Wall clock time and date at job start Wed Apr 1 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81401 * 103.00003 * 2 1 4 4 H 1.09003 * 110.53721 * 52.38457 * 3 2 1 5 5 C 1.54886 * 110.48758 * 289.77893 * 3 2 1 6 6 C 1.55008 * 102.75633 * 203.36848 * 5 3 2 7 7 C 1.54269 * 104.13776 * 37.94519 * 6 5 3 8 8 H 1.08991 * 110.03482 * 217.06679 * 7 6 5 9 9 N 1.46507 * 110.02905 * 95.68676 * 7 6 5 10 10 S 1.65600 * 119.99799 * 96.39297 * 9 7 6 11 11 O 1.42098 * 106.40378 * 178.85573 * 10 9 7 12 12 O 1.42101 * 106.40702 * 311.78254 * 10 9 7 13 13 C 1.76201 * 107.21552 * 65.32048 * 10 9 7 14 14 C 1.37644 * 120.12840 * 245.10757 * 13 10 9 15 15 C 1.38615 * 120.24881 * 179.70295 * 14 13 10 16 16 C 1.38655 * 120.49889 * 0.59345 * 15 14 13 17 17 C 1.37602 * 120.25065 * 359.68721 * 16 15 14 18 18 C 1.40696 * 120.12886 * 65.38079 * 13 10 9 19 19 C 1.41392 * 120.24471 * 0.02900 * 18 13 10 20 20 H 1.08004 * 119.99850 * 330.23883 * 19 18 13 21 21 C 1.39945 * 120.00292 * 150.24876 * 19 18 13 22 22 N 1.30818 * 119.99765 * 348.23502 * 21 19 18 23 23 Si 1.86801 * 119.99904 * 168.23896 * 21 19 18 24 24 H 1.48497 * 109.47468 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46922 * 119.99613 * 23 21 19 26 26 H 1.48495 * 109.47156 * 239.99452 * 23 21 19 27 27 C 1.53874 * 106.64063 * 336.38157 * 7 6 5 28 28 H 1.08995 * 109.47072 * 60.00136 * 1 2 3 29 29 H 1.09008 * 109.46668 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47217 * 299.99412 * 1 2 3 31 31 H 1.09005 * 110.75376 * 321.69082 * 5 3 2 32 32 H 1.09004 * 110.75927 * 84.87471 * 5 3 2 33 33 H 1.08999 * 110.50410 * 279.29649 * 6 5 3 34 34 H 1.08997 * 110.52996 * 156.61259 * 6 5 3 35 35 H 0.96998 * 120.00316 * 276.39974 * 9 7 6 36 36 H 1.08003 * 119.87335 * 359.97438 * 14 13 10 37 37 H 1.07998 * 119.75103 * 180.30652 * 15 14 13 38 38 H 1.08004 * 119.87500 * 179.70611 * 16 15 14 39 39 H 1.07997 * 120.12428 * 180.02562 * 17 16 15 40 40 H 0.97003 * 119.99887 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.03349 * 119.30090 * 27 7 6 42 42 H 1.08995 * 110.03318 * 240.68751 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7010 2.2803 0.8086 5 6 1.8656 2.4062 -1.3653 6 6 2.7893 3.6501 -1.4128 7 6 4.1066 3.1660 -0.7723 8 1 4.5458 3.9637 -0.1734 9 7 5.0466 2.7457 -1.8145 10 16 6.2049 3.7972 -2.3576 11 8 6.9621 3.0920 -3.3316 12 8 5.5389 5.0229 -2.6288 13 6 7.2966 4.1117 -1.0108 14 6 7.3805 5.3745 -0.4698 15 6 8.2339 5.6233 0.5938 16 6 9.0209 4.6085 1.1168 17 6 8.9576 3.3397 0.5880 18 6 8.0901 3.0742 -0.4879 19 6 8.0171 1.7744 -1.0396 20 1 7.0963 1.4279 -1.4853 21 6 9.1377 0.9368 -1.0081 22 7 10.3083 1.4224 -0.6838 23 14 8.9620 -0.8746 -1.4293 24 1 7.5448 -1.1710 -1.7590 25 1 9.8203 -1.1966 -2.5977 26 1 9.3814 -1.6963 -0.2657 27 6 3.7462 1.9698 0.1260 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.0953 1.7230 -2.1830 32 1 0.8162 2.6997 -1.3923 33 1 2.3603 4.4666 -0.8320 34 1 2.9582 3.9616 -2.4436 35 1 4.9904 1.8517 -2.1864 36 1 6.7759 6.1736 -0.8727 37 1 8.2897 6.6160 1.0153 38 1 9.6858 4.8147 1.9425 39 1 9.5711 2.5508 0.9973 40 1 11.0852 0.8419 -0.6623 41 1 4.2706 1.0765 -0.2135 42 1 4.0105 2.1869 1.1608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866884857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:45 Heat of formation + Delta-G solvation = -71.464173 kcal Electronic energy + Delta-G solvation = -26140.961288 eV Core-core repulsion = 22531.021002 eV Total energy + Delta-G solvation = -3609.940287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.44381 -37.58871 -36.17602 -34.81374 -33.89393 -32.97955 -30.22510 -29.57661 -29.21085 -28.72691 -27.00077 -25.52705 -21.66691 -21.17356 -21.01910 -20.34464 -18.64677 -17.69119 -16.93165 -16.66709 -16.13531 -15.78563 -15.40520 -15.28358 -14.47282 -14.33813 -14.11219 -13.72377 -13.48669 -13.30120 -13.22386 -13.15288 -12.75630 -12.30686 -12.01461 -11.90232 -11.81475 -11.52232 -11.27323 -11.20033 -11.16287 -11.08328 -11.00071 -10.90441 -10.81234 -10.75926 -10.57277 -10.46758 -9.90325 -9.89049 -9.48650 -9.42474 -8.79460 -8.04069 -7.75966 -7.60394 -7.02769 -4.75729 1.52185 1.62276 2.33151 2.47696 2.72240 2.99343 3.05431 3.10924 3.79162 3.92587 4.39776 4.42748 4.57129 4.76999 4.89072 4.94751 4.97191 5.25363 5.32156 5.39953 5.45021 5.49358 5.51871 5.55066 5.71425 5.77652 5.85723 6.03310 6.06632 6.20357 6.22957 6.33208 6.39293 6.58111 6.79090 6.93919 7.07927 7.30414 7.47977 7.55371 7.67479 7.79783 7.89158 8.28393 8.51022 8.64291 9.91056 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.004840 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.523085 B = 5783.386161 C = 7047.936481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.258 6.258 3 C -0.058 4.058 4 H 0.091 0.909 5 C -0.117 4.117 6 C -0.137 4.137 7 C 0.163 3.837 8 H 0.092 0.908 9 N -1.114 6.114 10 S 2.698 3.302 11 O -0.965 6.965 12 O -0.997 6.997 13 C -0.776 4.776 14 C -0.004 4.004 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.157 4.157 18 C 0.188 3.812 19 C -0.445 4.445 20 H 0.088 0.912 21 C 0.081 3.919 22 N -0.777 5.777 23 Si 0.914 3.086 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.270 1.270 27 C -0.107 4.107 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.287 0.713 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.140 -2.042 3.126 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.029 6.029 3 C -0.187 4.187 4 H 0.110 0.890 5 C -0.156 4.156 6 C -0.177 4.177 7 C 0.054 3.946 8 H 0.110 0.890 9 N -0.870 5.870 10 S 2.795 3.205 11 O -0.955 6.955 12 O -0.987 6.987 13 C -0.871 4.871 14 C -0.024 4.024 15 C -0.271 4.271 16 C -0.096 4.096 17 C -0.176 4.176 18 C 0.184 3.816 19 C -0.474 4.474 20 H 0.106 0.894 21 C -0.140 4.140 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.177 1.177 25 H -0.193 1.193 26 H -0.195 1.195 27 C -0.147 4.147 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.197 -2.505 2.359 13.638 hybrid contribution -0.414 -0.169 0.543 0.703 sum -13.612 -2.674 2.902 14.172 Atomic orbital electron populations 1.23350 0.95068 1.06109 1.04698 1.87042 1.06491 1.11556 1.97857 1.24102 1.00648 0.92844 1.01123 0.89048 1.22892 0.99341 0.97669 0.95717 1.22934 0.95117 0.96945 1.02748 1.21127 0.89526 0.96064 0.87921 0.88988 1.55877 1.48115 1.29771 1.53215 1.01184 0.72625 0.72214 0.74430 1.93546 1.70041 1.73352 1.58567 1.93450 1.75369 1.45108 1.84791 1.29889 1.27929 1.01067 1.28232 1.20261 0.94913 0.93975 0.93258 1.20489 1.05202 0.98233 1.03129 1.20900 0.96792 0.94006 0.97874 1.21476 1.02318 0.96079 0.97762 1.16995 0.86808 0.90361 0.87472 1.19862 0.98707 0.97458 1.31353 0.89447 1.25933 0.94319 1.01572 0.92177 1.69784 0.99820 1.37772 1.32615 0.86142 0.80601 0.80514 0.79047 1.17663 1.19337 1.19470 1.22324 0.91744 0.99413 1.01232 0.90594 0.88465 0.90769 0.90023 0.91635 0.90671 0.89878 0.75452 0.87439 0.88769 0.88846 0.85959 0.90196 0.89229 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.72 101.05 1.08 0.10 16 2 S -0.26 -2.95 21.63 -107.50 -2.33 -5.28 16 3 C -0.06 -0.63 3.36 -25.07 -0.08 -0.71 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.12 -1.22 6.30 -24.68 -0.16 -1.38 16 6 C -0.14 -1.68 6.55 -25.01 -0.16 -1.84 16 7 C 0.16 2.33 3.43 -66.81 -0.23 2.10 16 8 H 0.09 1.37 7.92 -51.93 -0.41 0.96 16 9 N -1.11 -18.79 4.57 -3.94 -0.02 -18.81 16 10 S 2.70 57.74 4.89 -107.50 -0.53 57.21 16 11 O -0.96 -23.88 16.56 -57.17 -0.95 -24.82 16 12 O -1.00 -21.93 16.72 -57.17 -0.96 -22.88 16 13 C -0.78 -18.19 5.85 -38.87 -0.23 -18.42 16 14 C 0.00 -0.09 9.54 -39.66 -0.38 -0.47 16 15 C -0.25 -5.38 10.05 -39.29 -0.39 -5.78 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 17 C -0.16 -3.82 8.65 -38.87 -0.34 -4.16 16 18 C 0.19 4.71 5.53 -106.83 -0.59 4.12 16 19 C -0.45 -11.02 7.59 -37.74 -0.29 -11.31 16 20 H 0.09 2.02 5.82 -52.48 -0.31 1.71 16 21 C 0.08 1.95 5.23 -17.34 -0.09 1.86 16 22 N -0.78 -19.09 10.96 55.55 0.61 -18.48 16 23 Si 0.91 18.12 29.58 -169.99 -5.03 13.09 16 24 H -0.25 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 27 C -0.11 -1.37 6.16 -25.61 -0.16 -1.53 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 35 H 0.41 6.39 8.38 -34.47 -0.29 6.10 16 36 H 0.11 2.21 7.32 -52.48 -0.38 1.82 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.12 3.02 6.34 -52.49 -0.33 2.69 16 40 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 41 H 0.09 1.26 7.38 -51.93 -0.38 0.88 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -30.02 365.88 -11.97 -41.99 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.88 Total: 11.99 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: -2.41 Total: -39.51 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.59 Total: -37.29 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.90 Total: -47.71 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -2.85 Total: 51.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.02 -11.97 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866884857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.475 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds