Wall clock time and date at job start Tue Mar 31 2020 23:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34716 * 116.99776 * 269.99909 * 4 2 1 6 6 O 1.21474 * 120.00471 * 0.02562 * 5 4 2 7 7 C 1.47683 * 119.99495 * 179.97438 * 5 4 2 8 8 C 1.39602 * 120.51990 * 0.02562 * 7 5 4 9 9 N 1.31662 * 120.73520 * 179.97438 * 8 7 5 10 10 C 1.31977 * 121.95002 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 119.52209 * 179.97438 * 10 9 8 12 12 C 1.39181 * 120.96239 * 0.02562 * 10 9 8 13 13 N 1.39814 * 120.42606 * 179.97438 * 12 10 9 14 14 C 1.38920 * 119.14973 * 359.67786 * 12 10 9 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99905 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00302 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47082 * 89.99861 * 24 22 20 26 26 H 1.48492 * 109.47090 * 210.00394 * 24 22 20 27 27 H 1.48499 * 109.46812 * 330.00449 * 24 22 20 28 28 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 29 29 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 31 31 H 1.07999 * 119.62909 * 0.02562 * 8 7 5 32 32 H 0.96994 * 120.00306 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00041 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.88691 * 180.29296 * 14 12 10 35 35 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 36 36 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 37 37 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 40 40 H 0.96998 * 119.99775 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0667 2.2850 6 8 1.9970 1.2608 2.2544 7 6 2.7090 -0.5617 3.5279 8 6 2.9660 -1.9331 3.5753 9 7 3.4044 -2.4977 4.6810 10 6 3.6193 -1.8028 5.7823 11 17 4.1974 -2.6120 7.2052 12 6 3.3883 -0.4309 5.8198 13 7 3.6193 0.2942 6.9927 14 6 2.9312 0.2099 4.6751 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 5.5461 -0.4512 -5.3625 24 14 3.5361 -2.1915 -6.1418 25 1 2.7676 -1.5350 -7.2298 26 1 4.5841 -3.0625 -6.7319 27 1 2.6177 -3.0136 -5.3136 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.8041 -2.5374 2.6950 32 1 3.9429 -0.1586 7.7870 33 1 3.4565 1.2503 7.0119 34 1 2.7471 1.2742 4.6715 35 1 -0.0212 0.8370 -2.6727 36 1 1.2123 1.6773 -1.7029 37 1 1.3786 1.5909 -3.4731 38 1 2.3218 -1.9546 -3.4611 39 1 1.6162 -0.6807 -4.4846 40 1 6.0188 -0.8070 -6.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767105573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:03 Heat of formation + Delta-G solvation = -74.602899 kcal Electronic energy + Delta-G solvation = -26730.003916 eV Core-core repulsion = 22571.590603 eV Total energy + Delta-G solvation = -4158.413313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18895 -40.24976 -39.00513 -37.07669 -36.54239 -35.73823 -35.07043 -32.99945 -32.58953 -31.60772 -29.58554 -28.34050 -26.36469 -25.66667 -24.21293 -23.80512 -22.35328 -21.05963 -19.00651 -18.70123 -18.14944 -17.58794 -17.00092 -16.92421 -16.56239 -16.21518 -15.87438 -15.38250 -15.25971 -15.05141 -14.75849 -14.02624 -13.79145 -13.58711 -13.52139 -13.17596 -13.04934 -12.46812 -12.37108 -12.30043 -12.14467 -11.93777 -11.86064 -11.79781 -11.64348 -11.48326 -11.03176 -10.97891 -10.81791 -10.54664 -10.13606 -10.04442 -10.01169 -9.57852 -9.06662 -8.61840 -8.27098 -7.83004 -6.11021 -4.10735 0.01582 0.85494 1.37582 2.16906 2.25122 3.12582 3.13917 3.25660 3.33116 3.34501 3.38166 3.68387 4.05320 4.29904 4.37659 4.44926 4.48611 4.68423 4.77619 4.86568 4.98702 5.09310 5.22068 5.40907 5.52749 5.56338 5.60733 5.73956 5.90343 5.92959 6.13009 6.21183 6.58035 6.62162 6.90236 7.06193 7.19633 7.31464 7.51133 7.56461 8.06775 8.42195 8.78194 8.92205 9.48245 11.02272 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002377 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.383673 B =11779.156457 C =12593.799173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.072 3.928 3 H 0.110 0.890 4 O -0.317 6.317 5 C 0.516 3.484 6 O -0.500 6.500 7 C -0.119 4.119 8 C 0.125 3.875 9 N -0.441 5.441 10 C 0.126 3.874 11 Cl -0.028 7.028 12 C 0.177 3.823 13 N -0.861 5.861 14 C -0.082 4.082 15 C 0.511 3.489 16 O -0.516 6.516 17 N -0.591 5.591 18 C 0.075 3.925 19 C 0.217 3.783 20 C -0.532 4.532 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.875 3.125 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.263 1.263 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.185 0.815 32 H 0.406 0.594 33 H 0.407 0.593 34 H 0.159 0.841 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.030 0.970 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 3.430 23.916 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.128 0.872 4 O -0.232 6.232 5 C 0.359 3.641 6 O -0.389 6.389 7 C -0.123 4.123 8 C -0.035 4.035 9 N -0.150 5.150 10 C -0.043 4.043 11 Cl 0.000 7.000 12 C 0.067 3.933 13 N -0.403 5.403 14 C -0.112 4.112 15 C 0.296 3.704 16 O -0.391 6.391 17 N -0.324 5.324 18 C -0.069 4.069 19 C 0.097 3.903 20 C -0.571 4.571 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.202 0.798 32 H 0.236 0.764 33 H 0.236 0.764 34 H 0.176 0.824 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.492 2.203 23.903 25.813 hybrid contribution -0.231 0.637 -0.285 0.735 sum -9.723 2.840 23.618 25.698 Atomic orbital electron populations 1.22301 0.92085 1.04211 1.04225 1.22663 0.95826 0.97752 0.82363 0.87248 1.86635 1.76449 1.40768 1.19301 1.20772 0.74514 0.84975 0.83810 1.90828 1.48142 1.15633 1.84322 1.19955 1.04760 0.95415 0.92175 1.23018 0.93898 0.91357 0.95269 1.66971 1.10915 1.39036 0.98097 1.21363 1.04375 0.87578 0.91011 1.98393 1.86666 1.80301 1.34594 1.18026 0.96499 0.89961 0.88774 1.42451 1.75694 1.11224 1.10910 1.21088 0.99466 1.01245 0.89432 1.19722 0.81020 0.85947 0.83744 1.90717 1.39283 1.23393 1.85689 1.47726 1.54210 1.24131 1.06355 1.21889 0.95205 0.86493 1.03293 1.19731 0.95263 0.94072 0.81221 1.21311 0.99105 1.24305 1.12352 0.90738 1.24859 0.94695 0.96213 0.97208 1.69896 1.12179 1.43236 1.28098 0.86855 0.79684 0.82375 0.80898 1.20069 1.20881 1.18737 0.89148 0.90788 0.91116 0.79767 0.76356 0.76356 0.82362 0.92953 0.92009 0.90045 0.93840 0.95239 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.27 37.16 0.34 -1.64 16 2 C 0.07 1.12 2.17 -27.88 -0.06 1.06 16 3 H 0.11 1.63 6.15 -51.93 -0.32 1.32 16 4 O -0.32 -4.96 8.69 -47.20 -0.41 -5.37 16 5 C 0.52 7.18 7.88 34.59 0.27 7.45 16 6 O -0.50 -7.43 15.67 -19.25 -0.30 -7.73 16 7 C -0.12 -1.40 5.89 -104.86 -0.62 -2.02 16 8 C 0.13 1.52 10.78 -17.12 -0.18 1.33 16 9 N -0.44 -5.46 10.31 -9.85 -0.10 -5.56 16 10 C 0.13 1.33 7.30 -17.14 -0.13 1.21 16 11 Cl -0.03 -0.25 27.74 -51.86 -1.44 -1.68 16 12 C 0.18 1.53 6.77 -83.61 -0.57 0.97 16 13 N -0.86 -4.50 9.05 32.49 0.29 -4.21 16 14 C -0.08 -0.78 9.58 -38.66 -0.37 -1.15 16 15 C 0.51 10.35 7.10 -10.99 -0.08 10.27 16 16 O -0.52 -12.70 16.09 -14.05 -0.23 -12.92 16 17 N -0.59 -11.76 2.86 -182.95 -0.52 -12.28 16 18 C 0.07 1.07 8.92 59.85 0.53 1.61 16 19 C 0.22 5.17 4.23 -5.19 -0.02 5.15 16 20 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 21 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 22 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 23 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 24 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 28 H 0.09 0.91 5.12 -51.93 -0.27 0.64 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.19 2.19 7.61 -52.49 -0.40 1.79 16 32 H 0.41 1.75 7.51 -40.82 -0.31 1.44 16 33 H 0.41 1.23 8.85 -40.82 -0.36 0.87 16 34 H 0.16 1.25 7.73 -52.49 -0.41 0.85 16 35 H 0.05 0.59 7.04 -51.93 -0.37 0.22 16 36 H 0.06 0.75 6.06 -51.93 -0.31 0.44 16 37 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 39 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -35.88 358.67 -6.83 -42.71 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.32 Total: 1.03 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -1.31 Total: 10.79 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.44 Total: -48.79 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.94 Total: -26.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.44 Total: -1.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.88 -6.83 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767105573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.894 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds