Wall clock time and date at job start Tue Mar 31 2020 23:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47219 * 2 1 4 4 O 1.45192 * 109.47307 * 120.00457 * 2 1 3 5 5 C 1.34730 * 116.99829 * 269.99911 * 4 2 1 6 6 O 1.21485 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.47586 * 120.00172 * 179.97438 * 5 4 2 8 8 C 1.39649 * 120.12940 * 359.72255 * 7 5 4 9 9 C 1.38561 * 119.78530 * 179.78773 * 8 7 5 10 10 S 1.76197 * 119.97412 * 180.20875 * 9 8 7 11 11 C 1.39141 * 120.05933 * 0.49140 * 9 8 7 12 12 C 1.38102 * 120.27094 * 359.74407 * 11 9 8 13 13 C 1.38331 * 120.21340 * 0.02562 * 12 11 9 14 14 F 1.35096 * 120.03510 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46945 * 240.00533 * 2 1 3 16 16 O 1.21286 * 119.99593 * 256.02159 * 15 2 1 17 17 N 1.34772 * 120.00435 * 76.02662 * 15 2 1 18 18 C 1.46502 * 119.99593 * 5.36514 * 17 15 2 19 19 C 1.46503 * 120.00308 * 185.36300 * 17 15 2 20 20 C 1.50694 * 109.46946 * 89.99845 * 19 17 15 21 21 H 1.07996 * 120.00344 * 0.02562 * 20 19 17 22 22 C 1.37877 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47126 * 90.00572 * 24 22 20 26 26 H 1.48504 * 109.47419 * 210.00339 * 24 22 20 27 27 H 1.48498 * 109.47381 * 330.00674 * 24 22 20 28 28 H 1.08990 * 109.46930 * 306.13399 * 1 2 3 29 29 H 1.09005 * 109.47207 * 66.13344 * 1 2 3 30 30 H 1.09000 * 109.47059 * 186.13443 * 1 2 3 31 31 H 1.08001 * 120.11208 * 0.02562 * 8 7 5 32 32 H 1.34502 * 103.00350 * 270.28546 * 10 9 8 33 33 H 1.07991 * 119.86428 * 179.71507 * 11 9 8 34 34 H 1.07997 * 119.89517 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.47398 * 84.82850 * 18 17 15 36 36 H 1.09005 * 109.46546 * 204.81920 * 18 17 15 37 37 H 1.08991 * 109.47388 * 324.81793 * 18 17 15 38 38 H 1.09003 * 109.47053 * 210.00241 * 19 17 15 39 39 H 1.08997 * 109.46815 * 330.00044 * 19 17 15 40 40 H 0.97000 * 119.99819 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 1.1854 5 6 2.2180 0.0667 2.2851 6 8 1.9969 1.2609 2.2545 7 6 2.7087 -0.5613 3.5272 8 6 2.9572 -1.9349 3.5675 9 6 3.4220 -2.5164 4.7361 10 16 3.7423 -4.2481 4.7908 11 6 3.6305 -1.7349 5.8683 12 6 3.3810 -0.3771 5.8327 13 6 2.9212 0.2159 4.6705 14 9 2.6778 1.5444 4.6398 15 6 2.0323 -0.7103 -1.2306 16 8 2.4736 -1.8366 -1.1429 17 7 1.9912 -0.0940 -2.4284 18 6 1.5690 1.3060 -2.5177 19 6 2.3688 -0.8241 -3.6412 20 6 1.1506 -1.4916 -4.2254 21 1 0.1911 -1.3826 -3.7420 22 6 1.2609 -2.2406 -5.3777 23 7 2.4293 -2.3729 -5.9667 24 14 -0.2490 -3.0687 -6.1015 25 1 -0.9076 -2.1459 -7.0606 26 1 0.1580 -4.3096 -6.8085 27 1 -1.1977 -3.4088 -5.0109 28 1 -0.3633 0.6059 0.8299 29 1 -0.3634 0.4158 -0.9398 30 1 -0.3633 -1.0218 0.1098 31 1 2.7912 -2.5415 2.6895 32 1 2.5611 -4.7623 5.1774 33 1 3.9885 -2.1921 6.7788 34 1 3.5453 0.2238 6.7149 35 1 2.4229 1.9559 -2.3267 36 1 1.1775 1.5044 -3.5155 37 1 0.7926 1.4992 -1.7777 38 1 2.7861 -0.1282 -4.3691 39 1 3.1136 -1.5802 -3.3930 40 1 2.5070 -2.9002 -6.7771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798724069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:23 Heat of formation + Delta-G solvation = -123.429315 kcal Electronic energy + Delta-G solvation = -26971.398363 eV Core-core repulsion = 22792.991523 eV Total energy + Delta-G solvation = -4178.406841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.39083 -40.84193 -39.39944 -38.69056 -36.45849 -34.91435 -32.93948 -32.37727 -31.34748 -31.15739 -27.81491 -26.12563 -25.42027 -24.22935 -23.50391 -22.55584 -21.21847 -19.07948 -18.74082 -18.00732 -17.74920 -17.03805 -16.61602 -16.57806 -16.31239 -16.12168 -15.72594 -15.47969 -15.10647 -14.71571 -14.57224 -14.27651 -13.80540 -13.69949 -13.46325 -13.20372 -12.97387 -12.64099 -12.38404 -12.19045 -12.09883 -12.05074 -11.77214 -11.49433 -11.25521 -11.19271 -10.95203 -10.78954 -10.71073 -10.58465 -10.19861 -9.79942 -9.68335 -9.29839 -8.95542 -8.55326 -8.47428 -7.74926 -6.08277 -4.13770 -0.02822 0.38913 1.17061 2.02491 2.23358 2.46918 3.07014 3.19995 3.27822 3.34950 3.39150 3.55494 3.77607 4.04394 4.31220 4.40733 4.48957 4.64879 4.79005 4.87735 4.99164 5.06177 5.19622 5.26355 5.35064 5.45387 5.50046 5.58681 5.64030 5.70625 5.84752 6.03214 6.05734 6.20896 6.26523 6.95917 7.37772 7.43212 7.53706 7.87503 8.17131 8.25987 8.80457 8.95649 9.51431 10.99847 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.002716 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.225551 B =10306.796598 C =11632.055055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.319 6.319 5 C 0.507 3.493 6 O -0.494 6.494 7 C -0.166 4.166 8 C 0.019 3.981 9 C -0.138 4.138 10 S -0.109 6.109 11 C -0.009 4.009 12 C -0.175 4.175 13 C 0.191 3.809 14 F -0.107 7.107 15 C 0.510 3.490 16 O -0.519 6.519 17 N -0.595 5.595 18 C 0.073 3.927 19 C 0.246 3.754 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 4.815 24.525 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.234 6.234 5 C 0.351 3.649 6 O -0.382 6.382 7 C -0.170 4.170 8 C -0.002 4.002 9 C -0.250 4.250 10 S 0.048 5.952 11 C -0.030 4.030 12 C -0.196 4.196 13 C 0.171 3.829 14 F -0.085 7.085 15 C 0.294 3.706 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.071 4.071 19 C 0.127 3.873 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.183 0.817 32 H 0.042 0.958 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.078 3.648 24.286 24.583 hybrid contribution -2.087 0.698 -0.340 2.227 sum -1.010 4.346 23.947 24.359 Atomic orbital electron populations 1.22175 0.91945 1.04211 1.03936 1.22743 0.96143 0.97476 0.82258 0.87748 1.86645 1.76576 1.40831 1.19376 1.20751 0.75035 0.85130 0.83983 1.90884 1.47783 1.15359 1.84204 1.19224 1.11111 0.94663 0.91970 1.22098 0.87603 0.92524 0.97973 1.21245 1.09995 0.97270 0.96509 1.86300 1.19257 0.98295 1.91344 1.21747 0.91246 0.92307 0.97685 1.21164 1.04833 0.95911 0.97661 1.17840 0.94093 0.77961 0.93056 1.91637 1.90486 1.29647 1.96755 1.19707 0.80274 0.86846 0.83731 1.90700 1.45123 1.18334 1.85299 1.48075 1.65225 1.11921 1.07675 1.21845 0.99040 0.82642 1.03584 1.19378 0.96710 0.92086 0.79115 1.21418 0.94767 1.31547 1.09183 0.92359 1.24936 0.96255 0.96114 0.96732 1.69931 1.23168 1.40432 1.19630 0.86484 0.82757 0.79019 0.79087 1.20619 1.21032 1.19868 0.91230 0.89276 0.90571 0.81679 0.95753 0.83047 0.82861 0.93352 0.90015 0.92252 0.94601 0.93500 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.19 37.16 0.34 -2.00 16 2 C 0.07 1.20 2.14 -27.88 -0.06 1.14 16 3 H 0.10 1.60 6.32 -51.93 -0.33 1.27 16 4 O -0.32 -5.28 8.72 -47.10 -0.41 -5.69 16 5 C 0.51 7.56 7.87 34.54 0.27 7.83 16 6 O -0.49 -8.07 14.59 -19.25 -0.28 -8.35 16 7 C -0.17 -1.99 5.88 -104.95 -0.62 -2.60 16 8 C 0.02 0.20 9.35 -38.94 -0.36 -0.17 16 9 C -0.14 -1.21 6.10 -39.13 -0.24 -1.45 16 10 S -0.11 -0.94 25.77 -107.50 -2.77 -3.71 16 11 C -0.01 -0.06 9.78 -39.30 -0.38 -0.44 16 12 C -0.18 -1.21 10.00 -39.60 -0.40 -1.61 16 13 C 0.19 1.98 7.28 -38.94 -0.28 1.69 16 14 F -0.11 -1.30 15.54 2.25 0.03 -1.26 16 15 C 0.51 10.83 6.95 -10.99 -0.08 10.75 16 16 O -0.52 -13.20 16.13 -13.55 -0.22 -13.42 16 17 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 18 C 0.07 1.14 9.79 59.85 0.59 1.73 16 19 C 0.25 6.35 5.18 -5.19 -0.03 6.33 16 20 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 24 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.17 1.88 7.61 -52.49 -0.40 1.48 16 32 H 0.08 0.59 9.07 97.61 0.89 1.47 16 33 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 37 H 0.06 0.78 4.92 -51.93 -0.26 0.52 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -34.05 366.47 -7.90 -41.95 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.30 Total: -0.73 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.67 Total: 7.78 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.21 Total: -38.60 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.91 Total: -27.46 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.77 Total: -3.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.05 -7.90 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798724069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.480 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds