Wall clock time and date at job start Wed Apr 1 2020 00:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99878 * 2 1 4 4 O 1.20826 * 119.99737 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00189 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47393 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47240 * 180.02562 * 6 5 3 8 8 C 1.36694 * 119.99808 * 264.13823 * 7 6 5 9 9 H 1.08005 * 119.99873 * 136.04644 * 8 7 6 10 10 C 1.39173 * 120.00377 * 316.04873 * 8 7 6 11 11 N 1.31281 * 119.99902 * 347.26038 * 10 8 7 12 12 Si 1.86798 * 120.00382 * 167.25478 * 10 8 7 13 13 H 1.48497 * 109.47074 * 60.00002 * 12 10 8 14 14 H 1.48502 * 109.47283 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47310 * 300.00079 * 12 10 8 16 16 C 1.34776 * 120.00202 * 84.14125 * 7 6 5 17 17 O 1.21594 * 120.00327 * 5.65703 * 16 7 6 18 18 C 1.47742 * 119.99722 * 185.66005 * 16 7 6 19 19 C 1.39644 * 119.97594 * 312.64561 * 18 16 7 20 20 C 1.37962 * 120.02135 * 180.02562 * 19 18 16 21 21 F 1.35103 * 120.01442 * 180.02562 * 20 19 18 22 22 C 1.40182 * 119.97234 * 0.02562 * 20 19 18 23 23 C 1.47136 * 120.02612 * 179.97438 * 22 20 19 24 24 O 1.21262 * 119.99733 * 0.02562 * 23 22 20 25 25 C 1.39848 * 119.95331 * 359.97438 * 22 20 19 26 26 C 1.37955 * 119.97445 * 359.72483 * 25 22 20 27 27 F 1.35096 * 119.98927 * 180.27432 * 26 25 22 28 28 H 1.09005 * 109.47010 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47220 * 299.99716 * 1 2 3 30 30 H 1.08993 * 109.47219 * 59.99866 * 1 2 3 31 31 H 1.09000 * 109.46895 * 59.99716 * 5 3 2 32 32 H 1.09002 * 109.47480 * 300.00195 * 5 3 2 33 33 H 1.08998 * 109.47103 * 300.00095 * 6 5 3 34 34 H 1.08998 * 109.46671 * 60.00019 * 6 5 3 35 35 H 0.96998 * 120.00017 * 180.02562 * 11 10 8 36 36 H 1.07993 * 119.99108 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.99846 * 179.97438 * 23 22 20 38 38 H 1.07991 * 120.01557 * 179.97438 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1392 2.9761 1.1773 9 1 7.0243 2.3893 1.3742 10 6 5.6871 3.8921 2.1225 11 7 4.7740 4.7767 1.7950 12 14 6.3794 3.8629 3.8572 13 1 7.8458 4.0916 3.8089 14 1 5.7376 4.9316 4.6644 15 1 6.1046 2.5421 4.4778 16 6 6.1422 2.7346 -1.1613 17 8 5.5398 2.6985 -2.2169 18 6 7.6188 2.6860 -1.1514 19 6 8.3416 3.5948 -0.3755 20 6 9.7205 3.5506 -0.3660 21 9 10.4196 4.4295 0.3850 22 6 10.3958 2.5934 -1.1359 23 6 11.8664 2.5455 -1.1270 24 8 12.4946 3.3341 -0.4532 25 6 9.6709 1.6839 -1.9124 26 6 8.2920 1.7259 -1.9156 27 9 7.5912 0.8439 -2.6613 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9563 0.7807 -0.8891 32 1 3.9557 0.7811 0.8908 33 1 3.6107 3.2357 -0.8906 34 1 3.6099 3.2368 0.8893 35 1 4.4592 5.4154 2.4537 36 1 7.8211 4.3329 0.2165 37 1 12.3862 1.8076 -1.7200 38 1 10.1901 0.9463 -2.5062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:31 Heat of formation + Delta-G solvation = -225.068238 kcal Electronic energy + Delta-G solvation = -29746.123399 eV Core-core repulsion = 24997.095988 eV Total energy + Delta-G solvation = -4749.027411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.095 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.01242 -49.94276 -41.63414 -41.04624 -40.20066 -38.69830 -37.67513 -36.97361 -34.02357 -33.43351 -32.02900 -31.13939 -28.78660 -27.27217 -26.83674 -24.94490 -24.11422 -22.57129 -21.85627 -21.32227 -19.83980 -18.91344 -18.64894 -18.31416 -17.91687 -17.72290 -17.65141 -17.42450 -16.94482 -16.69335 -16.42675 -16.34063 -16.13257 -15.73219 -15.50074 -15.19466 -15.10556 -15.03354 -14.90147 -14.31913 -14.28821 -13.88566 -13.74756 -13.55792 -13.21517 -13.01567 -12.87349 -12.85735 -12.76927 -12.62991 -12.19567 -12.03344 -11.81962 -11.64257 -11.19143 -10.92588 -10.65634 -10.27448 -9.74259 -9.58310 -8.40503 -6.26619 -0.84283 -0.06598 1.10106 1.13338 1.42430 1.44477 1.52190 1.59679 1.89862 2.23764 2.41774 2.65509 2.90689 2.95925 3.06790 3.27639 3.54400 3.75730 3.84474 3.98970 4.09070 4.23273 4.30443 4.31101 4.37292 4.49089 4.53744 4.62916 4.68253 4.84574 4.89044 4.91077 5.04934 5.21587 5.31669 5.39570 5.59531 5.83456 6.25268 6.42816 6.66875 6.95619 7.29793 7.75984 8.62008 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.004039 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.179099 B = 6931.258599 C = 8658.078108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.475 3.525 4 O -0.537 6.537 5 C -0.116 4.116 6 C 0.138 3.862 7 N -0.427 5.427 8 C -0.359 4.359 9 H 0.101 0.899 10 C 0.015 3.985 11 N -0.885 5.885 12 Si 0.971 3.029 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.258 1.258 16 C 0.498 3.502 17 O -0.612 6.612 18 C -0.086 4.086 19 C -0.093 4.093 20 C 0.116 3.884 21 F -0.129 7.129 22 C -0.189 4.189 23 C 0.398 3.602 24 O -0.491 6.491 25 C -0.050 4.050 26 C 0.098 3.902 27 F -0.130 7.130 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.276 0.724 36 H 0.142 0.858 37 H 0.189 0.811 38 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -11.428 -3.069 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.155 4.155 6 C 0.014 3.986 7 N -0.143 5.143 8 C -0.487 4.487 9 H 0.118 0.882 10 C -0.190 4.190 11 N -0.520 5.520 12 Si 0.794 3.206 13 H -0.188 1.188 14 H -0.210 1.210 15 H -0.183 1.183 16 C 0.287 3.713 17 O -0.499 6.499 18 C -0.090 4.090 19 C -0.112 4.112 20 C 0.096 3.904 21 F -0.108 7.108 22 C -0.192 4.192 23 C 0.257 3.743 24 O -0.365 6.365 25 C -0.068 4.068 26 C 0.077 3.923 27 F -0.108 7.108 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.204 0.796 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.095 -10.559 -3.093 12.578 hybrid contribution -0.948 0.834 0.979 1.598 sum 5.147 -9.725 -2.114 11.205 Atomic orbital electron populations 1.23591 0.74690 1.05917 1.02472 1.86505 1.25201 1.32245 1.83819 1.23738 0.91979 0.81331 0.71099 1.90652 1.67817 1.37473 1.46682 1.21670 0.87149 1.00358 1.06325 1.20934 0.81654 0.93143 1.02836 1.43334 1.04779 1.60850 1.05378 1.19605 1.12914 1.22269 0.93883 0.88159 1.26250 0.96320 0.93005 1.03457 1.69924 1.29470 1.16180 1.36453 0.85306 0.78977 0.78662 0.77636 1.18830 1.20989 1.18253 1.18665 0.87321 0.81188 0.84118 1.90665 1.70412 1.56982 1.31854 1.20001 0.94060 0.96993 0.97985 1.21209 0.91929 1.00065 0.98025 1.18044 0.88880 0.90235 0.93224 1.91544 1.78715 1.66732 1.73787 1.21378 0.99447 0.97638 1.00691 1.24889 0.85345 0.84676 0.79351 1.90609 1.69566 1.39417 1.36876 1.21466 0.89349 0.98634 0.97397 1.17753 0.90662 0.89869 0.93987 1.91532 1.79521 1.65889 1.73873 0.84353 0.92042 0.92158 0.87863 0.85988 0.94357 0.88817 0.91456 0.83997 0.79571 0.76786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.96 10.57 -51.46 -0.54 -11.51 16 3 C 0.47 17.73 7.96 71.23 0.57 18.30 16 4 O -0.54 -23.31 15.73 21.96 0.35 -22.97 16 5 C -0.12 -4.50 6.09 29.85 0.18 -4.31 16 6 C 0.14 6.60 4.17 86.38 0.36 6.96 16 7 N -0.43 -20.56 2.48 -638.98 -1.59 -22.15 16 8 C -0.36 -16.79 6.52 84.16 0.55 -16.24 16 9 H 0.10 4.44 6.91 -2.91 -0.02 4.42 16 10 C 0.02 0.72 5.06 85.00 0.43 1.15 16 11 N -0.89 -45.90 11.49 21.70 0.25 -45.65 16 12 Si 0.97 37.85 29.57 68.60 2.03 39.88 16 13 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 14 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 15 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 16 C 0.50 23.71 6.96 86.76 0.60 24.32 16 17 O -0.61 -32.24 16.22 -4.01 -0.07 -32.31 16 18 C -0.09 -3.38 5.15 -20.01 -0.10 -3.48 16 19 C -0.09 -3.50 7.94 22.54 0.18 -3.32 16 20 C 0.12 3.76 7.28 22.68 0.17 3.92 16 21 F -0.13 -4.64 15.52 44.97 0.70 -3.95 16 22 C -0.19 -4.33 5.88 -20.08 -0.12 -4.45 16 23 C 0.40 6.85 11.45 70.16 0.80 7.65 16 24 O -0.49 -13.64 16.14 -2.97 -0.05 -13.69 16 25 C -0.05 -0.98 9.75 22.59 0.22 -0.76 16 26 C 0.10 3.03 7.24 22.62 0.16 3.19 16 27 F -0.13 -4.32 16.44 44.97 0.74 -3.59 16 28 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 32 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 33 H 0.04 2.02 7.49 -2.39 -0.02 2.00 16 34 H 0.09 4.87 5.74 -2.39 -0.01 4.85 16 35 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.14 6.12 6.73 -2.91 -0.02 6.10 16 37 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.22 1.60 8.06 -2.92 -0.02 1.58 16 Total: -1.00 -72.99 349.46 8.15 -64.84 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.14 Total: 16.39 kcal Atomic # 6 Polarization: 29.50 SS G_CDS: 5.20 Total: 34.70 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.34 Total: -67.80 kcal Atomic # 8 Polarization: -80.16 SS G_CDS: -0.31 Total: -80.47 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.44 Total: -7.53 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -72.99 8.15 -64.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.233 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds