Wall clock time and date at job start Tue Mar 31 2020 23:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46892 * 2 1 4 4 C 1.34773 * 116.99799 * 180.02562 * 3 2 1 5 5 O 1.21525 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47335 * 120.00126 * 180.02562 * 4 3 2 7 7 C 1.39874 * 120.06637 * 180.02562 * 6 4 3 8 8 C 1.37573 * 119.96537 * 180.27562 * 7 6 4 9 9 C 1.39241 * 120.10262 * 359.51300 * 8 7 6 10 10 S 1.76197 * 119.94180 * 180.21087 * 9 8 7 11 11 C 1.81405 * 102.99702 * 0.25011 * 10 9 8 12 12 C 1.50707 * 109.46863 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99911 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99422 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99579 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47144 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99488 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99787 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99435 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47416 * 59.99995 * 20 18 16 22 22 H 1.48506 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47139 * 299.99631 * 20 18 16 24 24 C 1.39478 * 120.12307 * 0.46229 * 9 8 7 25 25 F 1.35102 * 119.98417 * 179.77089 * 24 9 8 26 26 C 1.37720 * 120.03454 * 359.79287 * 24 9 8 27 27 H 1.09003 * 109.47054 * 299.99262 * 1 2 3 28 28 H 1.08998 * 109.47682 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47054 * 240.00738 * 2 1 3 31 31 H 1.08998 * 109.47240 * 120.00353 * 2 1 3 32 32 H 1.08002 * 120.01223 * 359.97438 * 7 6 4 33 33 H 1.08003 * 119.94820 * 179.72178 * 8 7 6 34 34 H 1.08996 * 109.47187 * 299.99979 * 11 10 9 35 35 H 1.09005 * 109.47019 * 60.00088 * 11 10 9 36 36 H 0.96998 * 120.00468 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.47187 * 299.99661 * 15 14 12 38 38 H 1.09005 * 109.47088 * 59.99814 * 15 14 12 39 39 H 0.97000 * 119.99500 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.05394 * 180.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3500 1.5456 -0.0005 5 8 4.0903 0.5819 -0.0015 6 6 3.9132 2.9071 0.0000 7 6 5.2997 3.0919 -0.0011 8 6 5.8233 4.3641 0.0051 9 6 4.9752 5.4684 0.0023 10 16 5.6504 7.0959 0.0047 11 6 7.4394 6.7953 0.0031 12 6 8.1701 8.1134 0.0043 13 8 7.5456 9.1530 0.0056 14 7 9.5177 8.1367 0.0028 15 6 10.2281 9.4179 0.0034 16 6 11.7143 9.1683 0.0022 17 1 12.0918 8.1564 0.0007 18 6 12.5920 10.2317 0.0019 19 7 12.1321 11.4638 0.0033 20 14 14.4341 9.9221 -0.0003 21 1 14.8050 9.1506 -1.2137 22 1 15.1542 11.2209 0.0004 23 1 14.8077 9.1490 1.2113 24 6 3.5920 5.2887 0.0029 25 9 2.7717 6.3622 0.0048 26 6 3.0620 4.0176 0.0019 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9587 2.2363 -0.0019 33 1 6.8939 4.5065 0.0088 34 1 7.7131 6.2269 0.8919 35 1 7.7120 6.2299 -0.8881 36 1 10.0172 7.3052 0.0014 37 1 9.9540 9.9857 -0.8857 38 1 9.9558 9.9839 0.8943 39 1 12.7496 12.2118 0.0027 40 1 1.9911 3.8781 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842660559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:45 Heat of formation + Delta-G solvation = -145.415623 kcal Electronic energy + Delta-G solvation = -25101.860235 eV Core-core repulsion = 20922.499997 eV Total energy + Delta-G solvation = -4179.360238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.16665 -40.94972 -38.97662 -38.96538 -36.94799 -34.38978 -32.76403 -32.48456 -31.69817 -31.02733 -30.12145 -26.96442 -25.62108 -23.62696 -23.13448 -22.58430 -21.49055 -20.12065 -18.87925 -18.11021 -17.62568 -17.07597 -16.99349 -16.57096 -16.24080 -15.97945 -15.97585 -15.37655 -15.36657 -14.71045 -14.60066 -14.51563 -14.17457 -13.91237 -13.53538 -13.27365 -13.21441 -12.93615 -12.81103 -12.60961 -12.37556 -12.06903 -12.06202 -11.95743 -11.76807 -11.07691 -10.99719 -10.95952 -10.93701 -10.43029 -10.38450 -10.29820 -9.52256 -9.42573 -9.37646 -8.84221 -8.09429 -7.67650 -6.24302 -4.32437 0.00372 0.71410 1.01387 1.97796 2.05766 2.16501 3.02142 3.11395 3.20504 3.25711 3.26949 3.69910 3.78752 4.11420 4.27801 4.29872 4.45343 4.48802 4.56675 4.70305 4.78548 4.86188 4.95100 5.02156 5.12072 5.14994 5.25996 5.29079 5.31132 5.47300 5.48487 5.55360 5.72429 5.97356 6.21946 7.14482 7.19485 7.30035 7.38841 7.52731 7.86218 8.38724 8.61309 8.85473 9.34152 10.85665 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001792 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.729142 B =15617.899621 C =16709.576175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.516 3.484 5 O -0.504 6.504 6 C -0.121 4.121 7 C -0.037 4.037 8 C -0.127 4.127 9 C -0.104 4.104 10 S 0.022 5.978 11 C -0.163 4.163 12 C 0.516 3.484 13 O -0.536 6.536 14 N -0.702 5.702 15 C 0.250 3.750 16 C -0.548 4.548 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.100 3.900 25 F -0.123 7.123 26 C -0.074 4.074 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.268 0.732 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.395 -22.663 -0.007 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.361 3.639 5 O -0.394 6.394 6 C -0.126 4.126 7 C -0.057 4.057 8 C -0.152 4.152 9 C -0.219 4.219 10 S 0.271 5.729 11 C -0.314 4.314 12 C 0.298 3.702 13 O -0.414 6.414 14 N -0.350 5.350 15 C 0.129 3.871 16 C -0.586 4.586 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.520 5.520 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.073 3.927 25 F -0.101 7.101 26 C -0.095 4.095 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.031 -20.706 -0.003 29.513 hybrid contribution 1.845 -1.794 -0.006 2.573 sum -19.186 -22.500 -0.009 29.570 Atomic orbital electron populations 1.21824 0.92367 1.03160 1.03729 1.23082 0.95492 0.79636 1.02851 1.86555 1.23595 1.32782 1.84171 1.20871 0.80721 0.89509 0.72801 1.90863 1.60381 1.42236 1.45890 1.18797 0.93588 0.89621 1.10581 1.21191 0.93237 0.97754 0.93513 1.21048 0.99935 0.90745 1.03484 1.22889 0.95500 1.01333 1.02227 1.86739 0.99876 0.97927 1.88362 1.24100 0.96540 1.02939 1.07827 1.19354 0.83676 0.88540 0.78671 1.90737 1.66691 1.33543 1.50457 1.46397 1.04477 1.12479 1.71696 1.19205 0.90565 0.79178 0.98102 1.21152 0.90203 0.93359 1.53925 0.91845 1.24947 0.99623 0.94802 0.94523 1.69959 1.35496 0.98224 1.48365 0.86449 0.83964 0.77633 0.78712 1.20031 1.20995 1.20034 1.16792 0.85866 0.83831 1.06184 1.91568 1.71218 1.53508 1.93816 1.21285 1.01469 0.89620 0.97094 0.91319 0.91325 0.90057 0.90989 0.90988 0.83475 0.83726 0.86390 0.86388 0.77399 0.95181 0.95185 0.92257 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.29 37.16 0.38 -0.22 16 2 C 0.06 0.39 6.20 37.16 0.23 0.62 16 3 O -0.35 -3.01 9.46 -40.69 -0.38 -3.40 16 4 C 0.52 5.13 7.88 34.43 0.27 5.40 16 5 O -0.50 -6.06 16.13 -19.29 -0.31 -6.37 16 6 C -0.12 -1.13 5.88 -104.96 -0.62 -1.75 16 7 C -0.04 -0.32 9.58 -39.21 -0.38 -0.70 16 8 C -0.13 -1.14 9.34 -39.45 -0.37 -1.51 16 9 C -0.10 -1.15 6.13 -38.75 -0.24 -1.39 16 10 S 0.02 0.30 20.66 -107.50 -2.22 -1.92 16 11 C -0.16 -2.00 4.81 36.01 0.17 -1.83 16 12 C 0.52 9.44 7.85 -10.98 -0.09 9.36 16 13 O -0.54 -12.24 15.86 5.56 0.09 -12.15 16 14 N -0.70 -13.57 5.55 -61.47 -0.34 -13.91 16 15 C 0.25 6.32 5.43 -5.19 -0.03 6.29 16 16 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 17 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 18 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.38 13.29 55.43 0.74 -24.65 16 20 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 C 0.10 1.09 7.26 -39.31 -0.29 0.80 16 25 F -0.12 -1.50 16.75 2.25 0.04 -1.46 16 26 C -0.07 -0.67 9.58 -39.14 -0.37 -1.05 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 1.12 7.64 -52.49 -0.40 0.72 16 33 H 0.15 1.00 5.86 -52.48 -0.31 0.70 16 34 H 0.12 1.13 7.73 -51.93 -0.40 0.72 16 35 H 0.12 1.13 7.75 -51.92 -0.40 0.72 16 36 H 0.39 6.25 8.32 -40.82 -0.34 5.91 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.15 1.13 7.60 -52.49 -0.40 0.73 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -32.97 371.31 -8.30 -41.27 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.74 Total: 0.65 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.73 Total: 1.10 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.40 Total: -38.56 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.61 Total: -21.92 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.22 Total: -1.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.97 -8.30 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842660559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.146 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds