Wall clock time and date at job start Wed Apr 1 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99952 * 2 1 4 4 H 1.08997 * 110.43676 * 303.91568 * 3 2 1 5 5 C 1.54263 * 110.48428 * 66.45795 * 3 2 1 6 6 C 1.53876 * 106.59987 * 142.42237 * 5 3 2 7 7 C 1.54264 * 106.59910 * 359.97438 * 6 5 3 8 8 H 1.08998 * 110.48925 * 95.20405 * 7 6 5 9 9 N 1.46501 * 110.48781 * 217.71843 * 7 6 5 10 10 S 1.65608 * 119.99475 * 263.49222 * 9 7 6 11 11 O 1.42095 * 106.40436 * 311.60528 * 10 9 7 12 12 O 1.42099 * 106.39890 * 178.68886 * 10 9 7 13 13 C 1.76197 * 107.21902 * 65.14734 * 10 9 7 14 14 C 1.37630 * 120.12754 * 244.65147 * 13 10 9 15 15 C 1.38624 * 120.25000 * 179.72604 * 14 13 10 16 16 C 1.38660 * 120.49523 * 0.54762 * 15 14 13 17 17 C 1.37591 * 120.25035 * 359.72913 * 16 15 14 18 18 C 1.40708 * 120.12726 * 64.92165 * 13 10 9 19 19 C 1.41394 * 120.24026 * 359.97438 * 18 13 10 20 20 H 1.07995 * 120.00560 * 331.48850 * 19 18 13 21 21 C 1.39943 * 119.99594 * 151.49428 * 19 18 13 22 22 N 1.30822 * 120.00158 * 348.38945 * 21 19 18 23 23 Si 1.86807 * 120.00016 * 168.39067 * 21 19 18 24 24 H 1.48500 * 109.47112 * 89.99731 * 23 21 19 25 25 H 1.48497 * 109.46944 * 209.99831 * 23 21 19 26 26 H 1.48495 * 109.47006 * 330.00000 * 23 21 19 27 27 C 1.54892 * 110.59778 * 181.29765 * 3 2 1 28 28 H 1.09004 * 109.46502 * 299.99567 * 1 2 3 29 29 H 1.08997 * 109.47019 * 59.99590 * 1 2 3 30 30 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.03513 * 23.13521 * 5 3 2 32 32 H 1.09000 * 110.03263 * 261.70391 * 5 3 2 33 33 H 1.09009 * 110.03079 * 240.71368 * 6 5 3 34 34 H 1.08994 * 110.07781 * 119.30472 * 6 5 3 35 35 H 0.96996 * 120.00591 * 83.49131 * 9 7 6 36 36 H 1.08000 * 119.88003 * 359.97001 * 14 13 10 37 37 H 1.07992 * 119.75009 * 180.29820 * 15 14 13 38 38 H 1.08000 * 119.87009 * 179.75181 * 16 15 14 39 39 H 1.08002 * 120.12657 * 180.02562 * 17 16 15 40 40 H 0.97001 * 120.00217 * 180.02562 * 22 21 19 41 41 H 1.08998 * 110.75855 * 85.01014 * 27 3 2 42 42 H 1.09003 * 110.75670 * 321.63270 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7524 2.2666 -0.8476 5 6 1.7811 2.4234 1.3248 6 6 2.8642 3.4548 1.6866 7 6 3.9258 3.3893 0.5693 8 1 3.7329 4.1516 -0.1855 9 7 5.2699 3.5522 1.1290 10 16 5.9953 5.0409 1.1207 11 8 5.8460 5.5527 -0.1964 12 8 7.2577 4.8755 1.7517 13 6 5.0468 6.0892 2.1724 14 6 4.3861 7.1772 1.6493 15 6 3.6345 8.0004 2.4734 16 6 3.5485 7.7451 3.8336 17 6 4.2054 6.6662 4.3792 18 6 4.9667 5.8204 3.5512 19 6 5.6455 4.7084 4.1006 20 1 5.8292 3.8340 3.4939 21 6 6.0794 4.7408 5.4307 22 7 6.0647 5.8669 6.0963 23 14 6.6795 3.1759 6.2558 24 1 8.1422 3.0335 6.0425 25 1 6.3959 3.2440 7.7118 26 1 5.9775 2.0064 5.6689 27 6 3.7570 1.9724 -0.0328 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7071 1.6693 2.1083 32 1 0.8204 2.9213 1.1933 33 1 3.3158 3.2012 2.6457 34 1 2.4298 4.4535 1.7312 35 1 5.7349 2.7882 1.5044 36 1 4.4501 7.3884 0.5920 37 1 3.1154 8.8492 2.0536 38 1 2.9633 8.3953 4.4670 39 1 4.1367 6.4689 5.4388 40 1 6.3658 5.8895 7.0181 41 1 4.1292 1.9408 -1.0568 42 1 4.2594 1.2282 0.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866884855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:40 Heat of formation + Delta-G solvation = -72.320364 kcal Electronic energy + Delta-G solvation = -26253.306596 eV Core-core repulsion = 22643.329182 eV Total energy + Delta-G solvation = -3609.977414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -38.35652 -37.58852 -36.21571 -34.84850 -33.92960 -33.18505 -30.25678 -29.57578 -29.21803 -28.66328 -26.82238 -25.54667 -21.69578 -21.20788 -20.95588 -20.27333 -18.73036 -17.73277 -17.02437 -16.72070 -16.08616 -15.73429 -15.41656 -15.32702 -14.44805 -14.33752 -13.93410 -13.66501 -13.39975 -13.36364 -13.26714 -13.18220 -12.77297 -12.55064 -11.95104 -11.89876 -11.87123 -11.52956 -11.28221 -11.20254 -11.13672 -11.09924 -11.08430 -11.01858 -10.81556 -10.72152 -10.54147 -10.33230 -9.92338 -9.89530 -9.47639 -9.44075 -8.78881 -8.04579 -7.78996 -7.61945 -7.04526 -4.77926 1.46527 1.62336 2.32644 2.44817 2.72107 2.96125 2.99436 3.10892 3.76086 3.86952 4.39228 4.45737 4.63637 4.73657 4.89382 4.95219 4.97768 5.24844 5.35308 5.41425 5.46793 5.49369 5.51950 5.59689 5.68161 5.83829 5.92472 6.03518 6.07132 6.21906 6.25495 6.38451 6.50082 6.67463 6.78057 6.93406 7.06766 7.28728 7.47055 7.52974 7.66096 7.79300 7.87591 8.27038 8.48635 8.63351 9.88249 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.004553 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.353835 B = 6148.373459 C = 6885.703096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.262 6.262 3 C -0.057 4.057 4 H 0.093 0.907 5 C -0.117 4.117 6 C -0.142 4.142 7 C 0.159 3.841 8 H 0.097 0.903 9 N -1.114 6.114 10 S 2.698 3.302 11 O -0.999 6.999 12 O -0.964 6.964 13 C -0.772 4.772 14 C -0.003 4.003 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.158 4.158 18 C 0.190 3.810 19 C -0.445 4.445 20 H 0.087 0.913 21 C 0.081 3.919 22 N -0.776 5.776 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.255 1.255 27 C -0.102 4.102 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.287 0.713 41 H 0.080 0.920 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -8.370 -5.754 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.034 6.034 3 C -0.186 4.186 4 H 0.111 0.889 5 C -0.156 4.156 6 C -0.182 4.182 7 C 0.049 3.951 8 H 0.115 0.885 9 N -0.869 5.869 10 S 2.796 3.204 11 O -0.989 6.989 12 O -0.955 6.955 13 C -0.868 4.868 14 C -0.023 4.023 15 C -0.271 4.271 16 C -0.096 4.096 17 C -0.177 4.177 18 C 0.185 3.815 19 C -0.473 4.473 20 H 0.105 0.895 21 C -0.140 4.140 22 N -0.399 5.399 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.198 1.198 26 H -0.179 1.179 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.791 -8.824 -6.127 13.270 hybrid contribution -1.045 0.456 1.189 1.648 sum -8.836 -8.368 -4.938 13.133 Atomic orbital electron populations 1.23350 0.94592 1.06127 1.04945 1.86833 1.07051 1.11622 1.97902 1.24020 1.00216 0.92849 1.01564 0.88866 1.22511 0.99034 0.98749 0.95355 1.22714 0.95592 0.99497 1.00403 1.21434 0.81857 0.97106 0.94672 0.88545 1.55741 1.26758 1.27868 1.76523 1.01150 0.73723 0.72469 0.73102 1.93445 1.87409 1.79558 1.38533 1.93549 1.39520 1.85292 1.77123 1.29826 1.30339 1.17348 1.09258 1.20235 0.92173 0.92182 0.97688 1.20477 1.08984 1.03350 0.94262 1.20892 0.97616 0.96556 0.94496 1.21500 0.99119 0.96947 1.00177 1.16955 0.85840 0.90253 0.88405 1.19829 1.29577 1.01348 0.96577 0.89539 1.25936 0.93279 0.97802 0.96985 1.69776 1.32438 1.26462 1.11272 0.86207 0.80485 0.81387 0.78347 1.18673 1.19835 1.17882 1.22585 0.92160 0.97151 1.02375 0.90402 0.90671 0.88439 0.90412 0.91678 0.89324 0.90607 0.75448 0.87553 0.88854 0.88939 0.85815 0.90148 0.90087 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.62 101.05 1.07 0.11 16 2 S -0.26 -2.86 21.66 -107.50 -2.33 -5.19 16 3 C -0.06 -0.62 3.38 -25.07 -0.08 -0.71 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.12 -1.33 6.25 -25.61 -0.16 -1.49 16 6 C -0.14 -2.01 6.54 -25.61 -0.17 -2.17 16 7 C 0.16 2.28 3.52 -66.28 -0.23 2.05 16 8 H 0.10 1.41 7.57 -51.93 -0.39 1.01 16 9 N -1.11 -18.60 4.66 -3.49 -0.02 -18.62 16 10 S 2.70 57.46 4.95 -107.50 -0.53 56.93 16 11 O -1.00 -22.25 16.34 -57.18 -0.93 -23.18 16 12 O -0.96 -23.67 16.58 -57.18 -0.95 -24.62 16 13 C -0.77 -17.72 5.94 -38.87 -0.23 -17.95 16 14 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 15 C -0.25 -5.30 10.05 -39.28 -0.39 -5.70 16 16 C -0.08 -1.67 10.02 -39.66 -0.40 -2.06 16 17 C -0.16 -3.76 8.66 -38.88 -0.34 -4.10 16 18 C 0.19 4.63 5.55 -106.82 -0.59 4.04 16 19 C -0.45 -10.73 7.65 -37.74 -0.29 -11.02 16 20 H 0.09 1.94 5.73 -52.49 -0.30 1.64 16 21 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 22 N -0.78 -18.72 10.87 55.55 0.60 -18.12 16 23 Si 0.91 17.67 29.58 -169.99 -5.03 12.64 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 26 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 27 C -0.10 -1.22 5.97 -24.74 -0.15 -1.37 16 28 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.40 8.04 -51.92 -0.42 0.98 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.41 6.17 8.50 -34.48 -0.29 5.87 16 36 H 0.11 2.17 7.33 -52.49 -0.38 1.79 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 3.00 6.24 -52.49 -0.33 2.67 16 40 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -29.40 365.44 -11.98 -41.37 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.87 Total: 12.28 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: -2.43 Total: -39.01 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.59 Total: -36.73 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.88 Total: -47.80 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 54.60 SS G_CDS: -2.86 Total: 51.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.40 -11.98 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866884855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.946 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds