Wall clock time and date at job start Wed Apr 1 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00280 * 2 1 4 4 O 1.20831 * 119.99540 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00286 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47146 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.46899 * 179.97438 * 6 5 3 8 8 C 1.36933 * 119.99967 * 293.72067 * 7 6 5 9 9 H 1.08000 * 119.99566 * 149.44077 * 8 7 6 10 10 C 1.38809 * 120.00537 * 329.44076 * 8 7 6 11 11 N 1.31623 * 119.99684 * 337.45693 * 10 8 7 12 12 Si 1.86803 * 120.00255 * 157.45773 * 10 8 7 13 13 H 1.48503 * 109.46893 * 89.99996 * 12 10 8 14 14 H 1.48500 * 109.46736 * 210.00084 * 12 10 8 15 15 H 1.48500 * 109.46611 * 329.99874 * 12 10 8 16 16 S 1.65603 * 119.99779 * 113.72698 * 7 6 5 17 17 O 1.42103 * 104.27359 * 333.92698 * 16 7 6 18 18 O 1.42096 * 104.27441 * 206.06969 * 16 7 6 19 19 C 1.81399 * 104.45185 * 89.99697 * 16 7 6 20 20 C 1.52992 * 109.47165 * 179.97438 * 19 16 7 21 21 C 1.53784 * 113.61456 * 185.00153 * 20 19 16 22 22 C 1.53785 * 87.17186 * 220.06229 * 21 20 19 23 23 F 1.39899 * 113.61337 * 139.94242 * 22 21 20 24 24 F 1.39898 * 113.61196 * 270.84121 * 22 21 20 25 25 C 1.53778 * 87.08450 * 25.38804 * 22 21 20 26 26 H 1.08997 * 109.47212 * 60.00257 * 1 2 3 27 27 H 1.09007 * 109.47244 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47080 * 299.99942 * 1 2 3 29 29 H 1.08994 * 109.47028 * 59.99585 * 5 3 2 30 30 H 1.08999 * 109.46594 * 299.99861 * 5 3 2 31 31 H 1.09005 * 109.46694 * 59.99540 * 6 5 3 32 32 H 1.08999 * 109.46951 * 300.00096 * 6 5 3 33 33 H 0.96996 * 119.99826 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.46815 * 59.99852 * 19 16 7 35 35 H 1.09006 * 109.47075 * 300.00312 * 19 16 7 36 36 H 1.08995 * 112.90830 * 316.25289 * 20 19 16 37 37 H 1.08999 * 113.61710 * 105.47270 * 21 20 19 38 38 H 1.09000 * 113.61321 * 334.65067 * 21 20 19 39 39 H 1.08998 * 113.61017 * 89.11238 * 25 22 21 40 40 H 1.08994 * 113.61542 * 219.93920 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1718 2.3784 1.0848 9 1 7.1621 1.9681 0.9531 10 6 5.6174 2.4595 2.3548 11 7 4.6544 3.3231 2.5986 12 14 6.2380 1.3431 3.7180 13 1 7.3553 2.0099 4.4337 14 1 5.1341 1.0663 4.6720 15 1 6.7177 0.0659 3.1317 16 16 6.2599 3.4377 -1.3142 17 8 5.3746 3.2075 -2.4017 18 8 7.5402 2.8231 -1.2690 19 6 6.3935 5.2132 -0.9670 20 6 7.1209 5.9052 -2.1214 21 6 7.3949 7.3975 -1.8705 22 6 7.0302 7.6343 -3.3456 23 9 6.2713 8.7905 -3.5565 24 9 8.1208 7.5325 -4.2158 25 6 6.1872 6.3509 -3.2616 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9557 0.7808 -0.8907 30 1 3.9564 0.7805 0.8892 31 1 3.6107 3.2363 0.8889 32 1 3.6101 3.2359 -0.8911 33 1 4.2673 3.3800 3.4861 34 1 6.9538 5.3617 -0.0439 35 1 5.3956 5.6383 -0.8588 36 1 7.9954 5.3523 -2.4641 37 1 8.4369 7.6170 -1.6377 38 1 6.6986 7.8574 -1.1693 39 1 5.1600 6.5235 -2.9406 40 1 6.2531 5.7262 -4.1523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867739937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:52 Heat of formation + Delta-G solvation = -233.261575 kcal Electronic energy + Delta-G solvation = -28738.801690 eV Core-core repulsion = 24124.862940 eV Total energy + Delta-G solvation = -4613.938750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.77432 -47.11219 -40.04332 -38.09632 -36.62786 -35.83228 -35.78821 -34.63697 -32.07711 -30.37159 -29.32291 -27.48826 -26.22797 -25.29856 -23.04026 -22.64879 -20.22139 -19.95933 -18.54224 -17.54008 -17.35177 -17.05738 -16.53310 -16.46531 -16.22976 -16.18973 -16.03531 -15.51571 -14.86839 -14.68106 -14.25208 -13.98335 -13.77062 -13.51375 -13.42888 -13.26585 -13.04998 -12.64198 -12.57809 -12.47334 -12.25423 -11.90792 -11.64090 -11.42055 -11.38455 -11.17635 -11.10299 -10.88700 -10.86746 -10.77178 -10.73745 -10.55506 -10.43757 -10.38187 -10.04710 -10.01360 -9.58740 -9.44665 -8.05282 -6.66135 -4.24712 1.45150 2.65590 2.99188 3.08921 3.10269 3.15823 3.50549 3.79915 3.82167 4.14174 4.30204 4.38647 4.44693 4.57975 5.02458 5.21850 5.24069 5.27628 5.29689 5.37951 5.44849 5.49384 5.53696 5.61439 5.67719 5.76930 5.78742 5.86836 6.03557 6.18282 6.27786 6.41741 6.48246 6.72721 7.03716 7.07101 7.40380 8.13994 8.18387 8.54610 9.00728 10.23675 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.003849 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.816093 B = 7273.312192 C = 8659.641379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.113 4.113 6 C 0.127 3.873 7 N -0.807 5.807 8 C -0.251 4.251 9 H 0.115 0.885 10 C 0.035 3.965 11 N -0.823 5.823 12 Si 0.918 3.082 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.261 1.261 16 S 2.482 3.518 17 O -0.998 6.998 18 O -0.980 6.980 19 C -0.645 4.645 20 C -0.090 4.090 21 C -0.153 4.153 22 C 0.249 3.751 23 F -0.194 7.194 24 F -0.182 7.182 25 C -0.165 4.165 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.277 0.723 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 0.849 -2.199 3.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.153 4.153 6 C 0.000 4.000 7 N -0.630 5.630 8 C -0.398 4.398 9 H 0.133 0.867 10 C -0.179 4.179 11 N -0.461 5.461 12 Si 0.743 3.257 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.185 1.185 16 S 2.583 3.417 17 O -0.988 6.988 18 O -0.970 6.970 19 C -0.764 4.764 20 C -0.110 4.110 21 C -0.191 4.191 22 C 0.213 3.787 23 F -0.175 7.175 24 F -0.163 7.163 25 C -0.203 4.203 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.303 0.957 -3.114 3.989 hybrid contribution -0.046 0.539 0.974 1.114 sum -2.349 1.496 -2.139 3.512 Atomic orbital electron populations 1.23169 0.77368 1.03051 1.02303 1.86540 1.22725 1.34373 1.84596 1.24113 0.92467 0.80870 0.71536 1.90629 1.67369 1.36245 1.45401 1.21654 0.85319 1.02393 1.05898 1.21204 0.80628 0.93174 1.05008 1.53674 1.12132 1.62779 1.34421 1.19871 1.03501 1.31916 0.84540 0.86749 1.25780 0.96848 0.96499 0.98733 1.69898 1.23724 1.29538 1.22904 0.86032 0.78885 0.80880 0.79886 1.19667 1.20362 1.18504 1.13027 0.74400 0.77286 0.76938 1.93367 1.64953 1.84927 1.55523 1.93377 1.42964 1.73467 1.87161 1.30991 1.07014 1.33559 1.04835 1.22007 0.98596 0.95565 0.94812 1.24147 1.04823 0.97057 0.93099 1.22209 0.82065 0.83890 0.90526 1.92990 1.75691 1.52741 1.96038 1.92999 1.55151 1.96174 1.71961 1.24334 1.00726 0.94030 1.01193 0.92175 0.88634 0.92168 0.88275 0.86975 0.86553 0.91192 0.91228 0.85687 0.86685 0.87731 0.88871 0.86721 0.86402 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.77 10.56 -39.24 -0.41 -6.18 16 3 C 0.47 8.53 7.96 36.01 0.29 8.82 16 4 O -0.51 -10.33 15.73 -18.75 -0.30 -10.63 16 5 C -0.11 -2.13 5.85 -27.88 -0.16 -2.29 16 6 C 0.13 2.66 4.35 -4.04 -0.02 2.65 16 7 N -0.81 -17.61 2.91 -59.91 -0.17 -17.79 16 8 C -0.25 -5.65 8.63 -15.06 -0.13 -5.78 16 9 H 0.12 2.62 7.26 -52.49 -0.38 2.24 16 10 C 0.04 0.76 4.63 -17.43 -0.08 0.68 16 11 N -0.82 -18.44 11.06 55.49 0.61 -17.83 16 12 Si 0.92 17.17 29.61 -169.99 -5.03 12.14 16 13 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 14 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 15 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 16 S 2.48 52.53 5.35 -107.50 -0.58 51.95 16 17 O -1.00 -22.56 16.65 -57.54 -0.96 -23.52 16 18 O -0.98 -23.33 16.82 -57.54 -0.97 -24.30 16 19 C -0.64 -11.22 6.01 37.15 0.22 -10.99 16 20 C -0.09 -1.40 3.64 -89.71 -0.33 -1.73 16 21 C -0.15 -2.01 7.42 -25.91 -0.19 -2.20 16 22 C 0.25 3.52 3.28 -25.92 -0.08 3.44 16 23 F -0.19 -2.83 17.41 2.25 0.04 -2.80 16 24 F -0.18 -2.70 17.38 2.25 0.04 -2.66 16 25 C -0.16 -2.40 7.43 -25.82 -0.19 -2.59 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.11 2.08 7.42 -51.93 -0.39 1.70 16 31 H 0.12 2.62 5.48 -51.93 -0.28 2.33 16 32 H 0.07 1.46 6.97 -51.93 -0.36 1.09 16 33 H 0.28 5.89 8.31 -40.82 -0.34 5.55 16 34 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 35 H 0.11 1.89 7.85 -51.92 -0.41 1.48 16 36 H 0.10 1.62 8.13 -51.93 -0.42 1.19 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.11 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.12 1.61 7.90 -51.93 -0.41 1.20 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -28.15 358.96 -7.09 -35.24 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.17 Total: 9.47 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 0.39 Total: -8.51 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.44 Total: -35.62 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.64 Total: -64.62 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.08 Total: -5.46 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.58 Total: 51.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.15 -7.09 -35.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.023 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds