Wall clock time and date at job start Wed Apr 1 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41596 * 113.99720 * 2 1 4 4 C 1.46499 * 120.00343 * 90.00273 * 3 2 1 5 5 C 1.50701 * 109.46992 * 254.99543 * 4 3 2 6 6 C 1.38241 * 119.98648 * 269.72558 * 5 4 3 7 7 C 1.38215 * 120.00743 * 179.72780 * 6 5 4 8 8 C 1.38349 * 119.98879 * 0.54512 * 7 6 5 9 9 Cl 1.73606 * 120.01120 * 179.70588 * 8 7 6 10 10 C 1.38346 * 119.97570 * 359.73013 * 8 7 6 11 11 C 1.38215 * 119.98756 * 359.97438 * 10 8 7 12 12 C 1.34785 * 119.99566 * 269.99744 * 3 2 1 13 13 O 1.21588 * 119.99625 * 180.02562 * 12 3 2 14 14 N 1.34767 * 120.00289 * 0.02562 * 12 3 2 15 15 C 1.46498 * 119.99993 * 179.97438 * 14 12 3 16 16 C 1.50706 * 109.47243 * 180.02562 * 15 14 12 17 17 O 1.21299 * 119.99819 * 0.02562 * 16 15 14 18 18 N 1.34765 * 120.00333 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00335 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00036 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00329 * 179.97438 * 19 18 16 22 22 N 1.31418 * 120.00031 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47340 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47334 * 120.00340 * 23 21 19 26 26 H 1.48504 * 109.47226 * 240.00059 * 23 21 19 27 27 H 1.08998 * 109.47000 * 299.99988 * 1 2 3 28 28 H 1.09003 * 109.47535 * 60.00067 * 1 2 3 29 29 H 1.09003 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47391 * 134.99533 * 4 3 2 31 31 H 1.09001 * 109.46813 * 14.99590 * 4 3 2 32 32 H 1.07995 * 119.99451 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.00426 * 180.27387 * 7 6 5 34 34 H 1.08006 * 120.01050 * 179.97438 * 10 8 7 35 35 H 1.07995 * 119.99616 * 179.97438 * 11 10 8 36 36 H 0.97001 * 119.99981 * 0.02562 * 14 12 3 37 37 H 1.09000 * 109.47404 * 299.99731 * 15 14 12 38 38 H 1.08992 * 109.47316 * 60.00310 * 15 14 12 39 39 H 0.97003 * 119.99764 * 0.02562 * 18 16 15 40 40 H 0.97000 * 119.99807 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 1.2687 5 6 1.2808 3.0414 1.5198 6 6 1.5053 4.3262 1.0615 7 6 0.5657 5.3145 1.2867 8 6 -0.5945 5.0204 1.9806 9 17 -1.7716 6.2631 2.2704 10 6 -0.8160 3.7358 2.4439 11 6 0.1215 2.7468 2.2129 12 6 2.2790 1.9091 -1.1673 13 8 2.7739 3.0197 -1.1673 14 7 2.0045 1.2937 -2.3344 15 6 2.3019 1.9631 -3.6031 16 6 1.9026 1.0688 -4.7486 17 8 1.4169 -0.0203 -4.5269 18 7 2.0842 1.4796 -6.0192 19 6 1.7215 0.6659 -7.0613 20 1 1.2898 -0.3042 -6.8639 21 6 1.9082 1.0897 -8.3713 22 7 2.4331 2.2703 -8.6115 23 14 1.4133 -0.0188 -9.7911 24 1 0.8501 -1.2850 -9.2575 25 1 0.3901 0.6667 -10.6209 26 1 2.6058 -0.3189 -10.6237 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.2966 2.4081 1.2200 31 1 2.2701 1.2352 2.0797 32 1 2.4132 4.5567 0.5240 33 1 0.7391 6.3171 0.9248 34 1 -1.7214 3.5057 2.9861 35 1 -0.0511 1.7441 2.5749 36 1 1.6093 0.4079 -2.3344 37 1 1.7437 2.8975 -3.6606 38 1 3.3697 2.1736 -3.6613 39 1 2.4723 2.3508 -6.1965 40 1 2.5638 2.5659 -9.5261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813164550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:42 Heat of formation + Delta-G solvation = -35.925400 kcal Electronic energy + Delta-G solvation = -26812.836192 eV Core-core repulsion = 22656.100061 eV Total energy + Delta-G solvation = -4156.736131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 18.40 seconds Orbital eigenvalues (eV) -40.39517 -39.34209 -38.27601 -37.33553 -36.75433 -34.63470 -33.92770 -33.43016 -31.41475 -31.34126 -30.98191 -27.94002 -26.88960 -25.70566 -24.25209 -23.13857 -21.92458 -20.44143 -19.63688 -18.80412 -18.08013 -17.58968 -16.93248 -16.36083 -15.86702 -15.65216 -15.36478 -15.02875 -14.86896 -14.78678 -14.40106 -14.16583 -14.11407 -13.78661 -13.70076 -13.59749 -13.42288 -12.82611 -12.25637 -12.11622 -12.06002 -11.87009 -11.66614 -11.63644 -11.57790 -11.14937 -11.09346 -10.77757 -10.41414 -10.33313 -10.11139 -9.65293 -9.33254 -9.22571 -8.90967 -8.66074 -8.63414 -8.10584 -6.52116 -3.93995 0.71523 1.05109 1.82367 1.86127 3.09012 3.11993 3.21991 3.28146 3.35786 3.45654 3.73796 4.10735 4.41544 4.51250 4.61808 4.77501 4.86231 4.90836 5.04932 5.10314 5.15432 5.16554 5.26613 5.34342 5.45335 5.49404 5.73704 5.85165 5.89638 5.96079 6.00339 6.06185 6.26078 6.31868 6.53350 6.69064 6.96163 7.45806 7.91806 8.07299 8.44323 8.58282 9.04299 9.38703 9.86635 10.64870 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.002364 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.443425 B =11840.396370 C =12712.479470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.142 6.142 3 N -0.493 5.493 4 C 0.180 3.820 5 C -0.115 4.115 6 C -0.066 4.066 7 C -0.116 4.116 8 C -0.028 4.028 9 Cl -0.075 7.075 10 C -0.120 4.120 11 C -0.094 4.094 12 C 0.716 3.284 13 O -0.577 6.577 14 N -0.715 5.715 15 C 0.126 3.874 16 C 0.428 3.572 17 O -0.596 6.596 18 N -0.549 5.549 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.396 0.604 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 3.706 23.101 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.146 6.146 3 N -0.276 5.276 4 C 0.059 3.941 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.134 4.134 8 C -0.055 4.055 9 Cl -0.046 7.046 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.418 3.582 13 O -0.455 6.455 14 N -0.372 5.372 15 C -0.002 4.002 16 C 0.214 3.786 17 O -0.482 6.482 18 N -0.184 5.184 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.251 0.749 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.727 3.799 23.013 23.620 hybrid contribution -0.790 -0.214 -0.904 1.219 sum -4.517 3.585 22.109 22.848 Atomic orbital electron populations 1.23465 0.81809 1.03927 1.01632 1.90666 1.20099 1.07105 1.96710 1.49368 1.62662 1.10622 1.04918 1.20453 0.97297 0.92197 0.84178 1.20443 0.96706 0.95543 0.98974 1.21368 0.99649 0.91538 0.95913 1.21152 0.92681 1.00810 0.98790 1.21018 0.92240 0.90254 1.02002 1.98373 1.57818 1.53464 1.94948 1.20981 1.00338 0.91230 1.01284 1.21016 0.93061 0.98951 0.98245 1.15755 0.79300 0.83384 0.79754 1.90902 1.51411 1.18225 1.84992 1.44818 1.66520 1.22438 1.03422 1.20847 1.01800 0.95498 0.82096 1.19733 0.86197 0.88540 0.84143 1.90504 1.50465 1.23214 1.84056 1.41785 1.53981 1.18721 1.03907 1.19771 1.38738 1.00794 0.84006 0.87641 1.25324 0.96813 0.96708 0.98903 1.69624 1.43356 1.18611 1.21885 0.85763 0.78238 0.79855 0.80260 1.19143 1.20624 1.20594 0.92879 0.92565 0.87536 0.87932 0.88242 0.83466 0.84824 0.85038 0.85285 0.74900 0.89947 0.89760 0.77028 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.39 101.05 1.15 1.05 16 2 O -0.14 -1.74 10.55 -11.47 -0.12 -1.86 16 3 N -0.49 -6.32 3.01 -66.41 -0.20 -6.52 16 4 C 0.18 1.75 5.85 -5.19 -0.03 1.72 16 5 C -0.11 -1.15 5.25 -104.62 -0.55 -1.70 16 6 C -0.07 -0.72 8.78 -39.59 -0.35 -1.07 16 7 C -0.12 -1.21 9.83 -39.55 -0.39 -1.60 16 8 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 9 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 10 C -0.12 -1.07 9.83 -39.55 -0.39 -1.46 16 11 C -0.09 -0.81 8.92 -39.59 -0.35 -1.16 16 12 C 0.72 11.44 8.23 -86.92 -0.72 10.72 16 13 O -0.58 -9.94 13.90 5.29 0.07 -9.87 16 14 N -0.72 -12.38 5.50 -66.42 -0.37 -12.74 16 15 C 0.13 2.32 6.15 -5.19 -0.03 2.29 16 16 C 0.43 9.82 7.85 -10.99 -0.09 9.73 16 17 O -0.60 -15.32 15.24 5.54 0.08 -15.23 16 18 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 19 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 20 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.79 13.05 55.50 0.72 -23.06 16 23 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H 0.05 0.43 6.47 -51.93 -0.34 0.10 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.98 7.84 -51.93 -0.41 0.57 16 31 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.15 1.73 6.78 -52.49 -0.36 1.37 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 0.83 7.26 -52.49 -0.38 0.45 16 36 H 0.41 7.37 6.51 -40.82 -0.27 7.11 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -31.00 364.93 -7.65 -38.65 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -4.53 Total: 15.32 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -2.23 Total: 10.19 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.10 Total: -55.93 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.04 Total: -26.96 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.00 -7.65 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813164550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.724 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.40 seconds