 -23.68248 -22.83742 -21.20442 -20.30812 -19.51259 -18.81311 -17.85544 -17.55211 -17.37250 -17.00821 -16.57503 -16.33320 -16.15570 -15.45811 -15.27786 -15.05431 -14.68561 -14.37146 -14.33767 -14.10987 -13.75469 -13.56085 -13.37977 -13.33482 -13.30123 -13.13265 -13.10495 -13.01403 -12.87331 -12.61139 -12.58504 -12.23007 -12.21013 -11.86800 -11.61204 -11.54420 -11.35606 -11.16839 -10.75287 -10.16101 -9.88451 -9.60172 -8.75638 -8.62704 -6.48335 -0.65778 0.35402 0.80405 0.81971 1.36777 1.44947 1.50723 1.64349 1.95788 2.16471 2.51344 2.65544 3.22940 3.44310 3.54926 3.75902 3.79641 3.94747 4.10104 4.16653 4.26186 4.38628 4.43770 4.50991 4.61798 4.64774 4.73501 4.78332 4.80040 4.86534 4.88594 5.01291 5.06243 5.09844 5.17278 5.25997 5.36977 5.43699 5.51529 5.65171 5.84845 5.90329 6.06666 6.49278 6.76950 6.81089 8.22632 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.003509 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.375209 B = 7977.955735 C = 8889.944079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.099 0.901 4 C -0.078 4.078 5 S -0.233 6.233 6 C -0.144 4.144 7 C 0.122 3.878 8 N -0.982 5.982 9 S 2.703 3.297 10 O -0.979 6.979 11 O -0.990 6.990 12 C -0.638 4.638 13 C -0.150 4.150 14 C -0.122 4.122 15 C -0.140 4.140 16 C 0.064 3.936 17 C -0.496 4.496 18 H 0.082 0.918 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.985 3.015 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.146 4.146 26 C 0.102 3.898 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 9.625 13.012 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.225 4.225 5 S -0.005 6.005 6 C -0.294 4.294 7 C -0.006 4.006 8 N -0.819 5.819 9 S 2.798 3.202 10 O -0.969 6.969 11 O -0.981 6.981 12 C -0.727 4.727 13 C -0.170 4.170 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.060 3.940 17 C -0.525 4.525 18 H 0.100 0.900 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.167 4.167 26 C -0.023 4.023 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.733 9.414 14.150 17.214 hybrid contribution -0.230 -1.011 -2.618 2.816 sum -2.963 8.402 11.532 14.573 Atomic orbital electron populations 1.21903 0.91865 1.02776 1.03742 1.21396 0.97789 1.00749 0.91039 0.88326 1.23231 0.95863 1.01894 1.01554 1.85587 1.04249 1.66176 1.44460 1.23492 1.03248 1.04082 0.98604 1.21286 0.90441 0.96717 0.92147 1.56604 1.13712 1.36051 1.75572 1.01378 0.72302 0.72934 0.73566 1.93492 1.44619 1.82223 1.76558 1.93476 1.51050 1.66386 1.87169 1.30240 1.01353 1.17636 1.23510 1.20462 0.94258 1.06017 0.96310 1.21157 0.98834 1.00804 0.93335 1.21669 0.93731 1.01274 0.99347 1.18043 0.93959 0.89793 0.92159 1.19896 0.94806 1.43350 0.94489 0.89974 1.26796 0.98469 0.90993 1.01685 1.69824 1.24408 1.28698 1.22040 0.85136 0.78508 0.79181 0.76618 1.18318 1.19321 1.18055 1.20811 0.97061 1.05113 0.93729 1.22169 0.78527 1.01811 0.99762 0.92514 0.91225 0.90008 0.85224 0.91473 0.91362 0.85083 0.89056 0.86393 0.85065 0.85452 0.86799 0.89698 0.87231 0.90122 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.86 71.98 0.64 -1.34 16 2 C -0.09 -1.53 2.41 -11.16 -0.03 -1.56 16 3 H 0.10 1.55 7.78 -2.39 -0.02 1.53 16 4 C -0.08 -1.45 5.52 70.90 0.39 -1.06 16 5 S -0.23 -4.80 21.48 -56.49 -1.21 -6.01 16 6 C -0.14 -3.26 5.72 72.31 0.41 -2.84 16 7 C 0.12 2.80 5.28 87.38 0.46 3.26 16 8 N -0.98 -27.10 2.73 -516.70 -1.41 -28.51 16 9 S 2.70 99.78 5.46 -56.49 -0.31 99.48 16 10 O -0.98 -38.01 15.10 -128.00 -1.93 -39.95 16 11 O -0.99 -41.32 15.63 -128.00 -2.00 -43.33 16 12 C -0.64 -27.66 5.97 22.22 0.13 -27.53 16 13 C -0.15 -6.30 9.53 22.46 0.21 -6.09 16 14 C -0.12 -5.39 10.02 22.22 0.22 -5.16 16 15 C -0.14 -7.07 8.70 22.73 0.20 -6.87 16 16 C 0.06 3.35 5.58 -21.29 -0.12 3.23 16 17 C -0.50 -25.88 9.05 23.46 0.21 -25.67 16 18 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 19 C 0.04 1.75 5.14 85.26 0.44 2.19 16 20 N -0.82 -41.53 10.95 21.83 0.24 -41.29 16 21 Si 0.99 36.51 29.59 68.60 2.03 38.54 16 22 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 23 H -0.27 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 C -0.15 -7.11 9.26 22.73 0.21 -6.90 16 26 C 0.10 2.43 5.46 86.97 0.48 2.90 16 27 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.84 7.95 -2.39 -0.02 0.82 16 30 H 0.13 1.83 7.61 -2.38 -0.02 1.82 16 31 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 32 H 0.07 1.86 6.84 -4.12 -0.03 1.83 16 33 H 0.13 2.52 8.14 -4.12 -0.03 2.48 16 34 H 0.09 2.07 7.86 -2.39 -0.02 2.05 16 35 H 0.12 2.16 7.92 -2.38 -0.02 2.15 16 36 H 0.13 4.77 7.60 -2.91 -0.02 4.75 16 37 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 38 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 39 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 40 H 0.11 5.17 7.60 -2.91 -0.02 5.15 16 41 H 0.08 2.17 6.44 -2.39 -0.02 2.15 16 42 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -63.86 357.27 0.26 -63.60 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 1.00 Total: 30.91 kcal Atomic # 6 Polarization: -77.30 SS G_CDS: 3.86 Total: -73.44 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.17 Total: -69.80 kcal Atomic # 8 Polarization: -79.34 SS G_CDS: -3.93 Total: -83.27 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 16 Polarization: 94.99 SS G_CDS: -1.52 Total: 93.46 kcal Total: -63.86 0.26 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499484.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.819 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.82 seconds