Wall clock time and date at job start Tue Mar 31 2020 23:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46903 * 2 1 4 4 C 1.46499 * 120.00079 * 269.99696 * 3 2 1 5 5 C 1.50699 * 109.47646 * 270.00196 * 4 3 2 6 6 H 1.07999 * 119.99396 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00250 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99907 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47136 * 60.00465 * 9 7 5 11 11 H 1.48509 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47199 * 300.00103 * 9 7 5 13 13 C 1.34774 * 120.00115 * 90.00288 * 3 2 1 14 14 O 1.21280 * 120.00532 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99630 * 359.97438 * 13 3 2 16 16 O 1.45208 * 109.46875 * 180.02562 * 15 13 3 17 17 C 1.34718 * 116.99556 * 180.02562 * 16 15 13 18 18 O 1.21473 * 120.00327 * 359.97438 * 17 16 15 19 19 C 1.47678 * 119.99688 * 180.02562 * 17 16 15 20 20 C 1.39615 * 120.51258 * 359.97438 * 19 17 16 21 21 N 1.31664 * 120.72586 * 180.02562 * 20 19 17 22 22 C 1.31981 * 121.95678 * 359.97438 * 21 20 19 23 23 Cl 1.73594 * 119.52147 * 180.02562 * 22 21 20 24 24 C 1.39177 * 120.95945 * 0.02562 * 22 21 20 25 25 N 1.39810 * 120.42592 * 179.97438 * 24 22 21 26 26 C 1.38921 * 119.15209 * 359.97438 * 24 22 21 27 27 H 1.09006 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47585 * 299.99569 * 1 2 3 29 29 H 1.09005 * 109.47221 * 60.00397 * 1 2 3 30 30 H 1.09007 * 109.47179 * 240.00175 * 2 1 3 31 31 H 1.09001 * 109.47084 * 120.00352 * 2 1 3 32 32 H 1.09001 * 109.46880 * 30.00341 * 4 3 2 33 33 H 1.09004 * 109.47084 * 150.00201 * 4 3 2 34 34 H 0.96998 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47186 * 60.00353 * 15 13 3 36 36 H 1.08996 * 109.47440 * 300.00213 * 15 13 3 37 37 H 1.07988 * 119.63408 * 359.74635 * 20 19 17 38 38 H 0.96998 * 120.00074 * 180.02562 * 25 24 22 39 39 H 0.97003 * 120.00077 * 0.02562 * 25 24 22 40 40 H 1.08001 * 120.88334 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1258 -3.6181 9 14 5.9130 2.0956 -3.4175 10 1 6.1401 0.6389 -3.5949 11 1 6.1605 2.7959 -4.7036 12 1 6.8409 2.6190 -2.3830 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1673 15 6 1.9913 1.3062 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1337 1.7104 4.8208 18 8 1.7323 0.5751 4.9800 19 6 2.4326 2.5589 5.9920 20 6 2.8940 3.8655 5.8215 21 7 3.1623 4.6255 6.8627 22 6 3.0092 4.1939 8.1005 23 17 3.3814 5.2502 9.4269 24 6 2.5537 2.9042 8.3579 25 7 2.3961 2.4583 9.6736 26 6 2.2577 2.0655 7.2907 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6750 3.5163 -4.4440 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0124 2.5299 37 1 3.0367 4.2556 4.8247 38 1 2.0786 1.5581 9.8459 39 1 2.6043 3.0492 10.4141 40 1 1.9020 1.0596 7.4583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767105646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:22 Heat of formation + Delta-G solvation = -107.529442 kcal Electronic energy + Delta-G solvation = -26359.157038 eV Core-core repulsion = 22199.315923 eV Total energy + Delta-G solvation = -4159.841115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10624 -41.17315 -40.39942 -37.84455 -37.64880 -36.95308 -36.39885 -34.91849 -33.52735 -31.72362 -30.82061 -30.14853 -28.43195 -26.14266 -24.79525 -24.60320 -24.08838 -22.34474 -20.30518 -19.59967 -18.96474 -18.61536 -18.37359 -18.01329 -17.82948 -17.66043 -17.11938 -16.67755 -16.27563 -16.10772 -15.98627 -15.70303 -14.86841 -14.70291 -14.54811 -14.45267 -14.01614 -13.92628 -13.88150 -13.57808 -13.25672 -13.07455 -12.86251 -12.64798 -12.63999 -12.54671 -12.50086 -12.20571 -12.04951 -12.04453 -11.78788 -11.71482 -10.89607 -10.82721 -10.70784 -10.62505 -9.51743 -8.90490 -8.21400 -6.35696 -0.84099 0.08179 0.62149 1.10424 1.22265 1.38461 1.42844 1.49679 1.65356 2.28911 2.43265 2.47905 2.58366 3.08791 3.21527 3.41925 3.47688 3.61573 3.69757 3.91228 4.00357 4.04609 4.18650 4.32601 4.41203 4.62328 4.81352 4.90254 4.97847 5.05314 5.08307 5.11520 5.23074 5.39478 5.56275 5.81707 6.06156 6.07506 6.37766 6.52975 6.64861 6.71158 6.73832 7.23975 7.38997 8.85760 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002273 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.762346 B =12313.251269 C =13474.296466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.339 6.339 17 C 0.522 3.478 18 O -0.509 6.509 19 C -0.126 4.126 20 C 0.110 3.890 21 N -0.464 5.464 22 C 0.110 3.890 23 Cl -0.017 7.017 24 C 0.192 3.808 25 N -0.842 5.842 26 C -0.074 4.074 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.029 0.971 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.173 0.827 38 H 0.421 0.579 39 H 0.413 0.587 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -7.652 27.786 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.255 6.255 17 C 0.366 3.634 18 O -0.398 6.398 19 C -0.130 4.130 20 C -0.051 4.051 21 N -0.173 5.173 22 C -0.060 4.060 23 Cl 0.012 6.988 24 C 0.080 3.920 25 N -0.384 5.384 26 C -0.105 4.105 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.190 0.810 38 H 0.254 0.746 39 H 0.245 0.755 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.010 -6.372 27.618 28.783 hybrid contribution 0.555 -0.446 -0.416 0.825 sum -4.455 -6.819 27.202 28.395 Atomic orbital electron populations 1.22183 0.94358 1.03771 1.01868 1.21877 0.95525 0.80947 1.04489 1.48197 1.63635 1.15280 1.05646 1.18777 0.95511 0.91682 0.79815 1.21677 0.97847 1.32176 1.06540 0.92657 1.25836 1.02291 0.94484 0.96467 1.70040 1.37777 1.34093 1.14811 0.85493 0.79134 0.79033 0.77311 1.18391 1.20477 1.20394 1.20541 0.78395 0.86682 0.85832 1.90694 1.47021 1.20118 1.87720 1.22923 1.05163 0.91905 0.81372 1.86599 1.78840 1.45340 1.14686 1.20950 0.74118 0.85385 0.82930 1.90824 1.42959 1.19266 1.86775 1.19862 1.06211 0.95337 0.91607 1.22856 0.95351 0.89350 0.97518 1.66908 1.14972 1.37282 0.98181 1.21624 1.04780 0.89796 0.89768 1.98393 1.92793 1.66217 1.41428 1.17971 0.95016 0.90657 0.88365 1.42464 1.74339 1.19745 1.01805 1.21262 0.99772 1.01427 0.88024 0.88412 0.92233 0.93859 0.90128 0.88122 0.95293 0.98240 0.92397 0.85893 0.85492 0.80970 0.74630 0.75523 0.80197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.09 2.67 5.93 86.38 0.51 3.18 16 3 N -0.60 -24.45 2.46 -826.14 -2.03 -26.48 16 4 C 0.26 13.94 5.16 85.63 0.44 14.39 16 5 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 6 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.50 20.55 7.75 87.66 0.68 21.23 16 14 O -0.58 -30.10 16.08 15.77 0.25 -29.85 16 15 C 0.06 1.82 4.51 71.24 0.32 2.14 16 16 O -0.34 -10.39 9.03 -49.89 -0.45 -10.84 16 17 C 0.52 13.30 7.90 70.32 0.56 13.85 16 18 O -0.51 -13.18 16.21 19.92 0.32 -12.86 16 19 C -0.13 -2.76 5.89 -20.02 -0.12 -2.88 16 20 C 0.11 2.70 10.78 85.05 0.92 3.62 16 21 N -0.46 -11.44 10.31 -185.09 -1.91 -13.35 16 22 C 0.11 2.15 7.29 84.90 0.62 2.77 16 23 Cl -0.02 -0.27 27.74 -2.72 -0.08 -0.34 16 24 C 0.19 2.75 6.77 38.26 0.26 3.01 16 25 N -0.84 -5.56 9.05 -51.12 -0.46 -6.03 16 26 C -0.07 -1.17 9.58 22.87 0.22 -0.96 16 27 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 29 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 2.43 8.07 -2.38 -0.02 2.41 16 31 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 32 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 33 H 0.00 -0.03 7.42 -2.38 -0.02 -0.05 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.12 2.97 7.40 -2.39 -0.02 2.95 16 36 H 0.13 2.93 7.18 -2.39 -0.02 2.91 16 37 H 0.17 4.53 7.61 -2.92 -0.02 4.51 16 38 H 0.42 0.64 8.85 -92.71 -0.82 -0.18 16 39 H 0.41 2.07 7.51 -92.71 -0.70 1.37 16 40 H 0.18 2.02 7.73 -2.91 -0.02 1.99 16 Total: -1.00 -78.00 367.58 3.41 -74.59 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -0.40 Total: 6.46 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 5.85 Total: 27.52 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -4.12 Total: -101.44 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: 0.13 Total: -53.54 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.34 kcal Total: -78.00 3.41 -74.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767105646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.937 kcal (2) G-P(sol) polarization free energy of solvation -78.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds