Wall clock time and date at job start Tue Mar 31 2020 23:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46892 * 2 1 4 4 C 1.34773 * 116.99799 * 180.02562 * 3 2 1 5 5 O 1.21525 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.47335 * 120.00126 * 180.02562 * 4 3 2 7 7 C 1.39874 * 120.06637 * 180.02562 * 6 4 3 8 8 C 1.37573 * 119.96537 * 180.27562 * 7 6 4 9 9 C 1.39241 * 120.10262 * 359.51300 * 8 7 6 10 10 S 1.76197 * 119.94180 * 180.21087 * 9 8 7 11 11 C 1.81405 * 102.99702 * 0.25011 * 10 9 8 12 12 C 1.50707 * 109.46863 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99911 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99422 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99579 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47144 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99488 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99787 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99435 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47416 * 59.99995 * 20 18 16 22 22 H 1.48506 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47139 * 299.99631 * 20 18 16 24 24 C 1.39478 * 120.12307 * 0.46229 * 9 8 7 25 25 F 1.35102 * 119.98417 * 179.77089 * 24 9 8 26 26 C 1.37720 * 120.03454 * 359.79287 * 24 9 8 27 27 H 1.09003 * 109.47054 * 299.99262 * 1 2 3 28 28 H 1.08998 * 109.47682 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47054 * 240.00738 * 2 1 3 31 31 H 1.08998 * 109.47240 * 120.00353 * 2 1 3 32 32 H 1.08002 * 120.01223 * 359.97438 * 7 6 4 33 33 H 1.08003 * 119.94820 * 179.72178 * 8 7 6 34 34 H 1.08996 * 109.47187 * 299.99979 * 11 10 9 35 35 H 1.09005 * 109.47019 * 60.00088 * 11 10 9 36 36 H 0.96998 * 120.00468 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.47187 * 299.99661 * 15 14 12 38 38 H 1.09005 * 109.47088 * 59.99814 * 15 14 12 39 39 H 0.97000 * 119.99500 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.05394 * 180.02562 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3500 1.5456 -0.0005 5 8 4.0903 0.5819 -0.0015 6 6 3.9132 2.9071 0.0000 7 6 5.2997 3.0919 -0.0011 8 6 5.8233 4.3641 0.0051 9 6 4.9752 5.4684 0.0023 10 16 5.6504 7.0959 0.0047 11 6 7.4394 6.7953 0.0031 12 6 8.1701 8.1134 0.0043 13 8 7.5456 9.1530 0.0056 14 7 9.5177 8.1367 0.0028 15 6 10.2281 9.4179 0.0034 16 6 11.7143 9.1683 0.0022 17 1 12.0918 8.1564 0.0007 18 6 12.5920 10.2317 0.0019 19 7 12.1321 11.4638 0.0033 20 14 14.4341 9.9221 -0.0003 21 1 14.8050 9.1506 -1.2137 22 1 15.1542 11.2209 0.0004 23 1 14.8077 9.1490 1.2113 24 6 3.5920 5.2887 0.0029 25 9 2.7717 6.3622 0.0048 26 6 3.0620 4.0176 0.0019 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9587 2.2363 -0.0019 33 1 6.8939 4.5065 0.0088 34 1 7.7131 6.2269 0.8919 35 1 7.7120 6.2299 -0.8881 36 1 10.0172 7.3052 0.0014 37 1 9.9540 9.9857 -0.8857 38 1 9.9558 9.9839 0.8943 39 1 12.7496 12.2118 0.0027 40 1 1.9911 3.8781 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842660559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:45 Heat of formation + Delta-G solvation = -165.864046 kcal Electronic energy + Delta-G solvation = -25102.746946 eV Core-core repulsion = 20922.499997 eV Total energy + Delta-G solvation = -4180.246949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.04174 -41.68321 -40.55283 -39.71159 -37.67757 -36.22189 -34.43200 -33.38859 -32.31414 -31.80320 -31.35461 -28.79756 -26.34314 -24.77905 -24.17709 -23.60112 -22.21729 -21.68027 -19.81821 -19.09364 -18.64751 -18.33527 -17.64483 -17.62332 -17.37829 -17.11367 -16.94044 -16.89433 -16.65701 -16.10559 -15.56586 -15.19036 -15.17942 -14.73357 -14.67615 -14.44092 -14.33743 -13.99895 -13.75696 -13.58616 -13.43190 -13.39930 -12.94813 -12.92987 -12.69942 -12.67474 -12.50598 -12.23925 -11.74897 -11.54714 -11.51673 -11.34530 -11.11220 -11.03359 -10.80002 -10.11725 -9.92123 -8.67109 -8.28967 -6.45715 -0.76221 -0.01801 0.02495 1.12514 1.21441 1.44873 1.48116 1.52178 1.56432 1.57504 2.27975 2.37577 2.48680 2.92817 3.06538 3.40906 3.61889 3.74417 3.88037 3.95824 3.97864 4.03008 4.08232 4.15740 4.33398 4.37086 4.53691 4.75150 4.76009 4.87455 4.94340 5.05014 5.09331 5.13662 5.22705 5.38582 5.42933 5.47422 5.62950 5.82967 6.57148 6.63737 6.76051 7.21631 7.37566 8.82756 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.001792 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.729142 B =15617.899621 C =16709.576175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.519 3.481 5 O -0.527 6.527 6 C -0.123 4.123 7 C -0.032 4.032 8 C -0.117 4.117 9 C -0.103 4.103 10 S -0.045 6.045 11 C -0.138 4.138 12 C 0.512 3.488 13 O -0.587 6.587 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.557 4.557 17 H 0.088 0.912 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 C 0.083 3.917 25 F -0.136 7.136 26 C -0.065 4.065 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.414 0.586 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.268 0.732 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.630 -26.141 -0.011 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.273 6.273 4 C 0.365 3.635 5 O -0.419 6.419 6 C -0.127 4.127 7 C -0.052 4.052 8 C -0.141 4.141 9 C -0.218 4.218 10 S 0.202 5.798 11 C -0.289 4.289 12 C 0.298 3.702 13 O -0.469 6.469 14 N -0.346 5.346 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.106 0.894 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.186 1.186 24 C 0.057 3.943 25 F -0.114 7.114 26 C -0.085 4.085 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.077 0.923 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.298 -24.265 -0.007 31.636 hybrid contribution 1.447 -0.808 -0.005 1.658 sum -18.851 -25.073 -0.012 31.369 Atomic orbital electron populations 1.21845 0.90521 1.04451 1.03755 1.23356 0.96945 0.78555 1.02986 1.86560 1.22787 1.34248 1.83659 1.20938 0.81051 0.89352 0.72162 1.90853 1.60954 1.42904 1.47150 1.18929 0.94113 0.89423 1.10268 1.21408 0.93161 0.98167 0.92449 1.21326 1.00947 0.89876 1.01977 1.22748 0.95574 0.99927 1.03574 1.87057 1.01770 1.01212 1.89716 1.23922 0.94309 0.99208 1.11441 1.20267 0.83075 0.90335 0.76558 1.90721 1.67658 1.36345 1.52148 1.46039 1.05180 1.11233 1.72133 1.18607 0.91457 0.81224 0.94449 1.21593 0.90336 0.94522 1.53047 0.89443 1.26043 1.05208 0.94385 0.93868 1.70129 1.37431 0.99479 1.49836 0.85221 0.77123 0.77457 0.79503 1.18632 1.21375 1.18642 1.17034 0.85939 0.84090 1.07192 1.91536 1.71606 1.54228 1.94054 1.21370 1.02310 0.88731 0.96111 0.91274 0.91280 0.88138 0.90888 0.90883 0.81899 0.81111 0.82621 0.82630 0.74967 0.99147 0.99152 0.92287 0.81293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 71.98 0.74 -0.14 16 2 C 0.05 0.60 6.20 71.98 0.45 1.05 16 3 O -0.36 -5.48 9.46 -56.84 -0.54 -6.02 16 4 C 0.52 9.40 7.88 70.22 0.55 9.95 16 5 O -0.53 -11.77 16.13 19.75 0.32 -11.45 16 6 C -0.12 -2.03 5.88 -20.08 -0.12 -2.15 16 7 C -0.03 -0.46 9.58 22.51 0.22 -0.24 16 8 C -0.12 -1.71 9.34 22.35 0.21 -1.50 16 9 C -0.10 -2.11 6.13 22.81 0.14 -1.97 16 10 S -0.05 -1.20 20.66 -56.49 -1.17 -2.37 16 11 C -0.14 -3.05 4.81 71.24 0.34 -2.71 16 12 C 0.51 18.60 7.85 87.66 0.69 19.29 16 13 O -0.59 -27.85 15.86 -3.03 -0.05 -27.90 16 14 N -0.70 -26.55 5.55 -466.77 -2.59 -29.14 16 15 C 0.27 13.89 5.43 85.63 0.46 14.35 16 16 C -0.56 -28.94 9.28 25.60 0.24 -28.70 16 17 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 20 Si 0.98 40.99 29.54 68.60 2.03 43.01 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 C 0.08 1.74 7.26 22.45 0.16 1.90 16 25 F -0.14 -3.33 16.75 44.97 0.75 -2.58 16 26 C -0.06 -1.07 9.58 22.55 0.22 -0.86 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.16 1.89 7.64 -2.91 -0.02 1.87 16 33 H 0.17 1.53 5.86 -2.91 -0.02 1.51 16 34 H 0.16 2.31 7.73 -2.39 -0.02 2.29 16 35 H 0.16 2.31 7.75 -2.39 -0.02 2.29 16 36 H 0.41 12.18 8.32 -92.71 -0.77 11.41 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 39 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.17 2.20 7.60 -2.91 -0.02 2.18 16 Total: -1.00 -75.74 371.31 4.12 -71.62 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.32 Total: 10.51 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 4.76 Total: 9.00 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.30 Total: -83.82 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.27 Total: -45.37 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.75 Total: -2.58 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -1.17 Total: -2.37 kcal Total: -75.74 4.12 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842660559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.248 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds