Wall clock time and date at job start Tue Mar 31 2020 23:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47211 * 2 1 4 4 C 1.46500 * 119.99985 * 270.00038 * 3 2 1 5 5 C 1.50704 * 109.46997 * 269.99815 * 4 3 2 6 6 H 1.08005 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99885 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99853 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47265 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46945 * 119.99882 * 9 7 5 12 12 H 1.48495 * 109.47516 * 240.00113 * 9 7 5 13 13 C 1.34775 * 120.00295 * 89.99523 * 3 2 1 14 14 O 1.21285 * 120.00485 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99775 * 0.02562 * 13 3 2 16 16 O 1.45208 * 109.46888 * 179.97438 * 15 13 3 17 17 C 1.34727 * 116.99583 * 180.02562 * 16 15 13 18 18 O 1.21494 * 120.00208 * 0.27069 * 17 16 15 19 19 C 1.47586 * 119.99834 * 180.02562 * 17 16 15 20 20 C 1.39645 * 120.13319 * 359.72152 * 19 17 16 21 21 C 1.38564 * 119.78742 * 179.74339 * 20 19 17 22 22 S 1.76201 * 119.97064 * 180.23217 * 21 20 19 23 23 C 1.39135 * 120.05741 * 0.53126 * 21 20 19 24 24 C 1.38102 * 120.27085 * 359.72429 * 23 21 20 25 25 C 1.38332 * 120.21700 * 0.02562 * 24 23 21 26 26 F 1.35095 * 120.03159 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.46969 * 59.99824 * 1 2 3 28 28 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46960 * 300.00154 * 1 2 3 30 30 H 1.08996 * 109.47227 * 239.99896 * 2 1 3 31 31 H 1.09002 * 109.46994 * 119.99679 * 2 1 3 32 32 H 1.08994 * 109.47391 * 29.99957 * 4 3 2 33 33 H 1.08997 * 109.47402 * 150.00137 * 4 3 2 34 34 H 0.96998 * 120.00551 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47158 * 59.99972 * 15 13 3 36 36 H 1.08995 * 109.47198 * 299.99162 * 15 13 3 37 37 H 1.07999 * 120.10631 * 0.02562 * 20 19 17 38 38 H 1.34495 * 102.99940 * 270.30031 * 22 21 20 39 39 H 1.07998 * 119.86329 * 179.69798 * 23 21 20 40 40 H 1.08005 * 119.89074 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9136 2.0966 -3.4168 10 1 6.6013 1.2414 -2.4162 11 1 5.9216 1.4169 -4.7371 12 1 6.6206 3.3979 -3.5256 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3072 2.1956 3.5759 17 6 2.1365 1.7097 4.8209 18 8 1.7401 0.5723 4.9801 19 6 2.4360 2.5574 5.9913 20 6 2.9021 3.8614 5.8116 21 6 3.1761 4.6528 6.9155 22 16 3.7586 6.3010 6.6942 23 6 2.9976 4.1451 8.1985 24 6 2.5418 2.8540 8.3791 25 6 2.2599 2.0558 7.2850 26 9 1.8147 0.7932 7.4660 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6753 3.5161 -4.4440 35 1 2.6228 0.4188 2.5299 36 1 0.9444 1.0116 2.5302 37 1 3.0443 4.2534 4.8153 38 1 5.0941 6.1472 6.6553 39 1 3.2167 4.7630 9.0567 40 1 2.4058 2.4660 9.3778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798724232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:55 Heat of formation + Delta-G solvation = -127.158917 kcal Electronic energy + Delta-G solvation = -26659.856259 eV Core-core repulsion = 22481.287691 eV Total energy + Delta-G solvation = -4178.568568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.39451 -40.74674 -39.33086 -38.74656 -36.45069 -35.33993 -32.87802 -32.28031 -31.18760 -30.20495 -29.17896 -26.67669 -24.87288 -23.50987 -23.10299 -22.63160 -21.46848 -19.07724 -18.56045 -18.00685 -17.75930 -17.05199 -16.80091 -16.50170 -16.43118 -16.11226 -15.94860 -15.51590 -15.20924 -14.67581 -14.54681 -14.23312 -13.79102 -13.64407 -13.49685 -13.31590 -13.08339 -12.72530 -12.55493 -12.16756 -12.08828 -12.04659 -11.66418 -11.26808 -11.19502 -10.97062 -10.90921 -10.75389 -10.66018 -10.56555 -10.17407 -9.79814 -9.67041 -9.29592 -9.04850 -8.54141 -8.47454 -7.78781 -6.08258 -4.13168 -0.02929 0.39243 1.18478 2.02112 2.21499 2.47362 3.06811 3.20615 3.27750 3.35682 3.39682 3.55302 3.74715 4.04444 4.32461 4.41809 4.49580 4.66823 4.81532 4.87531 5.05950 5.15935 5.22720 5.26612 5.33264 5.37073 5.45680 5.56135 5.61348 5.70818 5.96990 6.03714 6.16544 6.18276 6.42772 6.96228 7.36775 7.42708 7.51559 7.87749 8.17631 8.25726 8.80738 8.95872 9.52032 10.99952 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.002765 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.729427 B =10124.677155 C =11694.723374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.508 3.492 18 O -0.494 6.494 19 C -0.166 4.166 20 C 0.019 3.981 21 C -0.138 4.138 22 S -0.111 6.111 23 C -0.009 4.009 24 C -0.175 4.175 25 C 0.191 3.809 26 F -0.108 7.108 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 -1.377 23.750 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.351 3.649 18 O -0.383 6.383 19 C -0.170 4.170 20 C -0.002 4.002 21 C -0.250 4.250 22 S 0.047 5.953 23 C -0.030 4.030 24 C -0.196 4.196 25 C 0.170 3.830 26 F -0.085 7.085 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.184 0.816 38 H 0.044 0.956 39 H 0.170 0.830 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.389 -0.102 23.438 23.682 hybrid contribution 1.506 -1.825 -0.346 2.391 sum -1.883 -1.927 23.093 23.249 Atomic orbital electron populations 1.22235 0.96470 1.01739 1.02446 1.21522 0.93805 0.83914 1.03067 1.48206 1.63732 1.13415 1.07098 1.19344 0.96498 0.93735 0.77507 1.21461 0.96853 1.32063 1.06350 0.92350 1.24926 0.97903 0.94860 0.96348 1.69932 1.35625 1.33344 1.14330 0.86438 0.84557 0.78082 0.78314 1.19819 1.20943 1.20826 1.19658 0.79810 0.87156 0.84219 1.90719 1.44507 1.17438 1.86710 1.23046 1.02969 0.92572 0.84043 1.86578 1.78564 1.44748 1.13779 1.20735 0.75158 0.85470 0.83498 1.90904 1.42082 1.18597 1.86723 1.19204 1.11466 0.96103 0.90208 1.22117 0.87612 0.89820 1.00640 1.21248 1.10224 0.98338 0.95166 1.86249 1.07986 1.04041 1.97073 1.21750 0.90837 0.93598 0.96780 1.21164 1.05140 0.94641 0.98631 1.17835 0.92862 0.79944 0.92311 1.91636 1.85134 1.35951 1.95823 0.91744 0.91865 0.93117 0.89366 0.91749 0.94588 0.93638 0.92696 0.88444 0.88453 0.81597 0.95569 0.83044 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -12.18 2.46 -175.06 -0.43 -12.61 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.51 7.75 -10.98 -0.09 10.42 16 14 O -0.52 -12.99 16.08 -14.11 -0.23 -13.22 16 15 C 0.05 0.82 4.51 36.01 0.16 0.98 16 16 O -0.32 -5.26 9.00 -47.24 -0.43 -5.68 16 17 C 0.51 7.48 7.89 34.54 0.27 7.75 16 18 O -0.49 -8.03 15.12 -19.26 -0.29 -8.32 16 19 C -0.17 -1.98 5.88 -104.95 -0.62 -2.59 16 20 C 0.02 0.20 9.35 -38.94 -0.36 -0.16 16 21 C -0.14 -1.21 6.10 -39.13 -0.24 -1.45 16 22 S -0.11 -0.96 25.77 -107.50 -2.77 -3.73 16 23 C -0.01 -0.06 9.78 -39.30 -0.38 -0.44 16 24 C -0.18 -1.21 10.00 -39.60 -0.40 -1.61 16 25 C 0.19 1.97 7.28 -38.94 -0.28 1.68 16 26 F -0.11 -1.29 15.54 2.25 0.03 -1.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 30 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 35 H 0.10 1.41 7.40 -51.93 -0.38 1.03 16 36 H 0.10 1.35 7.18 -51.93 -0.37 0.98 16 37 H 0.17 1.92 7.61 -52.49 -0.40 1.52 16 38 H 0.08 0.64 9.07 97.61 0.89 1.52 16 39 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -33.96 369.84 -8.28 -42.25 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.44 Total: -1.32 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.02 Total: 7.15 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.31 Total: -38.07 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.94 Total: -27.22 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.77 Total: -3.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.96 -8.28 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798724232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.913 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds