Wall clock time and date at job start Wed Apr 1 2020 00:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34719 * 117.00071 * 2 1 4 4 O 1.21475 * 119.99711 * 0.02562 * 3 2 1 5 5 C 1.47679 * 120.00009 * 179.97438 * 3 2 1 6 6 C 1.39614 * 120.51573 * 0.02562 * 5 3 2 7 7 N 1.31665 * 120.71844 * 180.02562 * 6 5 3 8 8 C 1.31996 * 121.94313 * 0.02562 * 7 6 5 9 9 Cl 1.73595 * 119.51187 * 179.97438 * 8 7 6 10 10 C 1.39133 * 120.96843 * 359.97438 * 8 7 6 11 11 N 1.40057 * 120.41558 * 179.97438 * 10 8 7 12 12 C 1.34781 * 119.99928 * 204.57244 * 11 10 8 13 13 O 1.21585 * 119.99760 * 5.70006 * 12 11 10 14 14 N 1.34777 * 119.99988 * 185.69363 * 12 11 10 15 15 C 1.46500 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47250 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47362 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00142 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99948 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00077 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99745 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47297 * 90.00187 * 22 20 18 24 24 H 1.48500 * 109.47196 * 210.00130 * 22 20 18 25 25 H 1.48500 * 109.47617 * 330.00050 * 22 20 18 26 26 C 1.38881 * 119.16218 * 0.02562 * 10 8 7 27 27 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47469 * 299.99688 * 1 2 3 29 29 H 1.08996 * 109.47394 * 59.99855 * 1 2 3 30 30 H 1.07993 * 119.63929 * 359.74478 * 6 5 3 31 31 H 0.97003 * 120.00607 * 24.57908 * 11 10 8 32 32 H 0.97000 * 120.00036 * 0.02562 * 14 12 11 33 33 H 1.08999 * 109.47420 * 300.00660 * 15 14 12 34 34 H 1.08997 * 109.46867 * 60.00172 * 15 14 12 35 35 H 1.08996 * 109.47424 * 300.00020 * 16 15 14 36 36 H 1.08997 * 109.47273 * 60.00141 * 16 15 14 37 37 H 1.08999 * 109.47371 * 300.00421 * 17 16 15 38 38 H 1.09005 * 109.46613 * 60.00124 * 17 16 15 39 39 H 0.97006 * 119.99623 * 179.97438 * 21 20 18 40 40 H 1.08004 * 120.87732 * 180.02562 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5383 1.2776 0.0006 6 6 4.3092 0.1136 0.0006 7 7 5.6243 0.1778 0.0016 8 6 6.2672 1.3307 0.0031 9 17 8.0031 1.3417 0.0051 10 6 5.5739 2.5370 0.0032 11 7 6.2679 3.7536 0.0054 12 6 5.6789 4.8644 0.4910 13 8 4.5872 4.7914 1.0211 14 7 6.3002 6.0561 0.3889 15 6 5.6603 7.2634 0.9172 16 6 6.5688 8.4701 0.6741 17 6 5.9002 9.7312 1.2253 18 6 6.7954 10.9197 0.9864 19 1 7.7460 10.7889 0.4907 20 6 6.4009 12.1742 1.4008 21 7 5.2437 12.3334 2.0049 22 14 7.5109 13.6473 1.1053 23 1 7.1892 14.2532 -0.2117 24 1 7.2964 14.6517 2.1779 25 1 8.9294 13.2082 1.1149 26 6 4.1852 2.5195 0.0022 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.8216 -0.8499 0.0043 31 1 7.1723 3.7968 -0.3426 32 1 7.1711 6.1143 -0.0343 33 1 4.7067 7.4195 0.4129 34 1 5.4903 7.1458 1.9874 35 1 7.5226 8.3143 1.1782 36 1 6.7384 8.5875 -0.3961 37 1 4.9466 9.8869 0.7209 38 1 5.7303 9.6140 2.2956 39 1 4.9663 13.2160 2.2967 40 1 3.6193 3.4394 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861535779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:06 Heat of formation + Delta-G solvation = -87.390085 kcal Electronic energy + Delta-G solvation = -25796.249465 eV Core-core repulsion = 21637.281658 eV Total energy + Delta-G solvation = -4158.967807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57911 -40.59345 -39.65433 -37.23845 -36.82653 -36.11772 -35.17817 -33.51500 -32.84968 -31.57142 -30.28363 -28.21346 -26.79404 -25.12224 -24.52963 -23.06459 -21.68323 -21.21041 -20.56222 -18.99580 -18.67367 -17.74865 -17.61020 -16.86478 -16.78561 -16.47469 -16.26943 -15.79309 -15.13353 -14.98888 -14.48033 -14.30392 -14.23075 -14.16350 -13.71936 -13.64305 -13.36929 -12.56950 -12.34158 -12.22074 -12.04120 -11.91866 -11.89655 -11.46067 -11.21122 -11.20245 -10.94067 -10.82797 -10.65720 -10.56028 -10.22805 -9.96442 -9.93120 -9.51660 -9.17955 -9.11312 -8.64124 -8.41001 -6.05512 -4.08923 -0.15852 0.61808 1.20528 1.98971 2.06537 2.28815 2.85071 3.24056 3.28315 3.34986 3.37352 3.86201 3.87514 4.12319 4.30549 4.38964 4.41165 4.54802 4.73818 4.82949 5.06563 5.22485 5.30396 5.50938 5.54643 5.61972 5.68330 5.88823 6.04827 6.10440 6.26563 6.44587 6.50874 6.76384 6.91787 7.04943 7.30085 7.58587 7.67519 7.70279 7.92595 8.25971 8.33632 8.97591 9.55526 11.05684 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.002086 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.855584 B =13420.766138 C =15358.196344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.486 6.486 5 C -0.152 4.152 6 C 0.148 3.852 7 N -0.458 5.458 8 C 0.163 3.837 9 Cl -0.016 7.016 10 C 0.144 3.856 11 N -0.679 5.679 12 C 0.699 3.301 13 O -0.567 6.567 14 N -0.727 5.727 15 C 0.131 3.869 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.016 4.016 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.183 0.817 31 H 0.414 0.586 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -29.076 -6.481 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.357 3.643 4 O -0.373 6.373 5 C -0.156 4.156 6 C -0.012 4.012 7 N -0.168 5.168 8 C -0.004 4.004 9 Cl 0.013 6.987 10 C 0.042 3.958 11 N -0.327 5.327 12 C 0.400 3.600 13 O -0.444 6.444 14 N -0.380 5.380 15 C 0.009 3.991 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.044 4.044 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.251 0.749 32 H 0.233 0.767 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.121 -29.295 -5.896 29.958 hybrid contribution 1.000 1.719 -0.457 2.040 sum -1.121 -27.577 -6.353 28.321 Atomic orbital electron populations 1.23348 0.75256 1.04028 1.03041 1.86503 1.24096 1.32081 1.84421 1.20695 0.88268 0.81874 0.73463 1.90923 1.66301 1.35859 1.44206 1.20080 0.91164 0.95045 1.09292 1.23005 0.87124 0.98516 0.92544 1.67086 1.10406 1.26030 1.13271 1.21631 0.88071 0.88711 1.01991 1.98426 1.05754 1.98287 1.96254 1.17832 0.91325 0.84849 1.01747 1.42708 1.19006 1.05851 1.65101 1.15990 0.84428 0.80327 0.79303 1.90940 1.20159 1.84887 1.48366 1.45446 1.23285 1.06136 1.63178 1.21682 0.96944 0.81433 0.99049 1.21913 0.98307 0.94562 1.01128 1.19029 0.96041 0.89763 0.96523 1.21180 1.04236 0.92302 1.38461 0.92628 1.25034 0.95209 0.99094 0.95149 1.69963 1.20387 1.23172 1.39642 0.86575 0.80928 0.82483 0.77878 1.20645 1.21192 1.19902 1.22118 0.91937 0.99632 0.90700 0.87655 0.91487 0.91559 0.80020 0.74898 0.76747 0.91351 0.91399 0.92581 0.92578 0.96178 0.96184 0.92875 0.79748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -2.95 9.84 -40.54 -0.40 -3.34 16 3 C 0.51 5.65 7.90 34.59 0.27 5.92 16 4 O -0.49 -6.91 16.21 -19.25 -0.31 -7.23 16 5 C -0.15 -1.59 5.89 -104.86 -0.62 -2.20 16 6 C 0.15 1.29 10.78 -17.11 -0.18 1.10 16 7 N -0.46 -4.60 10.31 -9.86 -0.10 -4.70 16 8 C 0.16 1.65 7.29 -17.15 -0.13 1.53 16 9 Cl -0.02 -0.13 27.92 -51.86 -1.45 -1.58 16 10 C 0.14 1.59 6.45 -83.53 -0.54 1.05 16 11 N -0.68 -7.02 5.20 -14.13 -0.07 -7.09 16 12 C 0.70 9.54 8.38 -86.91 -0.73 8.81 16 13 O -0.57 -9.86 13.54 5.29 0.07 -9.79 16 14 N -0.73 -9.29 5.56 -65.23 -0.36 -9.65 16 15 C 0.13 2.14 5.67 -4.05 -0.02 2.12 16 16 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.02 -0.19 8.36 -38.67 -0.32 -0.52 16 27 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.18 1.04 7.61 -52.49 -0.40 0.64 16 31 H 0.41 3.08 7.77 -40.82 -0.32 2.77 16 32 H 0.40 3.85 8.49 -40.82 -0.35 3.50 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.19 2.71 5.56 -52.48 -0.29 2.41 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -33.80 367.58 -7.96 -41.76 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.70 Total: 1.55 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.89 Total: 4.07 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.20 Total: -47.17 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.64 Total: -20.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.45 Total: -1.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -7.96 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861535779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.631 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds