Wall clock time and date at job start Tue Mar 31 2020 23:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34720 * 116.99600 * 90.00067 * 4 2 1 6 6 O 1.21485 * 119.99777 * 0.02562 * 5 4 2 7 7 C 1.47677 * 120.00231 * 180.02562 * 5 4 2 8 8 C 1.39610 * 120.51283 * 0.02562 * 7 5 4 9 9 N 1.31664 * 120.73103 * 180.02562 * 8 7 5 10 10 C 1.31976 * 121.94928 * 359.97438 * 9 8 7 11 11 Cl 1.73604 * 119.51800 * 180.02562 * 10 9 8 12 12 C 1.39177 * 120.96444 * 0.02562 * 10 9 8 13 13 N 1.39815 * 120.42495 * 179.97438 * 12 10 9 14 14 C 1.38920 * 119.14918 * 359.68601 * 12 10 9 15 15 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 16 16 O 1.21283 * 120.00236 * 114.99716 * 15 2 1 17 17 N 1.34774 * 119.99861 * 294.99892 * 15 2 1 18 18 C 1.46507 * 120.00108 * 359.97438 * 17 15 2 19 19 C 1.46496 * 120.00367 * 180.02562 * 17 15 2 20 20 C 1.50695 * 109.47370 * 89.99805 * 19 17 15 21 21 H 1.08005 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.37882 * 120.00369 * 180.02562 * 20 19 17 23 23 N 1.31512 * 119.99460 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00346 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47016 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47330 * 119.99488 * 24 22 20 27 27 H 1.48505 * 109.46750 * 239.99831 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.62957 * 0.02562 * 8 7 5 32 32 H 0.97001 * 120.00013 * 0.02562 * 13 12 10 33 33 H 0.96998 * 120.00071 * 180.02562 * 13 12 10 34 34 H 1.08007 * 120.88067 * 180.28930 * 14 12 10 35 35 H 1.09002 * 109.47123 * 89.99538 * 18 17 15 36 36 H 1.08997 * 109.47369 * 209.99929 * 18 17 15 37 37 H 1.09002 * 109.47042 * 330.00239 * 18 17 15 38 38 H 1.09001 * 109.47223 * 209.99860 * 19 17 15 39 39 H 1.09007 * 109.46674 * 329.99720 * 19 17 15 40 40 H 0.96998 * 120.00028 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2179 0.0666 -2.2851 6 8 1.9977 1.2609 -2.2541 7 6 2.7090 -0.5617 -3.5281 8 6 2.9649 -1.9333 -3.5757 9 7 3.4033 -2.4979 -4.6815 10 6 3.6181 -1.8030 -5.7827 11 17 4.1962 -2.6123 -7.2057 12 6 3.3881 -0.4309 -5.8199 13 7 3.6200 0.2944 -6.9925 14 6 2.9193 0.2078 -4.6788 15 6 2.0324 -0.7105 1.2305 16 8 2.6530 -1.7468 1.1215 17 7 1.7919 -0.1942 2.4520 18 6 1.0427 1.0579 2.5837 19 6 2.2807 -0.8845 3.6482 20 6 3.6620 -0.3861 3.9866 21 1 4.1291 0.3696 3.3723 22 6 4.3298 -0.8948 5.0804 23 7 3.7609 -1.8147 5.8286 24 14 6.0417 -0.2766 5.5002 25 1 6.4536 0.7509 4.5103 26 1 6.0327 0.3208 6.8597 27 1 7.0001 -1.4104 5.4641 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.8015 -2.5379 -2.6959 32 1 3.9430 -0.1586 -7.7871 33 1 3.4580 1.2505 -7.0114 34 1 2.7269 1.2706 -4.6778 35 1 -0.0215 0.8374 2.6677 36 1 1.3755 1.5884 3.4758 37 1 1.2166 1.6794 1.7052 38 1 1.6082 -0.6857 4.4827 39 1 2.3177 -1.9573 3.4589 40 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767105574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:08 Heat of formation + Delta-G solvation = -79.479232 kcal Electronic energy + Delta-G solvation = -26703.567229 eV Core-core repulsion = 22544.942462 eV Total energy + Delta-G solvation = -4158.624767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17625 -40.22190 -38.90926 -37.07550 -36.50605 -35.73970 -34.95174 -33.02146 -32.61746 -31.50349 -29.57676 -27.73664 -26.24955 -25.63422 -24.23280 -23.80558 -22.58870 -21.10570 -18.97712 -18.69222 -18.13889 -17.58374 -16.91604 -16.57407 -16.46844 -16.19460 -15.80310 -15.37139 -15.25617 -15.02857 -14.60405 -14.22559 -13.77304 -13.60611 -13.35671 -13.16279 -12.94961 -12.43550 -12.24859 -12.17616 -12.11085 -11.92317 -11.80859 -11.71417 -11.48413 -11.22491 -11.00112 -10.91252 -10.78381 -10.61045 -10.18693 -10.04168 -10.01242 -9.65175 -8.95144 -8.46565 -8.27367 -7.75737 -6.07493 -4.12372 0.01728 0.85351 1.37438 2.19519 2.26640 3.13097 3.21859 3.28982 3.33455 3.37068 3.41295 3.78017 4.06112 4.30588 4.42207 4.46303 4.49099 4.76265 4.78648 4.92069 5.03298 5.10524 5.27417 5.45193 5.56962 5.60995 5.63688 5.82122 5.93108 5.95880 6.18864 6.24437 6.61715 6.95034 7.05692 7.31527 7.36713 7.43133 7.54046 7.88550 8.18146 8.25703 8.81852 8.96814 9.52879 11.00719 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002410 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.971757 B =11614.636948 C =12483.691391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.316 6.316 5 C 0.515 3.485 6 O -0.501 6.501 7 C -0.119 4.119 8 C 0.125 3.875 9 N -0.441 5.441 10 C 0.126 3.874 11 Cl -0.028 7.028 12 C 0.176 3.824 13 N -0.862 5.862 14 C -0.082 4.082 15 C 0.508 3.492 16 O -0.517 6.517 17 N -0.595 5.595 18 C 0.076 3.924 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.186 0.814 32 H 0.406 0.594 33 H 0.407 0.593 34 H 0.159 0.841 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 6.428 -24.703 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.231 6.231 5 C 0.359 3.641 6 O -0.391 6.391 7 C -0.123 4.123 8 C -0.035 4.035 9 N -0.150 5.150 10 C -0.043 4.043 11 Cl 0.000 7.000 12 C 0.067 3.933 13 N -0.403 5.403 14 C -0.113 4.113 15 C 0.292 3.708 16 O -0.393 6.393 17 N -0.329 5.329 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.203 0.797 32 H 0.236 0.764 33 H 0.236 0.764 34 H 0.176 0.824 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.500 5.110 -24.652 25.770 hybrid contribution 0.918 1.527 -0.051 1.783 sum -4.582 6.638 -24.703 25.986 Atomic orbital electron populations 1.22294 0.92140 1.04235 1.04132 1.22716 0.95857 0.97679 0.82461 0.87451 1.86644 1.76374 1.40771 1.19317 1.20778 0.74503 0.84984 0.83862 1.90827 1.48227 1.15653 1.84357 1.19962 1.04755 0.95434 0.92148 1.23034 0.93874 0.91337 0.95282 1.66975 1.10895 1.39045 0.98090 1.21364 1.04404 0.87564 0.91011 1.98393 1.86681 1.80301 1.34597 1.18025 0.96464 0.89973 0.88819 1.42450 1.75743 1.11185 1.10922 1.21084 0.99453 1.01275 0.89460 1.19719 0.81272 0.85989 0.83783 1.90717 1.39529 1.23323 1.85702 1.48069 1.54002 1.23917 1.06873 1.21854 0.95390 0.86722 1.02859 1.19367 0.94328 0.93836 0.79687 1.21454 1.00989 1.22982 1.11292 0.92374 1.24933 0.98221 0.94871 0.96037 1.69935 1.38040 1.28043 1.17231 0.86432 0.84136 0.78776 0.78033 1.19795 1.20932 1.20800 0.91239 0.89144 0.90762 0.79726 0.76360 0.76373 0.82387 0.93069 0.90254 0.92351 0.94568 0.93572 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.28 37.16 0.34 -1.73 16 2 C 0.07 1.13 2.17 -27.88 -0.06 1.07 16 3 H 0.11 1.62 6.15 -51.93 -0.32 1.30 16 4 O -0.32 -5.02 8.69 -47.21 -0.41 -5.43 16 5 C 0.52 7.21 7.88 34.59 0.27 7.48 16 6 O -0.50 -7.46 15.67 -19.26 -0.30 -7.76 16 7 C -0.12 -1.41 5.89 -104.86 -0.62 -2.02 16 8 C 0.13 1.53 10.78 -17.11 -0.18 1.34 16 9 N -0.44 -5.47 10.31 -9.85 -0.10 -5.57 16 10 C 0.13 1.33 7.30 -17.14 -0.13 1.20 16 11 Cl -0.03 -0.25 27.74 -51.86 -1.44 -1.69 16 12 C 0.18 1.53 6.77 -83.62 -0.57 0.96 16 13 N -0.86 -4.47 9.05 32.49 0.29 -4.18 16 14 C -0.08 -0.78 9.58 -38.66 -0.37 -1.15 16 15 C 0.51 10.54 7.10 -10.98 -0.08 10.46 16 16 O -0.52 -13.05 16.09 -14.05 -0.23 -13.28 16 17 N -0.59 -12.26 2.86 -182.95 -0.52 -12.79 16 18 C 0.08 1.13 8.92 59.85 0.53 1.66 16 19 C 0.25 6.30 5.16 -5.20 -0.03 6.28 16 20 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 24 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.97 5.12 -51.93 -0.27 0.70 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.19 2.22 7.61 -52.49 -0.40 1.82 16 32 H 0.41 1.74 7.51 -40.82 -0.31 1.43 16 33 H 0.41 1.22 8.85 -40.82 -0.36 0.85 16 34 H 0.16 1.24 7.73 -52.48 -0.41 0.84 16 35 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.06 0.73 6.08 -51.93 -0.32 0.41 16 38 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 39 H 0.05 1.33 7.42 -51.92 -0.39 0.95 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -34.80 362.27 -7.18 -41.98 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.35 Total: -0.01 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -1.30 Total: 12.05 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.41 Total: -48.09 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.94 Total: -26.47 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.44 Total: -1.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.80 -7.18 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767105574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.495 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds