Wall clock time and date at job start Wed Apr 1 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 103.00136 * 2 1 4 4 H 1.08995 * 110.43684 * 52.46017 * 3 2 1 5 5 C 1.55236 * 110.58011 * 289.87108 * 3 2 1 6 6 C 1.54890 * 102.58671 * 203.33921 * 5 3 2 7 7 C 1.54264 * 104.31297 * 37.93523 * 6 5 3 8 8 H 1.08999 * 110.03096 * 217.03586 * 7 6 5 9 9 N 1.46502 * 110.03471 * 95.65523 * 7 6 5 10 10 S 1.65598 * 119.99963 * 96.44891 * 9 7 6 11 11 O 1.42105 * 106.40399 * 178.53996 * 10 9 7 12 12 O 1.42099 * 106.40790 * 311.46453 * 10 9 7 13 13 C 1.76203 * 107.21483 * 65.00524 * 10 9 7 14 14 C 1.38657 * 119.87864 * 90.00054 * 13 10 9 15 15 C 1.38607 * 120.50571 * 179.97438 * 14 13 10 16 16 C 1.37642 * 120.24654 * 0.02562 * 15 14 13 17 17 C 1.40705 * 119.74349 * 359.97438 * 16 15 14 18 18 C 1.41398 * 120.24179 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99518 * 204.38283 * 18 17 16 20 20 C 1.39947 * 120.00177 * 24.38589 * 18 17 16 21 21 N 1.30820 * 119.99962 * 17.85401 * 20 18 17 22 22 Si 1.86796 * 119.99911 * 197.85146 * 20 18 17 23 23 H 1.48510 * 109.47156 * 90.00024 * 22 20 18 24 24 H 1.48493 * 109.47350 * 209.99787 * 22 20 18 25 25 H 1.48503 * 109.47433 * 330.00428 * 22 20 18 26 26 C 1.37594 * 119.87435 * 269.71760 * 13 10 9 27 27 C 1.53876 * 106.59963 * 336.32340 * 7 6 5 28 28 H 1.09007 * 109.46840 * 300.00454 * 1 2 3 29 29 H 1.09004 * 109.46797 * 59.99800 * 1 2 3 30 30 H 1.08993 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.89526 * 85.04705 * 5 3 2 32 32 H 1.09005 * 110.76771 * 321.57052 * 5 3 2 33 33 H 1.08998 * 110.48520 * 279.18889 * 6 5 3 34 34 H 1.09006 * 110.48191 * 156.67682 * 6 5 3 35 35 H 0.96997 * 119.99888 * 276.45213 * 9 7 6 36 36 H 1.08005 * 119.74721 * 359.94930 * 14 13 10 37 37 H 1.07995 * 119.88461 * 180.02562 * 15 14 13 38 38 H 1.08002 * 120.13052 * 179.97438 * 16 15 14 39 39 H 0.97002 * 120.00119 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.12751 * 0.02562 * 26 13 10 41 41 H 1.08996 * 110.03286 * 119.28581 * 27 7 6 42 42 H 1.09005 * 110.03108 * 240.66896 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7013 2.2783 0.8099 5 6 1.8635 2.4103 -1.3668 6 6 2.7883 3.6522 -1.4087 7 6 4.1063 3.1680 -0.7697 8 1 4.5447 3.9648 -0.1689 9 7 5.0465 2.7513 -1.8131 10 16 6.2044 3.8049 -2.3529 11 8 6.9667 3.1005 -3.3236 12 8 5.5368 5.0288 -2.6276 13 6 7.2906 4.1227 -1.0024 14 6 8.4042 3.3199 -0.8079 15 6 9.2675 3.5585 0.2499 16 6 9.0271 4.5973 1.1203 17 6 7.9001 5.4186 0.9326 18 6 7.6427 6.4884 1.8207 19 1 6.6361 6.8610 1.9397 20 6 8.6923 7.0643 2.5454 21 7 9.9301 6.8743 2.1668 22 14 8.3260 8.1042 4.0533 23 1 8.2999 7.2368 5.2584 24 1 9.3807 9.1376 4.2101 25 1 7.0060 8.7648 3.8903 26 6 7.0337 5.1704 -0.1482 27 6 3.7463 1.9696 0.1259 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.8154 2.7081 -1.3933 32 1 2.0937 1.7295 -2.1863 33 1 2.3589 4.4673 -0.8263 34 1 2.9569 3.9676 -2.4384 35 1 4.9907 1.8583 -2.1877 36 1 8.6002 2.5020 -1.4855 37 1 10.1321 2.9271 0.3918 38 1 9.7008 4.7813 1.9441 39 1 10.6576 7.2732 2.6693 40 1 6.1681 5.7971 -0.3040 41 1 4.2708 1.0773 -0.2157 42 1 4.0109 2.1845 1.1613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795119001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:23 Heat of formation + Delta-G solvation = -90.114893 kcal Electronic energy + Delta-G solvation = -25327.904015 eV Core-core repulsion = 21717.154972 eV Total energy + Delta-G solvation = -3610.749043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.60052 -39.40816 -38.19393 -36.88596 -35.66421 -34.33723 -31.91405 -31.59235 -29.95441 -29.66295 -28.11947 -27.33334 -23.66413 -22.82981 -21.98815 -21.57417 -20.61879 -19.53728 -18.55282 -17.76936 -17.69747 -17.04809 -16.84282 -16.64414 -16.44282 -15.99262 -15.28100 -15.07452 -15.07116 -14.57404 -14.33822 -14.29392 -14.02655 -13.76268 -13.61742 -13.28454 -13.19676 -13.11668 -13.05359 -13.00836 -12.83192 -12.79961 -12.57166 -12.21490 -12.18996 -12.09175 -11.83978 -11.76576 -11.53889 -11.37285 -11.13917 -10.73892 -10.42533 -9.84698 -9.55816 -8.72463 -8.62635 -6.44366 -0.48607 0.41129 0.79712 0.84467 1.38386 1.47326 1.51730 1.70032 2.14002 2.18726 2.55724 2.79826 3.44579 3.47372 3.53673 3.56085 3.94662 4.27723 4.31344 4.34641 4.38478 4.39447 4.43768 4.47125 4.48556 4.52431 4.66495 4.84795 4.90103 4.90671 4.94679 5.07016 5.08433 5.21413 5.26051 5.26632 5.40255 5.41553 5.56788 5.89520 5.94411 6.09380 6.14990 6.53288 6.80785 6.85349 8.25660 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.003407 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.509487 B = 8215.582195 C = 9414.271251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.304 6.304 3 C -0.048 4.048 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.138 4.138 7 C 0.147 3.853 8 H 0.084 0.916 9 N -1.095 6.095 10 S 2.717 3.283 11 O -0.993 6.993 12 O -0.988 6.988 13 C -0.638 4.638 14 C -0.149 4.149 15 C -0.124 4.124 16 C -0.142 4.142 17 C 0.064 3.936 18 C -0.495 4.495 19 H 0.084 0.916 20 C 0.035 3.965 21 N -0.825 5.825 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.142 4.142 27 C -0.105 4.105 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.426 0.574 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.291 0.709 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.179 -9.748 -0.876 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.077 6.077 3 C -0.177 4.177 4 H 0.122 0.878 5 C -0.146 4.146 6 C -0.179 4.179 7 C 0.038 3.962 8 H 0.102 0.898 9 N -0.857 5.857 10 S 2.810 3.190 11 O -0.983 6.983 12 O -0.978 6.978 13 C -0.727 4.727 14 C -0.170 4.170 15 C -0.143 4.143 16 C -0.162 4.162 17 C 0.061 3.939 18 C -0.524 4.524 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.451 5.451 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.163 4.163 27 C -0.145 4.145 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.263 0.737 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.213 -10.064 -1.589 18.309 hybrid contribution -0.012 1.163 1.189 1.663 sum -15.224 -8.901 -0.400 17.640 Atomic orbital electron populations 1.23411 0.91538 1.07188 1.05833 1.87094 1.10496 1.12075 1.97987 1.24073 0.99094 0.92657 1.01897 0.87774 1.22892 1.00240 0.96275 0.95235 1.22908 0.94299 0.98489 1.02174 1.21507 0.90049 0.97002 0.87609 0.89801 1.55364 1.46549 1.30037 1.53712 1.00872 0.72555 0.72685 0.72928 1.93494 1.71665 1.74223 1.58968 1.93509 1.74598 1.45819 1.83843 1.30255 1.14517 1.06931 1.20973 1.20441 0.95514 1.00961 1.00102 1.21129 0.99267 0.98078 0.95824 1.21665 0.99684 0.94761 1.00069 1.18035 0.92056 0.92481 0.91341 1.19889 0.96112 1.14896 1.21541 0.89800 1.26791 0.93889 0.97007 1.00325 1.69831 1.01131 1.37470 1.36687 0.85159 0.79443 0.77761 0.77157 1.18403 1.19506 1.17979 1.20837 1.02253 0.98071 0.95145 1.22265 0.93548 0.97864 1.00799 0.89704 0.89454 0.87436 0.89341 0.90165 0.89287 0.90753 0.73671 0.85410 0.85821 0.86970 0.89813 0.86754 0.89784 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.72 113.37 1.22 -0.01 16 2 S -0.30 -5.47 21.64 -56.49 -1.22 -6.69 16 3 C -0.05 -0.82 3.36 31.79 0.11 -0.71 16 4 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.11 -1.68 6.33 32.01 0.20 -1.47 16 6 C -0.14 -2.81 6.53 31.67 0.21 -2.60 16 7 C 0.15 3.53 3.44 45.72 0.16 3.69 16 8 H 0.08 2.31 7.31 -2.39 -0.02 2.29 16 9 N -1.09 -28.70 5.42 -166.37 -0.90 -29.60 16 10 S 2.72 97.54 5.66 -56.49 -0.32 97.22 16 11 O -0.99 -39.21 17.27 -128.00 -2.21 -41.42 16 12 O -0.99 -39.86 17.02 -128.00 -2.18 -42.04 16 13 C -0.64 -27.26 5.83 22.22 0.13 -27.13 16 14 C -0.15 -6.38 9.53 22.46 0.21 -6.16 16 15 C -0.12 -5.54 10.02 22.22 0.22 -5.31 16 16 C -0.14 -7.17 8.70 22.73 0.20 -6.97 16 17 C 0.06 3.33 5.58 -21.29 -0.12 3.21 16 18 C -0.50 -25.55 9.05 23.46 0.21 -25.34 16 19 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 20 C 0.04 1.70 5.14 85.26 0.44 2.14 16 21 N -0.83 -41.74 10.95 21.83 0.24 -41.50 16 22 Si 0.98 36.51 29.59 68.60 2.03 38.54 16 23 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 26 C -0.14 -6.74 8.68 22.73 0.20 -6.54 16 27 C -0.10 -2.16 6.16 31.32 0.19 -1.97 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.30 8.06 -2.38 -0.02 1.28 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.68 8.04 -2.38 -0.02 1.66 16 35 H 0.43 9.07 8.64 -96.75 -0.84 8.23 16 36 H 0.13 4.83 7.60 -2.91 -0.02 4.81 16 37 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.11 5.84 6.15 -2.91 -0.02 5.82 16 39 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 40 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 41 H 0.08 1.78 7.39 -2.39 -0.02 1.76 16 42 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -65.05 369.98 -0.79 -65.84 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.20 Total: 34.83 kcal Atomic # 6 Polarization: -78.75 SS G_CDS: 3.57 Total: -75.18 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -0.66 Total: -71.10 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -4.39 Total: -83.46 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Atomic # 16 Polarization: 92.06 SS G_CDS: -1.54 Total: 90.52 kcal Total: -65.05 -0.79 -65.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795119001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.275 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds