Wall clock time and date at job start Tue Mar 31 2020 23:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46903 * 2 1 4 4 C 1.46499 * 120.00079 * 269.99696 * 3 2 1 5 5 C 1.50699 * 109.47646 * 270.00196 * 4 3 2 6 6 H 1.07999 * 119.99396 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00250 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99907 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 60.00465 * 9 7 5 11 11 H 1.48509 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47199 * 300.00103 * 9 7 5 13 13 C 1.34774 * 120.00115 * 90.00288 * 3 2 1 14 14 O 1.21280 * 120.00532 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99630 * 359.97438 * 13 3 2 16 16 O 1.45208 * 109.46875 * 180.02562 * 15 13 3 17 17 C 1.34718 * 116.99556 * 180.02562 * 16 15 13 18 18 O 1.21473 * 120.00327 * 359.97438 * 17 16 15 19 19 C 1.47678 * 119.99688 * 180.02562 * 17 16 15 20 20 C 1.39615 * 120.51258 * 359.97438 * 19 17 16 21 21 N 1.31664 * 120.72586 * 180.02562 * 20 19 17 22 22 C 1.31981 * 121.95678 * 359.97438 * 21 20 19 23 23 Cl 1.73594 * 119.52147 * 180.02562 * 22 21 20 24 24 C 1.39177 * 120.95945 * 0.02562 * 22 21 20 25 25 N 1.39810 * 120.42592 * 179.97438 * 24 22 21 26 26 C 1.38921 * 119.15209 * 359.97438 * 24 22 21 27 27 H 1.09006 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47585 * 299.99569 * 1 2 3 29 29 H 1.09005 * 109.47221 * 60.00397 * 1 2 3 30 30 H 1.09007 * 109.47179 * 240.00175 * 2 1 3 31 31 H 1.09001 * 109.47084 * 120.00352 * 2 1 3 32 32 H 1.09001 * 109.46880 * 30.00341 * 4 3 2 33 33 H 1.09004 * 109.47084 * 150.00201 * 4 3 2 34 34 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47186 * 60.00353 * 15 13 3 36 36 H 1.08996 * 109.47440 * 300.00213 * 15 13 3 37 37 H 1.07988 * 119.63408 * 359.74635 * 20 19 17 38 38 H 0.96998 * 120.00074 * 180.02562 * 25 24 22 39 39 H 0.97003 * 120.00077 * 0.02562 * 25 24 22 40 40 H 1.08001 * 120.88334 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1258 -3.6181 9 14 5.9130 2.0956 -3.4175 10 1 6.1401 0.6389 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8409 2.6190 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1337 1.7104 4.8208 18 8 1.7323 0.5751 4.9800 19 6 2.4326 2.5589 5.9920 20 6 2.8940 3.8655 5.8215 21 7 3.1623 4.6255 6.8627 22 6 3.0092 4.1939 8.1005 23 17 3.3814 5.2502 9.4269 24 6 2.5537 2.9042 8.3579 25 7 2.3961 2.4583 9.6736 26 6 2.2577 2.0655 7.2907 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6750 3.5163 -4.4440 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0124 2.5299 37 1 3.0367 4.2556 4.8247 38 1 2.0786 1.5581 9.8459 39 1 2.6043 3.0492 10.4141 40 1 1.9020 1.0596 7.4583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767105646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:23 Heat of formation + Delta-G solvation = -84.454279 kcal Electronic energy + Delta-G solvation = -26358.156424 eV Core-core repulsion = 22199.315923 eV Total energy + Delta-G solvation = -4158.840501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15557 -40.12127 -38.93303 -37.08803 -36.51881 -35.75475 -35.33600 -32.87426 -32.66963 -30.21629 -29.83544 -29.03735 -26.70156 -25.12484 -23.82405 -23.10554 -22.65378 -21.33821 -18.87955 -18.61482 -18.12330 -17.58032 -16.94059 -16.79139 -16.46613 -16.36212 -15.87382 -15.40075 -15.29957 -15.11920 -14.49908 -14.29926 -13.79551 -13.53226 -13.39830 -13.19914 -13.00002 -12.66796 -12.23178 -12.13032 -12.07247 -11.92772 -11.81256 -11.66572 -11.25059 -11.04253 -10.97807 -10.91221 -10.65415 -10.55040 -10.15996 -10.06119 -10.03206 -9.69282 -9.04075 -8.45125 -8.29055 -7.78240 -6.06529 -4.11613 -0.00577 0.83676 1.36127 2.19118 2.20378 3.11334 3.20761 3.31291 3.31785 3.36412 3.40066 3.76097 4.05185 4.29904 4.42296 4.45502 4.50067 4.76119 4.81269 5.00317 5.15146 5.16728 5.28165 5.32736 5.55249 5.55638 5.70126 5.92551 5.96032 6.14594 6.17100 6.42171 6.60012 6.96757 7.03985 7.30102 7.37768 7.43160 7.50915 7.89110 8.18970 8.26528 8.81781 8.96763 9.53507 11.01594 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002273 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.762346 B =12313.251269 C =13474.296466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.517 6.517 15 C 0.051 3.949 16 O -0.320 6.320 17 C 0.515 3.485 18 O -0.502 6.502 19 C -0.120 4.120 20 C 0.126 3.874 21 N -0.441 5.441 22 C 0.127 3.873 23 Cl -0.028 7.028 24 C 0.176 3.824 25 N -0.862 5.862 26 C -0.082 4.082 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.187 0.813 38 H 0.407 0.593 39 H 0.406 0.594 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -5.090 25.432 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.392 6.392 15 C -0.027 4.027 16 O -0.234 6.234 17 C 0.359 3.641 18 O -0.391 6.391 19 C -0.124 4.124 20 C -0.035 4.035 21 N -0.150 5.150 22 C -0.043 4.043 23 Cl 0.001 6.999 24 C 0.067 3.933 25 N -0.403 5.403 26 C -0.113 4.113 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.204 0.796 38 H 0.236 0.764 39 H 0.236 0.764 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.984 -3.733 25.207 25.965 hybrid contribution 0.602 -1.252 0.176 1.400 sum -4.382 -4.985 25.383 26.237 Atomic orbital electron populations 1.22237 0.96512 1.01705 1.02446 1.21517 0.93764 0.83945 1.03062 1.48210 1.63768 1.13404 1.07118 1.19336 0.96473 0.93727 0.77492 1.21377 0.96832 1.32231 1.06369 0.92441 1.24926 0.97900 0.94842 0.96348 1.69919 1.35760 1.33235 1.14364 0.86549 0.84724 0.78237 0.77863 1.20258 1.21165 1.20109 1.19661 0.79846 0.87181 0.84223 1.90727 1.44424 1.17399 1.86680 1.23056 1.02942 0.92579 0.84078 1.86594 1.78338 1.44668 1.13819 1.20767 0.74641 0.85314 0.83416 1.90838 1.42398 1.19056 1.86856 1.19955 1.05241 0.95821 0.91388 1.23071 0.93864 0.88717 0.97850 1.66984 1.14151 1.36535 0.97321 1.21376 1.04212 0.88710 0.90006 1.98394 1.92856 1.66326 1.42359 1.18025 0.96493 0.91623 0.87173 1.42450 1.75899 1.18913 1.03043 1.21076 1.00549 1.00601 0.89035 0.91898 0.93116 0.91760 0.89382 0.91741 0.94619 0.93649 0.92594 0.88370 0.88455 0.79618 0.76375 0.76352 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.99 2.46 -175.06 -0.43 -12.42 16 4 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 5 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.51 10.28 7.75 -10.98 -0.09 10.20 16 14 O -0.52 -12.84 16.08 -14.10 -0.23 -13.06 16 15 C 0.05 0.77 4.51 36.01 0.16 0.93 16 16 O -0.32 -4.95 9.03 -47.22 -0.43 -5.38 16 17 C 0.52 6.90 7.90 34.59 0.27 7.18 16 18 O -0.50 -7.17 16.21 -19.24 -0.31 -7.48 16 19 C -0.12 -1.37 5.89 -104.86 -0.62 -1.98 16 20 C 0.13 1.50 10.78 -17.11 -0.18 1.32 16 21 N -0.44 -5.40 10.31 -9.85 -0.10 -5.50 16 22 C 0.13 1.30 7.29 -17.14 -0.13 1.18 16 23 Cl -0.03 -0.24 27.74 -51.86 -1.44 -1.68 16 24 C 0.18 1.46 6.77 -83.62 -0.57 0.90 16 25 N -0.86 -4.19 9.05 32.49 0.29 -3.90 16 26 C -0.08 -0.74 9.58 -38.66 -0.37 -1.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 36 H 0.10 1.27 7.18 -51.93 -0.37 0.89 16 37 H 0.19 2.23 7.61 -52.49 -0.40 1.83 16 38 H 0.41 1.07 8.85 -40.82 -0.36 0.71 16 39 H 0.41 1.62 7.51 -40.82 -0.31 1.32 16 40 H 0.16 1.17 7.73 -52.49 -0.41 0.76 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -34.28 367.58 -7.54 -41.82 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.55 Total: -0.34 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.60 Total: 11.24 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.50 Total: -47.28 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.96 Total: -25.92 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.44 Total: -1.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.28 -7.54 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767105646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.632 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds