Wall clock time and date at job start Tue Mar 31 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 O 1.45203 * 109.47127 * 119.99449 * 2 1 3 5 5 C 1.34737 * 117.00080 * 269.99659 * 4 2 1 6 6 O 1.21472 * 119.99825 * 0.02562 * 5 4 2 7 7 C 1.47705 * 119.99650 * 179.97438 * 5 4 2 8 8 C 1.39529 * 119.62966 * 179.73003 * 7 5 4 9 9 C 1.38264 * 119.18146 * 179.79542 * 8 7 5 10 10 C 1.39378 * 118.44921 * 0.46796 * 9 8 7 11 11 N 1.39079 * 120.40333 * 179.72884 * 10 9 8 12 12 C 1.39658 * 119.19391 * 359.75388 * 10 9 8 13 13 Cl 1.73605 * 119.62434 * 180.02562 * 12 10 9 14 14 N 1.31365 * 120.75103 * 0.02562 * 12 10 9 15 15 C 1.50704 * 109.47040 * 239.99541 * 2 1 3 16 16 O 1.21277 * 119.99609 * 256.02529 * 15 2 1 17 17 N 1.34770 * 119.99988 * 76.03049 * 15 2 1 18 18 C 1.46505 * 120.00163 * 5.36190 * 17 15 2 19 19 C 1.46492 * 119.99995 * 185.36709 * 17 15 2 20 20 C 1.50706 * 109.47383 * 89.99778 * 19 17 15 21 21 H 1.07993 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.37875 * 120.00132 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00019 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00100 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46875 * 90.00249 * 24 22 20 26 26 H 1.48497 * 109.47340 * 210.00386 * 24 22 20 27 27 H 1.48503 * 109.46986 * 330.00506 * 24 22 20 28 28 H 1.08994 * 109.47116 * 186.14636 * 1 2 3 29 29 H 1.08996 * 109.47218 * 66.13882 * 1 2 3 30 30 H 1.09006 * 109.46975 * 306.14350 * 1 2 3 31 31 H 1.08001 * 120.41148 * 0.02562 * 8 7 5 32 32 H 1.08002 * 120.77498 * 180.22336 * 9 8 7 33 33 H 0.97001 * 119.99601 * 180.02562 * 11 10 9 34 34 H 0.96994 * 119.99672 * 0.02562 * 11 10 9 35 35 H 1.09000 * 109.47126 * 84.82548 * 18 17 15 36 36 H 1.08997 * 109.47350 * 204.82954 * 18 17 15 37 37 H 1.09000 * 109.46993 * 324.82627 * 18 17 15 38 38 H 1.09007 * 109.47186 * 209.99873 * 19 17 15 39 39 H 1.09000 * 109.47111 * 329.99601 * 19 17 15 40 40 H 0.97005 * 119.99984 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2180 0.0670 2.2853 6 8 1.9970 1.2611 2.2544 7 6 2.7091 -0.5614 3.5284 8 6 2.9231 0.2249 4.6610 9 6 3.3789 -0.3737 5.8210 10 6 3.6176 -1.7468 5.8101 11 7 4.0819 -2.3897 6.9526 12 6 3.3853 -2.4693 4.6376 13 17 3.6783 -4.1802 4.6117 14 7 2.9477 -1.8689 3.5543 15 6 2.0323 -0.7105 -1.2304 16 8 2.4735 -1.8368 -1.1426 17 7 1.9913 -0.0944 -2.4283 18 6 1.5690 1.3057 -2.5179 19 6 2.3687 -0.8245 -3.6409 20 6 1.1505 -1.4921 -4.2251 21 1 0.1909 -1.3830 -3.7418 22 6 1.2609 -2.2422 -5.3767 23 7 0.1978 -2.8251 -5.8863 24 14 2.9205 -2.4304 -6.2133 25 1 3.6181 -3.6219 -5.6667 26 1 2.7217 -2.6004 -7.6750 27 1 3.7412 -1.2183 -5.9631 28 1 -0.3633 -1.0217 0.1100 29 1 -0.3633 0.4157 -0.9398 30 1 -0.3633 0.6062 0.8299 31 1 2.7314 1.2874 4.6331 32 1 3.5498 0.2098 6.7136 33 1 4.2464 -3.3455 6.9383 34 1 4.2412 -1.8822 7.7637 35 1 2.4230 1.9556 -2.3269 36 1 1.1774 1.5040 -3.5156 37 1 0.7926 1.4990 -1.7778 38 1 2.7861 -0.1288 -4.3689 39 1 3.1135 -1.5807 -3.3927 40 1 0.2755 -3.3525 -6.6967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772077646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:35 Heat of formation + Delta-G solvation = -102.193814 kcal Electronic energy + Delta-G solvation = -26805.228690 eV Core-core repulsion = 22645.618946 eV Total energy + Delta-G solvation = -4159.609745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.12797 -41.28284 -40.37662 -37.84100 -37.57043 -36.72892 -36.51586 -34.81135 -33.21632 -33.14272 -30.71838 -30.20828 -27.61708 -26.34151 -25.53904 -24.84775 -23.82825 -22.30816 -20.39391 -19.85955 -19.14630 -18.79503 -18.35663 -18.13445 -17.70642 -17.31550 -17.14976 -16.57056 -16.36956 -16.00437 -15.83720 -15.76205 -14.95855 -14.74647 -14.52537 -14.34231 -14.24238 -13.83716 -13.73979 -13.65053 -13.41485 -13.22861 -12.89572 -12.85565 -12.64718 -12.58602 -12.45745 -12.43070 -12.06183 -12.03879 -11.93707 -11.74381 -10.89012 -10.83380 -10.73765 -10.67522 -9.50150 -8.95696 -8.34154 -6.39540 -0.54183 -0.01269 0.70452 1.17082 1.25060 1.33342 1.37760 1.45485 1.54349 2.27796 2.31244 2.51300 2.55872 3.00026 3.10611 3.37350 3.43423 3.69713 3.78784 3.83435 3.90423 4.10216 4.27875 4.47937 4.55569 4.62085 4.63022 4.75317 4.81813 4.87563 4.91352 5.06731 5.16506 5.20563 5.43203 5.52715 5.99230 6.20918 6.27403 6.50055 6.61798 6.62691 6.71023 7.14454 7.28172 8.82474 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002633 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.644451 B =10631.367729 C =11807.725921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.078 3.922 3 H 0.130 0.870 4 O -0.331 6.331 5 C 0.526 3.474 6 O -0.512 6.512 7 C 0.005 3.995 8 C -0.031 4.031 9 C -0.146 4.146 10 C 0.239 3.761 11 N -0.824 5.824 12 C 0.071 3.929 13 Cl -0.033 7.033 14 N -0.423 5.423 15 C 0.502 3.498 16 O -0.575 6.575 17 N -0.597 5.597 18 C 0.065 3.935 19 C 0.222 3.778 20 C -0.538 4.538 21 H 0.034 0.966 22 C 0.013 3.987 23 N -0.943 5.943 24 Si 0.946 3.054 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.236 1.236 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.179 0.821 32 H 0.205 0.795 33 H 0.412 0.588 34 H 0.427 0.573 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 10.298 30.893 33.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.148 0.852 4 O -0.246 6.246 5 C 0.371 3.629 6 O -0.400 6.400 7 C -0.132 4.132 8 C -0.052 4.052 9 C -0.176 4.176 10 C 0.122 3.878 11 N -0.362 5.362 12 C -0.104 4.104 13 Cl -0.005 7.005 14 N -0.135 5.135 15 C 0.289 3.711 16 O -0.454 6.454 17 N -0.330 5.330 18 C -0.077 4.077 19 C 0.100 3.900 20 C -0.576 4.576 21 H 0.052 0.948 22 C -0.185 4.185 23 N -0.583 5.583 24 Si 0.768 3.232 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.196 0.804 32 H 0.221 0.779 33 H 0.244 0.756 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.462 9.374 29.969 32.521 hybrid contribution 0.369 -0.822 -0.236 0.931 sum 8.830 8.552 29.733 32.174 Atomic orbital electron populations 1.22158 0.90241 1.03753 1.05398 1.22608 0.97222 0.97313 0.80834 0.85230 1.86837 1.76351 1.41572 1.19828 1.21071 0.73747 0.84627 0.83475 1.90786 1.49795 1.15122 1.84338 1.19515 1.11649 0.88818 0.93224 1.22155 0.91022 1.02466 0.89577 1.21471 1.04364 0.90985 1.00762 1.18625 0.89721 0.92712 0.86740 1.42562 1.70028 1.12852 1.10800 1.21278 1.09906 0.88459 0.90790 1.98393 1.94319 1.09616 1.98149 1.66532 1.06851 1.11665 1.28483 1.20631 0.78897 0.86336 0.85218 1.90670 1.47416 1.20955 1.86378 1.47823 1.65340 1.13940 1.05870 1.22215 1.01349 0.79250 1.04859 1.19450 0.94960 0.92722 0.82824 1.21533 0.94923 1.31654 1.09510 0.94806 1.25818 1.00888 0.94236 0.97605 1.70040 1.31503 1.34176 1.22568 0.85750 0.79467 0.80171 0.77788 1.20505 1.19788 1.15936 0.92601 0.88573 0.88332 0.80363 0.77854 0.75637 0.73915 0.89893 0.89917 0.89463 0.92284 0.96388 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 9.19 71.98 0.66 -4.17 16 2 C 0.08 2.77 2.14 29.85 0.06 2.84 16 3 H 0.13 3.83 6.32 -2.39 -0.02 3.81 16 4 O -0.33 -12.72 9.28 -50.24 -0.47 -13.18 16 5 C 0.53 16.54 7.91 70.32 0.56 17.09 16 6 O -0.51 -15.20 15.57 19.93 0.31 -14.89 16 7 C 0.01 0.14 6.74 41.79 0.28 0.42 16 8 C -0.03 -0.48 9.61 22.59 0.22 -0.26 16 9 C -0.15 -1.28 10.02 22.55 0.23 -1.05 16 10 C 0.24 2.97 6.79 38.61 0.26 3.23 16 11 N -0.82 -3.59 9.02 -50.99 -0.46 -4.05 16 12 C 0.07 1.60 7.30 85.11 0.62 2.22 16 13 Cl -0.03 -0.70 27.76 -2.72 -0.08 -0.78 16 14 N -0.42 -12.65 10.08 -175.41 -1.77 -14.42 16 15 C 0.50 22.85 6.95 87.66 0.61 23.45 16 16 O -0.58 -32.43 16.13 15.24 0.25 -32.18 16 17 N -0.60 -25.56 2.86 -851.13 -2.43 -27.99 16 18 C 0.06 1.91 9.79 127.77 1.25 3.16 16 19 C 0.22 11.17 4.25 85.64 0.36 11.54 16 20 C -0.54 -32.13 9.94 25.60 0.25 -31.88 16 21 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 22 C 0.01 0.77 5.47 84.65 0.46 1.23 16 23 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 24 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.10 2.74 6.33 -2.39 -0.02 2.73 16 30 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.18 1.98 7.63 -2.91 -0.02 1.96 16 32 H 0.20 -0.26 8.06 -2.91 -0.02 -0.28 16 33 H 0.41 1.88 7.51 -92.71 -0.70 1.19 16 34 H 0.43 -1.15 8.85 -92.71 -0.82 -1.97 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.45 8.03 -2.39 -0.02 2.44 16 37 H 0.09 2.14 4.92 -2.39 -0.01 2.13 16 38 H 0.06 2.66 7.13 -2.38 -0.02 2.65 16 39 H 0.02 0.98 6.78 -2.39 -0.02 0.97 16 40 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 Total: -1.00 -90.31 361.32 2.93 -87.38 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -0.44 Total: 5.13 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 5.83 Total: 27.81 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.36 Total: -106.48 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: 0.09 Total: -60.25 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -90.31 2.93 -87.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772077646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.812 kcal (2) G-P(sol) polarization free energy of solvation -90.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds