Wall clock time and date at job start Wed Apr 1 2020 00:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47325 * 2 1 4 4 C 1.34224 * 117.00276 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00070 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00270 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46961 * 345.00891 * 6 4 3 8 8 F 1.39903 * 109.46882 * 105.00329 * 6 4 3 9 9 C 1.52992 * 109.47204 * 225.00378 * 6 4 3 10 10 C 1.53500 * 114.21144 * 300.00001 * 9 6 4 11 11 N 1.47069 * 87.98699 * 220.34639 * 10 9 6 12 12 C 1.34772 * 136.05400 * 206.85572 * 11 10 9 13 13 O 1.21757 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.46235 * 119.99617 * 179.97438 * 12 11 10 15 15 S 1.75663 * 125.23034 * 359.70669 * 14 12 11 16 16 C 1.75477 * 92.09324 * 179.91090 * 15 14 12 17 17 C 1.32762 * 111.36165 * 0.35262 * 16 15 14 18 18 C 1.39553 * 125.22418 * 179.97438 * 14 12 11 19 19 C 1.40533 * 123.71885 * 359.97329 * 18 14 12 20 20 H 1.07999 * 119.99921 * 336.49267 * 19 18 14 21 21 C 1.40308 * 120.00249 * 156.49734 * 19 18 14 22 22 N 1.30639 * 119.99710 * 350.14471 * 21 19 18 23 23 Si 1.86792 * 120.00185 * 170.14703 * 21 19 18 24 24 H 1.48505 * 109.47247 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47364 * 119.99924 * 23 21 19 26 26 H 1.48504 * 109.47313 * 240.00031 * 23 21 19 27 27 C 1.47062 * 87.88294 * 27.11960 * 11 10 9 28 28 H 1.09006 * 109.47452 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47302 * 300.00214 * 1 2 3 30 30 H 1.08996 * 109.47032 * 60.00371 * 1 2 3 31 31 H 1.09000 * 109.47638 * 239.99540 * 2 1 3 32 32 H 1.09004 * 109.47028 * 120.00279 * 2 1 3 33 33 H 1.09003 * 113.41825 * 73.20347 * 9 6 4 34 34 H 1.09000 * 113.46375 * 105.56167 * 10 9 6 35 35 H 1.09000 * 113.46225 * 335.13003 * 10 9 6 36 36 H 1.08003 * 124.31844 * 180.11619 * 16 15 14 37 37 H 1.07995 * 122.78361 * 179.72961 * 17 16 15 38 38 H 0.97000 * 119.99791 * 179.97438 * 22 21 19 39 39 H 1.09002 * 113.46892 * 87.65990 * 27 11 10 40 40 H 1.09002 * 113.46774 * 218.09355 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.1425 3.6524 -0.2666 8 9 4.4139 3.2385 1.2741 9 6 5.0586 3.0182 -1.0195 10 6 6.2189 2.0512 -0.7458 11 7 7.1407 3.1298 -1.1329 12 6 8.3836 3.2057 -1.6484 13 8 9.0015 2.1872 -1.9003 14 6 8.9898 4.5113 -1.9062 15 16 8.2223 6.0623 -1.6039 16 6 9.6262 6.9422 -2.1819 17 6 10.5869 6.1149 -2.5761 18 6 10.2648 4.7165 -2.4351 19 6 11.1387 3.6750 -2.7908 20 1 11.0310 2.7010 -2.3369 21 6 12.1512 3.9005 -3.7356 22 7 12.1658 5.0102 -4.4250 23 14 13.4781 2.6143 -4.0078 24 1 13.2377 1.4571 -3.1086 25 1 13.4439 2.1592 -5.4209 26 1 14.8079 3.2042 -3.7098 27 6 6.1120 4.0890 -0.7035 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 4.7142 3.0216 -2.0537 34 1 6.2411 1.1973 -1.4229 35 1 6.3047 1.7617 0.3015 36 1 9.6980 8.0192 -2.2165 37 1 11.5314 6.4607 -2.9693 38 1 12.8660 5.1663 -5.0779 39 1 6.1694 4.3423 0.3551 40 1 6.0434 4.9680 -1.3446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868560493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:29 Heat of formation + Delta-G solvation = -125.327984 kcal Electronic energy + Delta-G solvation = -26877.309638 eV Core-core repulsion = 22698.820465 eV Total energy + Delta-G solvation = -4178.489173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 19.69 seconds Orbital eigenvalues (eV) -49.18379 -41.71202 -40.95490 -38.93819 -37.84844 -37.49969 -34.92989 -33.06874 -32.25261 -30.86976 -29.25771 -27.63586 -26.84329 -24.65988 -23.81002 -22.88493 -21.66549 -20.88844 -20.43121 -19.33872 -18.83271 -18.29420 -17.99329 -17.77225 -17.40233 -17.18399 -16.74621 -16.46942 -15.66652 -15.45927 -15.20341 -15.11750 -14.90693 -14.53085 -14.22671 -13.98353 -13.79322 -13.70758 -13.62411 -13.46777 -13.29977 -13.08313 -12.97861 -12.94162 -12.74120 -12.53747 -12.45090 -12.14575 -12.03538 -11.91700 -11.57674 -11.44763 -11.28822 -10.95457 -10.44483 -9.70243 -9.33724 -8.93981 -8.88392 -6.47140 0.28487 0.80659 1.26105 1.29922 1.31630 1.39824 1.46819 1.77754 1.93986 2.03700 2.15895 2.46373 2.93565 3.21772 3.29528 3.45555 3.62526 3.81076 3.96311 4.00329 4.05820 4.22705 4.34315 4.40296 4.43262 4.48271 4.52005 4.66110 4.79233 4.94026 4.96244 5.04038 5.10788 5.19828 5.27075 5.35818 5.42308 5.58799 5.85702 6.35460 6.45432 6.56191 6.72959 6.98264 7.62020 8.05026 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.002700 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.933708 B =10368.410005 C =11493.313208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.347 6.347 4 C 0.445 3.555 5 O -0.511 6.511 6 C 0.132 3.868 7 H 0.176 0.824 8 F -0.186 7.186 9 C -0.130 4.130 10 C 0.120 3.880 11 N -0.669 5.669 12 C 0.616 3.384 13 O -0.609 6.609 14 C -0.464 4.464 15 S 0.032 5.968 16 C -0.199 4.199 17 C -0.131 4.131 18 C 0.112 3.888 19 C -0.418 4.418 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.791 5.791 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.257 1.257 26 H -0.245 1.245 27 C 0.117 3.883 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.177 0.823 37 H 0.140 0.860 38 H 0.302 0.698 39 H 0.098 0.902 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.026 -0.140 5.500 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.263 6.263 4 C 0.286 3.714 5 O -0.398 6.398 6 C 0.095 3.905 7 H 0.193 0.807 8 F -0.166 7.166 9 C -0.149 4.149 10 C -0.003 4.003 11 N -0.405 5.405 12 C 0.416 3.584 13 O -0.495 6.495 14 C -0.583 4.583 15 S 0.288 5.712 16 C -0.332 4.332 17 C -0.163 4.163 18 C 0.100 3.900 19 C -0.449 4.449 20 H 0.096 0.904 21 C -0.184 4.184 22 N -0.415 5.415 23 Si 0.808 3.192 24 H -0.198 1.198 25 H -0.181 1.181 26 H -0.168 1.168 27 C -0.006 4.006 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.195 0.805 37 H 0.158 0.842 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.550 -0.374 5.688 21.326 hybrid contribution 2.357 -1.358 -0.605 2.786 sum -18.193 -1.732 5.083 18.969 Atomic orbital electron populations 1.21832 0.90023 1.04439 1.04022 1.23389 0.97331 0.78773 1.02780 1.86507 1.22713 1.34182 1.82891 1.24258 0.81583 0.92858 0.72725 1.90741 1.61093 1.43921 1.44093 1.21092 0.97107 0.92477 0.79839 0.80690 1.92907 1.89382 1.93356 1.41005 1.23598 0.92123 0.97593 1.01617 1.22781 0.85119 0.92156 1.00206 1.49375 1.14612 1.11799 1.64738 1.16672 0.77976 0.87845 0.75873 1.90623 1.62412 1.38412 1.58077 1.22914 1.01587 0.93948 1.39828 1.82202 1.19678 0.96653 1.72682 1.25640 0.97863 1.03311 1.06424 1.21562 1.00992 0.92111 1.01661 1.18407 0.89977 0.93252 0.88318 1.20010 1.08843 0.98394 1.17669 0.90369 1.27032 0.99450 0.98650 0.93318 1.69647 1.31137 1.24676 1.16046 0.85061 0.77067 0.77782 0.79272 1.19844 1.18128 1.16815 1.23012 0.82160 0.93678 1.01797 0.88350 0.91010 0.90882 0.91086 0.91319 0.83443 0.92275 0.90517 0.80541 0.84232 0.88698 0.88369 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 71.98 0.74 -0.42 16 2 C 0.05 0.71 6.19 71.98 0.45 1.16 16 3 O -0.35 -5.94 10.22 -51.36 -0.52 -6.47 16 4 C 0.44 9.38 7.30 71.24 0.52 9.90 16 5 O -0.51 -14.52 14.65 21.97 0.32 -14.20 16 6 C 0.13 2.31 4.04 29.85 0.12 2.43 16 7 H 0.18 1.38 8.14 -2.39 -0.02 1.36 16 8 F -0.19 -4.03 15.46 44.97 0.70 -3.34 16 9 C -0.13 -3.07 4.12 -10.46 -0.04 -3.11 16 10 C 0.12 4.19 6.30 83.17 0.52 4.71 16 11 N -0.67 -28.16 3.69 -863.57 -3.19 -31.35 16 12 C 0.62 33.37 8.01 86.32 0.69 34.06 16 13 O -0.61 -37.94 15.23 -4.53 -0.07 -38.01 16 14 C -0.46 -24.76 6.50 24.67 0.16 -24.60 16 15 S 0.03 1.30 19.96 -56.49 -1.13 0.18 16 16 C -0.20 -8.31 11.07 66.64 0.74 -7.57 16 17 C -0.13 -6.49 9.05 22.61 0.20 -6.29 16 18 C 0.11 6.32 5.68 -20.89 -0.12 6.20 16 19 C -0.42 -24.44 8.51 23.33 0.20 -24.24 16 20 H 0.08 4.97 6.04 -2.91 -0.02 4.95 16 21 C 0.04 1.82 5.39 85.37 0.46 2.28 16 22 N -0.79 -39.09 10.81 21.89 0.24 -38.85 16 23 Si 0.99 39.73 29.57 68.60 2.03 41.76 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.24 -8.79 7.11 99.48 0.71 -8.09 16 27 C 0.12 3.46 6.68 83.17 0.56 4.02 16 28 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.71 7.70 -2.39 -0.02 2.69 16 36 H 0.18 5.84 8.06 -2.91 -0.02 5.81 16 37 H 0.14 6.91 6.40 -2.91 -0.02 6.89 16 38 H 0.30 13.01 8.29 -92.71 -0.77 12.24 16 39 H 0.10 2.73 7.07 -2.39 -0.02 2.71 16 40 H 0.09 2.68 6.33 -2.39 -0.02 2.67 16 Total: -1.00 -76.67 355.05 4.66 -72.01 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 1.09 Total: 19.74 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.20 Total: -1.47 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -2.95 Total: -70.20 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.27 Total: -58.67 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.70 Total: -3.34 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.13 Total: 0.18 kcal Total: -76.67 4.66 -72.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868560493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.320 kcal (2) G-P(sol) polarization free energy of solvation -76.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.69 seconds