Wall clock time and date at job start Wed Apr 1 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35771 * 117.00616 * 2 1 4 4 C 1.39344 * 120.17145 * 89.99187 * 3 2 1 5 5 N 1.39981 * 120.01001 * 359.97438 * 4 3 2 6 6 C 1.46499 * 119.99788 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46835 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00280 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99788 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47061 * 60.00295 * 15 13 11 17 17 H 1.48505 * 109.46988 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47116 * 300.00069 * 15 13 11 19 19 C 1.38574 * 119.97552 * 180.25444 * 4 3 2 20 20 C 1.38612 * 120.30136 * 359.43258 * 19 4 3 21 21 Cl 1.73602 * 119.83287 * 180.32125 * 20 19 4 22 22 C 1.37863 * 120.33869 * 0.59167 * 20 19 4 23 23 C 1.39843 * 120.01610 * 359.68795 * 22 20 19 24 24 C 1.47550 * 120.14760 * 180.02562 * 23 22 20 25 25 N 1.34774 * 120.00077 * 359.97269 * 24 23 22 26 26 O 1.21590 * 119.99584 * 179.97438 * 24 23 22 27 27 H 1.09003 * 109.46977 * 300.00626 * 1 2 3 28 28 H 1.09004 * 109.46882 * 60.00111 * 1 2 3 29 29 H 1.08989 * 109.47472 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99791 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47391 * 59.99626 * 6 5 4 32 32 H 1.09001 * 109.46813 * 299.99682 * 6 5 4 33 33 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 35 35 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 36 36 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.85102 * 179.72670 * 19 4 3 38 38 H 1.07995 * 119.99538 * 179.70309 * 22 20 19 39 39 H 0.97000 * 120.00200 * 359.97438 * 25 24 23 40 40 H 0.97004 * 119.99484 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 2.3634 1.8337 1.2047 5 7 2.0467 1.2139 2.4191 6 6 2.3815 1.8699 3.6855 7 6 1.9371 1.0014 4.8341 8 8 1.3946 -0.0612 4.6162 9 7 2.1434 1.4050 6.1033 10 6 1.7119 0.5604 7.2198 11 6 2.0562 1.2353 8.5225 12 1 2.5469 2.1973 8.5191 13 6 1.7447 0.6246 9.7188 14 7 1.1475 -0.5472 9.7230 15 14 2.1721 1.4609 11.3335 16 1 1.4805 2.7728 11.4098 17 1 1.7345 0.6047 12.4653 18 1 3.6403 1.6701 11.4092 19 6 2.9879 3.0707 1.1999 20 6 3.3095 3.6872 0.0008 21 17 4.0993 5.2331 0.0091 22 6 3.0005 3.0815 -1.1984 23 6 2.3651 1.8358 -1.2097 24 6 2.0336 1.1846 -2.4916 25 7 2.3426 1.7907 -3.6550 26 8 1.4815 0.1013 -2.4982 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.6055 0.3500 2.4222 31 1 1.8740 2.8330 3.7411 32 1 3.4592 2.0234 3.7413 33 1 2.5776 2.2547 6.2775 34 1 0.6342 0.4071 7.1641 35 1 2.2192 -0.4028 7.1640 36 1 0.9280 -0.9767 10.5646 37 1 3.2293 3.5546 2.1348 38 1 3.2494 3.5690 -2.1294 39 1 2.7826 2.6551 -3.6498 40 1 2.1242 1.3627 -4.4977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789694540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:29 Heat of formation + Delta-G solvation = -89.626299 kcal Electronic energy + Delta-G solvation = -26423.367815 eV Core-core repulsion = 22264.303038 eV Total energy + Delta-G solvation = -4159.064777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92359 -39.36547 -38.73909 -37.77838 -36.64859 -35.40295 -34.34805 -33.87917 -32.47345 -30.70552 -30.23501 -28.04008 -26.90215 -26.21042 -24.25418 -22.58543 -22.33919 -20.78112 -19.94412 -18.86257 -18.15480 -17.47295 -17.01499 -16.49973 -16.24395 -15.91059 -15.52687 -15.40358 -15.35322 -15.14869 -14.75086 -14.63648 -14.26476 -13.97154 -13.78473 -13.73702 -13.17142 -13.03271 -12.66374 -12.37277 -12.04677 -12.00323 -11.74873 -11.43065 -11.38346 -11.08153 -10.93575 -10.41628 -10.40465 -10.37109 -10.04898 -9.92514 -9.51781 -9.36612 -9.03805 -8.83693 -8.08006 -7.70273 -6.24031 -4.32009 0.36503 0.91271 1.73976 2.54724 2.90582 3.06451 3.20710 3.23522 3.24350 3.26466 3.27889 3.73000 3.92969 4.28929 4.35611 4.61858 4.80803 4.91316 5.01588 5.12166 5.14432 5.26543 5.28439 5.29591 5.35525 5.36451 5.67904 5.73674 5.78870 5.99888 6.44396 6.78467 6.98373 7.15839 7.21695 7.34985 7.39164 7.53735 7.58195 7.86966 7.95662 8.41503 8.62703 8.87071 9.34589 10.85971 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.002297 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.596233 B =12185.386030 C =13826.498356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.310 6.310 3 C 0.088 3.912 4 C 0.216 3.784 5 N -0.716 5.716 6 C 0.097 3.903 7 C 0.493 3.507 8 O -0.549 6.549 9 N -0.704 5.704 10 C 0.250 3.750 11 C -0.547 4.547 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.165 4.165 20 C 0.005 3.995 21 Cl -0.063 7.063 22 C -0.134 4.134 23 C -0.106 4.106 24 C 0.564 3.436 25 N -0.853 5.853 26 O -0.515 6.515 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.421 0.579 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.394 0.606 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.268 0.732 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.400 0.600 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 11.918 -25.069 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.226 6.226 3 C 0.038 3.962 4 C 0.108 3.892 5 N -0.347 5.347 6 C -0.031 4.031 7 C 0.276 3.724 8 O -0.429 6.429 9 N -0.352 5.352 10 C 0.129 3.871 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.521 5.521 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.189 4.189 20 C -0.022 4.022 21 Cl -0.035 7.035 22 C -0.156 4.156 23 C -0.110 4.110 24 C 0.350 3.650 25 N -0.418 5.418 26 O -0.391 6.391 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.261 0.739 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.226 0.774 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.230 0.770 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.350 10.298 -24.639 26.913 hybrid contribution 0.396 1.172 0.742 1.443 sum 3.746 11.470 -23.897 26.770 Atomic orbital electron populations 1.22943 0.78444 1.03605 1.00033 1.86073 1.20096 1.22663 1.93756 1.18172 1.00701 0.87939 0.89403 1.17876 0.94186 0.91174 0.85938 1.44490 1.65149 1.24268 1.00746 1.21248 1.01745 0.96575 0.83502 1.20238 0.80501 0.86993 0.84634 1.90681 1.44019 1.23618 1.84540 1.46414 1.59097 1.23926 1.05794 1.19170 0.95943 0.90302 0.81643 1.21157 1.41294 1.05752 0.90325 0.91827 1.24956 0.94640 0.94858 0.99519 1.69955 1.39759 1.14939 1.27483 0.86450 0.78889 0.79273 0.82159 1.20022 1.21031 1.20003 1.20540 1.05027 0.95238 0.98138 1.20360 0.99294 0.88444 0.94097 1.98384 1.78659 1.27475 1.98933 1.20693 1.03087 0.94698 0.97119 1.19855 1.03322 0.94857 0.93008 1.17945 0.78484 0.84798 0.83820 1.43753 1.64690 1.25089 1.08243 1.90885 1.40834 1.20024 1.87322 0.93907 0.93466 0.88614 0.73894 0.89172 0.89080 0.77350 0.95330 0.95291 0.92274 0.83881 0.84683 0.77028 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.49 101.05 1.06 1.59 16 2 O -0.31 -4.46 8.08 -40.95 -0.33 -4.79 16 3 C 0.09 1.12 5.75 -38.54 -0.22 0.90 16 4 C 0.22 2.60 6.66 -83.60 -0.56 2.04 16 5 N -0.72 -9.57 5.70 -59.69 -0.34 -9.91 16 6 C 0.10 1.22 5.39 -5.19 -0.03 1.19 16 7 C 0.49 8.88 7.90 -10.98 -0.09 8.80 16 8 O -0.55 -12.22 15.67 5.56 0.09 -12.13 16 9 N -0.70 -13.54 5.55 -61.47 -0.34 -13.89 16 10 C 0.25 6.31 5.43 -5.19 -0.03 6.29 16 11 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 12 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -25.47 13.29 55.43 0.74 -24.74 16 15 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C -0.16 -1.65 9.08 -39.32 -0.36 -2.00 16 20 C 0.01 0.05 6.31 -39.58 -0.25 -0.20 16 21 Cl -0.06 -0.51 28.94 -51.86 -1.50 -2.01 16 22 C -0.13 -1.10 9.31 -39.12 -0.36 -1.47 16 23 C -0.11 -1.13 5.88 -104.87 -0.62 -1.74 16 24 C 0.56 6.02 8.04 -12.46 -0.10 5.92 16 25 N -0.85 -5.01 8.82 30.46 0.27 -4.74 16 26 O -0.52 -7.45 14.84 -16.64 -0.25 -7.69 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.55 7.50 -51.93 -0.39 0.16 16 29 H 0.10 1.06 8.14 -51.94 -0.42 0.63 16 30 H 0.42 6.49 6.80 -40.82 -0.28 6.21 16 31 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 33 H 0.39 6.25 8.32 -40.82 -0.34 5.91 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.14 1.22 6.71 -52.49 -0.35 0.87 16 38 H 0.14 0.68 6.40 -52.49 -0.34 0.34 16 39 H 0.40 1.24 6.86 -40.82 -0.28 0.96 16 40 H 0.40 1.83 8.93 -40.82 -0.36 1.46 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -33.95 362.60 -7.58 -41.53 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.39 Total: 9.24 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.97 Total: 8.37 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.32 Total: -53.28 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.49 Total: -24.61 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.95 -7.58 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789694540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.098 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds