Wall clock time and date at job start Tue Mar 31 2020 23:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46796 * 2 1 4 4 C 1.52999 * 109.47347 * 120.00097 * 2 1 3 5 5 S 1.81406 * 109.46845 * 295.00045 * 4 2 1 6 6 C 1.76197 * 102.99679 * 180.02562 * 5 4 2 7 7 C 1.38935 * 120.05982 * 359.72502 * 6 5 4 8 8 C 1.38103 * 119.95053 * 179.72243 * 7 6 5 9 9 C 1.38474 * 120.04900 * 0.55231 * 8 7 6 10 10 F 1.35102 * 119.94259 * 179.69551 * 9 8 7 11 11 C 1.38477 * 120.11497 * 359.72612 * 9 8 7 12 12 C 1.38101 * 120.05388 * 359.97438 * 11 9 8 13 13 C 1.50702 * 109.47082 * 240.00353 * 2 1 3 14 14 O 1.21293 * 119.99376 * 252.93055 * 13 2 1 15 15 N 1.34771 * 120.00337 * 72.92737 * 13 2 1 16 16 C 1.37103 * 119.99837 * 5.74711 * 15 13 2 17 17 H 1.07999 * 120.00100 * 346.20177 * 16 15 13 18 18 C 1.38950 * 119.99746 * 166.19966 * 16 15 13 19 19 N 1.31405 * 120.00312 * 359.33756 * 18 16 15 20 20 Si 1.86805 * 119.99952 * 179.33401 * 18 16 15 21 21 H 1.48502 * 109.46903 * 59.99709 * 20 18 16 22 22 H 1.48496 * 109.47223 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47192 * 300.00434 * 20 18 16 24 24 C 1.46496 * 120.00330 * 185.74902 * 15 13 2 25 25 C 1.50703 * 109.47115 * 263.33804 * 24 15 13 26 26 O 1.20831 * 119.99838 * 0.02562 * 25 24 15 27 27 O 1.34221 * 120.00474 * 179.97438 * 25 24 15 28 28 H 1.08993 * 109.47788 * 55.10911 * 1 2 3 29 29 H 1.09006 * 109.47333 * 295.10690 * 1 2 3 30 30 H 1.09001 * 109.46866 * 175.11524 * 1 2 3 31 31 H 1.08994 * 109.47174 * 54.99666 * 4 2 1 32 32 H 1.08998 * 109.47089 * 175.00235 * 4 2 1 33 33 H 1.08010 * 120.02386 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.97439 * 180.25185 * 8 7 6 35 35 H 1.07998 * 119.97513 * 179.97438 * 11 9 8 36 36 H 1.07998 * 120.03071 * 179.97438 * 12 11 9 37 37 H 0.97007 * 120.00495 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46840 * 23.33425 * 24 15 13 39 39 H 1.09002 * 109.47425 * 143.33964 * 24 15 13 40 40 H 0.96694 * 117.00596 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 0.2156 2.7266 6 6 2.2235 -0.7512 4.0418 7 6 2.9116 -1.9257 3.7636 8 6 3.4357 -2.6787 4.7959 9 6 3.2658 -2.2700 6.1080 10 9 3.7741 -3.0115 7.1165 11 6 2.5754 -1.1028 6.3883 12 6 2.0549 -0.3430 5.3592 13 6 2.0323 -0.7103 -1.2305 14 8 2.5251 -1.8145 -1.1346 15 7 1.9339 -0.1189 -2.4375 16 6 1.4865 1.1736 -2.5331 17 1 1.0061 1.6427 -1.6871 18 6 1.6511 1.8799 -3.7183 19 7 2.2472 1.3136 -4.7433 20 14 1.0248 3.6345 -3.8546 21 1 1.6974 4.4807 -2.8363 22 1 1.3219 4.1622 -5.2105 23 1 -0.4422 3.6558 -3.6250 24 6 2.3049 -0.8568 -3.6474 25 6 3.7201 -0.5105 -4.0329 26 8 4.3538 0.2722 -3.3652 27 8 4.2769 -1.0721 -5.1174 28 1 -0.3634 0.5878 -0.8428 29 1 -0.3634 0.4361 0.9306 30 1 -0.3633 -1.0240 -0.0875 31 1 1.6054 -1.7197 1.2951 32 1 3.1263 -0.7994 1.2055 33 1 3.0409 -2.2470 2.7406 34 1 3.9741 -3.5897 4.5799 35 1 2.4439 -0.7863 7.4124 36 1 1.5161 0.5670 5.5782 37 1 2.3625 1.8068 -5.5706 38 1 2.2321 -1.9275 -3.4565 39 1 1.6304 -0.5858 -4.4596 40 1 5.1869 -0.8193 -5.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827580519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:48 Heat of formation + Delta-G solvation = -152.329656 kcal Electronic energy + Delta-G solvation = -26904.731969 eV Core-core repulsion = 22725.071915 eV Total energy + Delta-G solvation = -4179.660053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 18.17 seconds Orbital eigenvalues (eV) -49.91452 -41.30884 -40.13992 -39.79397 -37.15017 -36.33880 -35.47443 -33.45435 -32.28400 -31.60309 -29.88106 -28.22814 -26.84006 -24.57840 -23.84712 -23.72103 -22.18607 -20.97973 -19.16700 -18.79341 -18.60877 -18.42237 -18.05507 -17.31800 -17.29233 -16.62403 -16.54347 -16.23678 -16.08988 -16.03975 -15.56582 -15.34222 -14.93825 -14.62454 -14.45974 -14.36798 -14.07012 -13.76652 -13.56645 -13.48645 -13.22071 -12.97816 -12.87099 -12.70694 -12.49236 -12.18921 -12.14806 -12.10957 -12.07762 -12.05156 -11.47548 -11.24362 -10.96387 -10.58875 -10.41692 -10.20488 -9.97200 -8.37345 -8.34903 -5.97664 -0.05563 0.16054 0.40122 1.33683 1.41984 1.48364 1.57437 1.78016 1.94732 2.25441 2.44431 2.54097 2.94687 3.22775 3.24638 3.66692 3.68814 3.84373 3.86404 4.06766 4.17211 4.29065 4.36673 4.52076 4.61129 4.63647 4.69110 4.85485 4.91681 4.95074 5.02552 5.06470 5.09154 5.10787 5.15157 5.25963 5.48718 5.67511 5.77031 5.99521 6.31331 7.04665 7.40931 7.49526 7.81712 8.67226 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002786 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.782603 B =10047.588361 C =11156.306516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.095 0.905 4 C -0.077 4.077 5 S -0.086 6.086 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.075 3.925 10 F -0.145 7.145 11 C -0.128 4.128 12 C -0.074 4.074 13 C 0.464 3.536 14 O -0.630 6.630 15 N -0.439 5.439 16 C -0.333 4.333 17 H 0.125 0.875 18 C -0.007 4.007 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.254 1.254 24 C 0.156 3.844 25 C 0.512 3.488 26 O -0.565 6.565 27 O -0.524 6.524 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -1.756 13.639 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.113 0.887 4 C -0.226 4.226 5 S 0.160 5.840 6 C -0.220 4.220 7 C -0.142 4.142 8 C -0.157 4.157 9 C 0.054 3.946 10 F -0.123 7.123 11 C -0.148 4.148 12 C -0.097 4.097 13 C 0.253 3.747 14 O -0.519 6.519 15 N -0.156 5.156 16 C -0.459 4.459 17 H 0.142 0.858 18 C -0.206 4.206 19 N -0.552 5.552 20 Si 0.821 3.179 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.178 1.178 24 C 0.030 3.970 25 C 0.356 3.644 26 O -0.456 6.456 27 O -0.336 6.336 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.000 -1.074 13.687 14.300 hybrid contribution 1.785 -0.484 -0.818 2.022 sum -2.215 -1.558 12.870 13.151 Atomic orbital electron populations 1.21799 0.90808 1.02864 1.03902 1.20691 0.99188 0.99905 0.89584 0.88682 1.23376 1.03774 1.01706 0.93703 1.85188 1.69356 1.33443 0.96043 1.22095 1.02971 0.98800 0.98180 1.21207 0.98570 0.94408 0.99998 1.21209 1.01774 1.01826 0.90862 1.17853 0.99731 0.92523 0.84542 1.91486 1.85430 1.76121 1.59289 1.21334 0.98319 0.93387 1.01753 1.20882 0.99290 1.00544 0.89014 1.20615 0.82165 0.86823 0.85102 1.90511 1.51175 1.23549 1.86615 1.43599 1.55237 1.13171 1.03613 1.20224 1.36525 0.87851 1.01323 0.85796 1.26074 0.95968 1.03637 0.94876 1.69546 1.42630 1.38743 1.04307 0.84894 0.79269 0.76598 0.77112 1.19937 1.21428 1.17773 1.20662 0.90602 0.95175 0.90519 1.23544 0.88883 0.75932 0.76090 1.90514 1.64622 1.35340 1.55116 1.84450 1.35092 1.67709 1.46337 0.90934 0.89425 0.92481 0.88888 0.90687 0.85245 0.83309 0.81565 0.82347 0.91763 0.90237 0.85133 0.73302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.81 71.98 0.63 -3.46 16 2 C -0.07 -2.56 1.87 -11.54 -0.02 -2.58 16 3 H 0.10 3.53 7.15 -2.39 -0.02 3.51 16 4 C -0.08 -2.44 3.08 71.98 0.22 -2.22 16 5 S -0.09 -2.22 20.65 -56.49 -1.17 -3.39 16 6 C -0.11 -2.56 6.11 22.61 0.14 -2.43 16 7 C -0.12 -2.89 9.36 22.40 0.21 -2.68 16 8 C -0.14 -2.99 10.02 22.29 0.22 -2.77 16 9 C 0.08 1.58 7.30 22.38 0.16 1.74 16 10 F -0.14 -3.12 17.26 44.97 0.78 -2.34 16 11 C -0.13 -2.24 10.02 22.29 0.22 -2.01 16 12 C -0.07 -1.40 9.79 22.41 0.22 -1.18 16 13 C 0.46 21.18 6.86 87.66 0.60 21.78 16 14 O -0.63 -31.56 15.60 -3.07 -0.05 -31.61 16 15 N -0.44 -21.06 2.18 -639.60 -1.39 -22.45 16 16 C -0.33 -15.62 8.40 84.04 0.71 -14.92 16 17 H 0.12 5.26 5.06 -2.91 -0.01 5.24 16 18 C -0.01 -0.32 5.26 84.93 0.45 0.12 16 19 N -0.91 -45.08 7.74 21.66 0.17 -44.91 16 20 Si 1.00 38.01 29.55 68.60 2.03 40.04 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.29 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 24 C 0.16 7.40 5.35 85.63 0.46 7.86 16 25 C 0.51 24.93 6.01 71.24 0.43 25.35 16 26 O -0.57 -31.39 16.54 21.95 0.36 -31.02 16 27 O -0.52 -20.89 13.42 -51.33 -0.69 -21.58 16 28 H 0.07 2.27 6.39 -2.39 -0.02 2.26 16 29 H 0.09 2.20 6.98 -2.38 -0.02 2.19 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 2.94 7.70 -2.39 -0.02 2.93 16 32 H 0.07 2.61 7.75 -2.39 -0.02 2.59 16 33 H 0.13 3.36 5.88 -2.91 -0.02 3.35 16 34 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.27 13.09 8.31 -92.70 -0.77 12.32 16 38 H 0.08 3.62 7.31 -2.39 -0.02 3.61 16 39 H 0.13 6.22 6.36 -2.39 -0.02 6.21 16 40 H 0.41 12.53 9.10 -74.06 -0.67 11.86 16 Total: -1.00 -63.57 352.81 5.13 -58.44 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.44 Total: 36.22 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 4.65 Total: 22.60 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.23 Total: -67.37 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -0.37 Total: -84.21 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -1.17 Total: -3.39 kcal Total: -63.57 5.13 -58.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827580519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.888 kcal (2) G-P(sol) polarization free energy of solvation -63.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.17 seconds