Wall clock time and date at job start Wed Apr 1 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99799 * 2 1 4 4 O 1.20820 * 120.00006 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99822 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47212 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47139 * 179.97438 * 6 5 3 8 8 C 1.37093 * 120.00029 * 264.53618 * 7 6 5 9 9 H 1.07994 * 119.99847 * 146.01254 * 8 7 6 10 10 C 1.38950 * 119.99836 * 326.01628 * 8 7 6 11 11 N 1.31410 * 120.00410 * 337.80233 * 10 8 7 12 12 Si 1.86806 * 119.99784 * 157.80738 * 10 8 7 13 13 H 1.48494 * 109.47084 * 89.99920 * 12 10 8 14 14 H 1.48505 * 109.46704 * 209.99549 * 12 10 8 15 15 H 1.48496 * 109.47041 * 329.99745 * 12 10 8 16 16 C 1.34771 * 119.99751 * 84.53841 * 7 6 5 17 17 O 1.21297 * 120.00446 * 359.97438 * 16 7 6 18 18 C 1.50702 * 119.99870 * 179.97438 * 16 7 6 19 19 S 1.81398 * 109.47404 * 179.97438 * 18 16 7 20 20 C 1.76197 * 103.00205 * 180.02562 * 19 18 16 21 21 C 1.38943 * 120.05300 * 0.27412 * 20 19 18 22 22 C 1.38096 * 119.94077 * 180.21340 * 21 20 19 23 23 C 1.38476 * 120.06049 * 359.51128 * 22 21 20 24 24 F 1.35098 * 119.95010 * 180.27824 * 23 22 21 25 25 C 1.38483 * 120.10679 * 0.25568 * 23 22 21 26 26 C 1.38102 * 120.05537 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.47104 * 59.99773 * 1 2 3 28 28 H 1.09002 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47459 * 299.99890 * 1 2 3 30 30 H 1.08998 * 109.46970 * 59.99576 * 5 3 2 31 31 H 1.09004 * 109.46842 * 299.99982 * 5 3 2 32 32 H 1.09000 * 109.47446 * 59.99316 * 6 5 3 33 33 H 1.09004 * 109.46913 * 299.99585 * 6 5 3 34 34 H 0.96994 * 120.00549 * 180.02562 * 11 10 8 35 35 H 1.09009 * 109.46848 * 59.99987 * 18 16 7 36 36 H 1.08999 * 109.47554 * 300.00103 * 18 16 7 37 37 H 1.07996 * 120.02907 * 359.97438 * 21 20 19 38 38 H 1.08007 * 119.97198 * 179.79294 * 22 21 20 39 39 H 1.08002 * 119.97125 * 179.97438 * 25 23 22 40 40 H 1.07993 * 120.02702 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8187 0.0002 8 6 6.1418 2.9668 1.1822 9 1 7.1089 2.5039 1.3112 10 6 5.5852 3.7126 2.2141 11 7 4.6659 4.6142 1.9515 12 14 6.1438 3.4335 3.9747 13 1 7.2888 4.3289 4.2785 14 1 5.0231 3.7310 4.9025 15 1 6.5634 2.0190 4.1425 16 6 6.1419 2.7436 -1.1617 17 8 5.5415 2.6121 -2.2074 18 6 7.6468 2.8231 -1.1617 19 16 8.2592 2.6921 -2.8642 20 6 10.0066 2.8025 -2.6664 21 6 10.5556 2.9469 -1.3982 22 6 11.9252 3.0377 -1.2464 23 6 12.7518 2.9747 -2.3556 24 9 14.0916 3.0581 -2.2038 25 6 12.2073 2.8260 -3.6201 26 6 10.8380 2.7396 -3.7778 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2356 0.8906 33 1 3.6101 3.2367 -0.8894 34 1 4.2776 5.1350 2.6718 35 1 8.0537 2.0061 -0.5657 36 1 7.9604 3.7756 -0.7347 37 1 9.9116 2.9920 -0.5325 38 1 12.3523 3.1533 -0.2611 39 1 12.8540 2.7776 -4.4838 40 1 10.4139 2.6232 -4.7641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:48 Heat of formation + Delta-G solvation = -134.542778 kcal Electronic energy + Delta-G solvation = -26251.751574 eV Core-core repulsion = 22072.862818 eV Total energy + Delta-G solvation = -4178.888756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.90319 -40.11494 -38.76912 -38.74447 -36.24439 -35.13753 -32.16588 -31.56699 -31.07379 -30.52299 -28.92528 -27.40520 -25.22850 -23.56764 -22.86884 -22.73135 -20.40630 -19.41007 -18.16265 -17.56559 -17.22424 -16.63954 -16.36620 -16.23594 -16.16811 -16.05186 -15.61492 -14.96996 -14.67904 -14.52227 -14.21437 -14.03030 -13.65090 -13.57017 -13.33031 -13.21490 -12.83014 -12.67389 -12.41742 -12.26894 -11.88653 -11.78487 -11.64483 -11.40045 -11.14655 -11.12088 -10.92817 -10.58911 -10.56802 -10.22088 -10.08967 -9.85659 -9.48296 -9.35874 -9.21613 -8.79787 -7.84001 -7.11543 -6.59794 -4.30673 1.00106 1.15466 1.67468 2.61062 2.70589 2.96735 2.99344 3.10356 3.12266 3.46576 3.58281 3.93107 4.23009 4.51094 4.65195 4.75366 4.78358 5.15201 5.19935 5.23118 5.27307 5.29104 5.54482 5.59777 5.64133 5.68625 5.75509 5.79937 5.88392 6.01079 6.06079 6.12317 6.18253 6.19482 6.66466 6.74019 6.76531 7.14056 7.27248 7.60830 8.08559 8.12929 8.81718 9.17584 9.61598 10.41191 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012494 B = 0.002881 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.497440 B = 9717.795373 C =11410.548993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.129 3.871 7 N -0.427 5.427 8 C -0.358 4.358 9 H 0.094 0.906 10 C 0.049 3.951 11 N -0.844 5.844 12 Si 0.912 3.088 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.483 3.517 17 O -0.586 6.586 18 C -0.118 4.118 19 S -0.042 6.042 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.130 4.130 23 C 0.077 3.923 24 F -0.144 7.144 25 C -0.135 4.135 26 C -0.078 4.078 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.275 0.725 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -6.097 -3.155 9.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.165 4.165 6 C 0.005 3.995 7 N -0.145 5.145 8 C -0.485 4.485 9 H 0.111 0.889 10 C -0.160 4.160 11 N -0.479 5.479 12 Si 0.737 3.263 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.191 1.191 16 C 0.270 3.730 17 O -0.471 6.471 18 C -0.268 4.268 19 S 0.205 5.795 20 C -0.216 4.216 21 C -0.134 4.134 22 C -0.151 4.151 23 C 0.055 3.945 24 F -0.123 7.123 25 C -0.155 4.155 26 C -0.102 4.102 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.662 -5.830 -4.502 8.717 hybrid contribution 1.096 0.178 2.372 2.619 sum 5.758 -5.652 -2.130 8.345 Atomic orbital electron populations 1.23175 0.77280 1.03077 1.02364 1.86537 1.22806 1.34339 1.84632 1.24010 0.92323 0.80931 0.71784 1.90656 1.67253 1.36215 1.45018 1.21886 0.86076 1.03166 1.05348 1.21239 0.81386 0.91131 1.05787 1.43308 1.04660 1.61687 1.04809 1.19415 1.05576 1.33064 0.90470 0.88875 1.25377 0.96650 0.93290 1.00634 1.69921 1.26710 1.17531 1.33738 0.86180 0.78700 0.79312 0.82066 1.20001 1.20471 1.19067 1.19424 0.87161 0.82137 0.84305 1.90602 1.69599 1.55676 1.31271 1.23693 0.99612 1.07250 0.96282 1.86074 0.92664 1.89450 1.11358 1.22360 1.00042 1.03051 0.96137 1.21209 0.94822 1.00760 0.96614 1.21051 0.93492 1.02272 0.98282 1.17647 0.77024 1.05254 0.94584 1.91476 1.30283 1.93985 1.96574 1.21019 0.95620 1.02898 0.96008 1.20583 0.91668 0.99934 0.98059 0.92139 0.88579 0.92146 0.88198 0.87758 0.86224 0.91521 0.91471 0.87710 0.86864 0.84418 0.84623 0.84596 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.81 10.57 -39.25 -0.41 -6.23 16 3 C 0.47 8.70 7.96 36.01 0.29 8.99 16 4 O -0.50 -10.71 15.73 -18.75 -0.29 -11.01 16 5 C -0.13 -2.40 6.10 -27.89 -0.17 -2.57 16 6 C 0.13 2.93 4.19 -4.04 -0.02 2.91 16 7 N -0.43 -9.77 2.56 -114.81 -0.29 -10.06 16 8 C -0.36 -8.08 8.70 -14.94 -0.13 -8.21 16 9 H 0.09 1.94 6.97 -52.49 -0.37 1.57 16 10 C 0.05 1.13 4.92 -17.47 -0.09 1.04 16 11 N -0.84 -21.02 11.34 55.50 0.63 -20.39 16 12 Si 0.91 17.80 29.61 -169.99 -5.03 12.77 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 15 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 16 C 0.48 10.72 7.62 -10.99 -0.08 10.63 16 17 O -0.59 -14.34 15.54 5.54 0.09 -14.25 16 18 C -0.12 -2.11 3.47 36.01 0.13 -1.99 16 19 S -0.04 -0.69 21.06 -107.50 -2.26 -2.96 16 20 C -0.10 -1.44 6.11 -39.06 -0.24 -1.68 16 21 C -0.11 -1.45 9.36 -39.37 -0.37 -1.82 16 22 C -0.13 -1.58 10.02 -39.55 -0.40 -1.97 16 23 C 0.08 0.94 7.30 -39.40 -0.29 0.66 16 24 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 25 C -0.13 -1.51 10.02 -39.54 -0.40 -1.91 16 26 C -0.08 -0.95 9.79 -39.37 -0.39 -1.34 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.12 2.96 5.31 -51.93 -0.28 2.69 16 33 H 0.07 1.64 7.55 -51.93 -0.39 1.25 16 34 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 35 H 0.10 1.69 7.24 -51.92 -0.38 1.31 16 36 H 0.11 2.00 7.71 -51.92 -0.40 1.60 16 37 H 0.14 1.75 5.88 -52.49 -0.31 1.44 16 38 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -28.53 364.91 -7.76 -36.29 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.63 Total: 7.85 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.08 Total: 4.24 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: 0.34 Total: -30.45 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.62 Total: -31.49 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.26 Total: -2.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.53 -7.76 -36.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.249 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds