Wall clock time and date at job start Tue Mar 31 2020 23:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34716 * 116.99776 * 269.99909 * 4 2 1 6 6 O 1.21474 * 120.00471 * 0.02562 * 5 4 2 7 7 C 1.47683 * 119.99495 * 179.97438 * 5 4 2 8 8 C 1.39602 * 120.51990 * 0.02562 * 7 5 4 9 9 N 1.31662 * 120.73520 * 179.97438 * 8 7 5 10 10 C 1.31977 * 121.95002 * 359.97438 * 9 8 7 11 11 Cl 1.73599 * 119.52209 * 179.97438 * 10 9 8 12 12 C 1.39181 * 120.96239 * 0.02562 * 10 9 8 13 13 N 1.39814 * 120.42606 * 179.97438 * 12 10 9 14 14 C 1.38920 * 119.14973 * 359.67786 * 12 10 9 15 15 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 16 16 O 1.21283 * 119.99478 * 244.99823 * 15 2 1 17 17 N 1.34773 * 120.00430 * 64.99170 * 15 2 1 18 18 C 1.46506 * 119.99969 * 0.02562 * 17 15 2 19 19 C 1.46499 * 120.00036 * 179.72648 * 17 15 2 20 20 C 1.50703 * 109.47126 * 270.27831 * 19 17 15 21 21 H 1.08002 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99905 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00302 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47082 * 89.99861 * 24 22 20 26 26 H 1.48492 * 109.47090 * 210.00394 * 24 22 20 27 27 H 1.48499 * 109.46812 * 330.00449 * 24 22 20 28 28 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 29 29 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 31 31 H 1.07999 * 119.62909 * 0.02562 * 8 7 5 32 32 H 0.96994 * 120.00306 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00041 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.88691 * 180.29296 * 14 12 10 35 35 H 1.08999 * 109.46892 * 269.72362 * 18 17 15 36 36 H 1.09000 * 109.46803 * 29.71536 * 18 17 15 37 37 H 1.09000 * 109.47214 * 149.72329 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 19 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 19 17 15 40 40 H 0.96998 * 119.99775 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0667 2.2850 6 8 1.9970 1.2608 2.2544 7 6 2.7090 -0.5617 3.5279 8 6 2.9660 -1.9331 3.5753 9 7 3.4044 -2.4977 4.6810 10 6 3.6193 -1.8028 5.7823 11 17 4.1974 -2.6120 7.2052 12 6 3.3883 -0.4309 5.8198 13 7 3.6193 0.2942 6.9927 14 6 2.9312 0.2099 4.6751 15 6 2.0324 -0.7103 -1.2306 16 8 2.6530 -1.7465 -1.1216 17 7 1.7918 -0.1940 -2.4521 18 6 1.0425 1.0580 -2.5836 19 6 2.2854 -0.8814 -3.6479 20 6 3.6681 -0.3821 -3.9797 21 1 4.1325 0.3722 -3.3618 22 6 4.3397 -0.8874 -5.0726 23 7 5.5461 -0.4512 -5.3625 24 14 3.5361 -2.1915 -6.1418 25 1 2.7676 -1.5350 -7.2298 26 1 4.5841 -3.0625 -6.7319 27 1 2.6177 -3.0136 -5.3136 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.8041 -2.5374 2.6950 32 1 3.9429 -0.1586 7.7870 33 1 3.4565 1.2503 7.0119 34 1 2.7471 1.2742 4.6715 35 1 -0.0212 0.8370 -2.6727 36 1 1.2123 1.6773 -1.7029 37 1 1.3786 1.5909 -3.4731 38 1 2.3218 -1.9546 -3.4611 39 1 1.6162 -0.6807 -4.4846 40 1 6.0188 -0.8070 -6.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767105573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:55 Heat of formation + Delta-G solvation = -100.581911 kcal Electronic energy + Delta-G solvation = -26731.130451 eV Core-core repulsion = 22571.590603 eV Total energy + Delta-G solvation = -4159.539848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 7.36 seconds Orbital eigenvalues (eV) -42.21026 -41.30700 -40.41443 -37.87775 -37.68610 -36.73478 -36.42016 -34.85455 -33.72522 -32.87365 -30.38003 -30.08008 -27.69817 -26.65307 -25.62491 -24.62065 -23.92548 -22.20885 -20.45677 -19.70363 -19.14280 -18.97822 -18.41709 -18.08307 -17.72842 -17.35299 -17.11707 -16.59375 -16.47081 -16.13340 -15.88552 -15.59124 -15.09045 -14.71691 -14.53457 -14.40828 -14.21356 -14.02528 -13.71562 -13.65772 -13.45340 -13.09880 -12.88748 -12.82145 -12.65362 -12.59425 -12.56080 -12.41114 -12.06075 -11.98921 -11.96529 -11.75753 -10.91482 -10.84415 -10.81556 -10.67229 -9.48690 -8.92091 -8.33667 -6.39678 -0.85927 0.06405 0.60411 1.06232 1.22789 1.34021 1.39501 1.49814 1.59355 2.26027 2.32658 2.46214 2.55811 3.00623 3.17931 3.37126 3.41479 3.58842 3.68044 3.74816 3.84760 4.02045 4.25206 4.34552 4.55149 4.64113 4.66286 4.79046 4.80410 4.89451 4.94804 5.07480 5.12153 5.15161 5.44655 5.52898 6.05897 6.20962 6.35665 6.49848 6.56012 6.62139 6.69425 7.15811 7.29003 8.83423 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002377 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.383673 B =11779.156457 C =12593.799173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.334 6.334 5 C 0.519 3.481 6 O -0.510 6.510 7 C -0.127 4.127 8 C 0.111 3.889 9 N -0.462 5.462 10 C 0.111 3.889 11 Cl -0.015 7.015 12 C 0.191 3.809 13 N -0.842 5.842 14 C -0.076 4.076 15 C 0.501 3.499 16 O -0.574 6.574 17 N -0.596 5.596 18 C 0.066 3.934 19 C 0.224 3.776 20 C -0.540 4.540 21 H 0.026 0.974 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.249 1.249 26 H -0.284 1.284 27 H -0.252 1.252 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.413 0.587 33 H 0.421 0.579 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 4.280 24.981 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.249 6.249 5 C 0.363 3.637 6 O -0.400 6.400 7 C -0.131 4.131 8 C -0.049 4.049 9 N -0.171 5.171 10 C -0.059 4.059 11 Cl 0.013 6.987 12 C 0.080 3.920 13 N -0.384 5.384 14 C -0.107 4.107 15 C 0.288 3.712 16 O -0.453 6.453 17 N -0.329 5.329 18 C -0.076 4.076 19 C 0.102 3.898 20 C -0.578 4.578 21 H 0.045 0.955 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.772 3.228 25 H -0.173 1.173 26 H -0.210 1.210 27 H -0.176 1.176 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.193 0.807 32 H 0.245 0.755 33 H 0.253 0.747 34 H 0.196 0.804 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.909 3.133 25.014 27.880 hybrid contribution 0.608 0.465 -0.439 0.883 sum -11.301 3.598 24.575 27.287 Atomic orbital electron populations 1.22320 0.88586 1.04806 1.06167 1.22633 0.98244 0.96673 0.80366 0.86578 1.86641 1.76893 1.41585 1.19798 1.21041 0.74030 0.84821 0.83761 1.90807 1.48860 1.15860 1.84488 1.19878 1.05799 0.95410 0.92050 1.22856 0.95146 0.91660 0.95280 1.66916 1.11597 1.39929 0.98704 1.21621 1.04758 0.88491 0.91024 1.98393 1.86471 1.80275 1.33539 1.17968 0.95150 0.89415 0.89489 1.42462 1.74093 1.11913 1.09885 1.21262 0.98772 1.01932 0.88731 1.20615 0.79953 0.85479 0.85156 1.90678 1.41844 1.26074 1.86690 1.47804 1.54161 1.25584 1.05302 1.22263 0.96807 0.84353 1.04162 1.19425 0.93417 0.93201 0.83756 1.21557 1.01377 1.23240 1.11640 0.95519 1.25892 0.95213 0.98773 0.98948 1.70060 1.14160 1.45223 1.29206 0.85680 0.78853 0.79056 0.79198 1.17259 1.21016 1.17607 0.87014 0.90916 0.89228 0.80731 0.75487 0.74667 0.80426 0.88677 0.89719 0.90759 0.95817 0.92281 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.27 71.98 0.67 -2.68 16 2 C 0.08 2.38 2.17 29.85 0.06 2.45 16 3 H 0.12 3.33 6.15 -2.39 -0.01 3.32 16 4 O -0.33 -10.58 8.69 -49.89 -0.43 -11.01 16 5 C 0.52 14.28 7.88 70.32 0.55 14.83 16 6 O -0.51 -14.50 15.67 19.92 0.31 -14.19 16 7 C -0.13 -2.98 5.89 -20.02 -0.12 -3.09 16 8 C 0.11 2.80 10.78 85.05 0.92 3.71 16 9 N -0.46 -11.57 10.31 -185.09 -1.91 -13.48 16 10 C 0.11 2.24 7.30 84.90 0.62 2.86 16 11 Cl -0.02 -0.25 27.74 -2.72 -0.08 -0.33 16 12 C 0.19 2.98 6.77 38.26 0.26 3.24 16 13 N -0.84 -6.53 9.05 -51.11 -0.46 -6.99 16 14 C -0.08 -1.33 9.58 22.87 0.22 -1.11 16 15 C 0.50 20.52 7.10 87.66 0.62 21.14 16 16 O -0.57 -29.46 16.09 15.71 0.25 -29.21 16 17 N -0.60 -23.46 2.86 -851.12 -2.43 -25.89 16 18 C 0.07 1.72 8.92 127.77 1.14 2.86 16 19 C 0.22 10.65 4.23 85.63 0.36 11.01 16 20 C -0.54 -31.61 9.94 25.60 0.25 -31.35 16 21 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 22 C 0.01 0.57 5.47 84.65 0.46 1.03 16 23 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 24 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 25 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 28 H 0.11 1.79 5.12 -2.38 -0.01 1.78 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.18 4.54 7.61 -2.91 -0.02 4.51 16 32 H 0.41 2.46 7.51 -92.71 -0.70 1.76 16 33 H 0.42 1.20 8.85 -92.70 -0.82 0.38 16 34 H 0.18 2.35 7.73 -2.91 -0.02 2.33 16 35 H 0.10 1.73 7.04 -2.39 -0.02 1.71 16 36 H 0.08 1.84 6.06 -2.39 -0.01 1.82 16 37 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 38 H 0.02 1.23 6.48 -2.39 -0.02 1.21 16 39 H 0.06 2.47 7.50 -2.38 -0.02 2.45 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -82.56 358.67 3.02 -79.54 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -0.44 Total: 10.58 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 6.02 Total: 24.90 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -4.50 Total: -106.06 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: 0.13 Total: -54.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -82.56 3.02 -79.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767105573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.042 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.36 seconds