Wall clock time and date at job start Tue Mar 31 2020 23:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21277 * 120.00243 * 2 1 4 4 C 1.46984 * 119.99859 * 179.97438 * 2 1 3 5 5 C 1.39951 * 120.19709 * 0.02562 * 4 2 1 6 6 C 1.37763 * 119.85044 * 179.97438 * 5 4 2 7 7 C 1.38517 * 120.25258 * 0.02562 * 6 5 4 8 8 S 1.76201 * 119.80151 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40157 * 336.46212 * 8 7 6 10 10 O 1.42103 * 106.40563 * 203.54154 * 8 7 6 11 11 N 1.65603 * 107.21852 * 90.00457 * 8 7 6 12 12 C 1.46495 * 120.00192 * 64.99796 * 11 8 7 13 13 C 1.52999 * 109.47129 * 159.13160 * 12 11 8 14 14 C 1.50704 * 115.55107 * 294.33133 * 13 12 11 15 15 H 1.07997 * 119.99872 * 95.26210 * 14 13 12 16 16 C 1.37877 * 119.99718 * 274.99337 * 14 13 12 17 17 N 1.31507 * 120.00371 * 355.55546 * 16 14 13 18 18 Si 1.86802 * 119.99791 * 175.55275 * 16 14 13 19 19 H 1.48497 * 109.46812 * 89.99999 * 18 16 14 20 20 H 1.48497 * 109.46973 * 210.00189 * 18 16 14 21 21 H 1.48502 * 109.47175 * 330.00101 * 18 16 14 22 22 C 1.53001 * 117.50191 * 80.00142 * 13 12 11 23 23 C 1.53005 * 117.50048 * 148.66306 * 13 12 11 24 24 C 1.38228 * 120.40000 * 0.23918 * 7 6 5 25 25 C 1.38282 * 120.14121 * 359.48342 * 24 7 6 26 26 F 1.35101 * 120.12109 * 180.25461 * 25 24 7 27 27 H 1.08993 * 109.47533 * 240.00132 * 1 2 3 28 28 H 1.08997 * 109.46965 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46883 * 120.00538 * 1 2 3 30 30 H 1.08000 * 120.07500 * 359.95691 * 5 4 2 31 31 H 1.07998 * 119.87371 * 180.02562 * 6 5 4 32 32 H 0.97007 * 119.99787 * 245.00071 * 11 8 7 33 33 H 1.08996 * 109.47309 * 39.12929 * 12 11 8 34 34 H 1.09000 * 109.47138 * 279.12686 * 12 11 8 35 35 H 0.97001 * 120.00505 * 185.00027 * 17 16 14 36 36 H 1.09000 * 117.49793 * 215.00259 * 22 13 12 37 37 H 1.09002 * 117.49496 * 0.02562 * 22 13 12 38 38 H 1.09001 * 117.49741 * 359.97438 * 23 13 12 39 39 H 1.08998 * 117.49782 * 144.97640 * 23 13 12 40 40 H 1.08005 * 119.92654 * 179.74414 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2418 -1.2729 0.0006 5 6 1.5462 -2.4873 0.0006 6 6 2.2422 -3.6762 0.0006 7 6 3.6274 -3.6740 0.0011 8 16 4.5056 -5.2015 0.0018 9 8 3.6219 -6.1721 0.5460 10 8 5.7888 -4.9265 0.5467 11 7 4.7506 -5.6268 -1.5798 12 6 5.6006 -4.7979 -2.4380 13 6 6.0852 -5.6268 -3.6293 14 6 7.0050 -6.7722 -3.2930 15 1 6.6039 -7.7665 -3.1628 16 6 8.3592 -6.5518 -3.1569 17 7 8.8600 -5.3616 -3.4059 18 14 9.4826 -7.9439 -2.6187 19 1 9.9736 -8.6742 -3.8149 20 1 10.6377 -7.3865 -1.8702 21 1 8.7294 -8.8775 -1.7433 22 6 5.1159 -5.8187 -4.7974 23 6 6.3251 -4.8925 -4.9500 24 6 4.3249 -2.4806 0.0066 25 6 3.6430 -1.2777 0.0009 26 9 4.3252 -0.1116 0.0011 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5140 -0.8900 30 1 0.4662 -2.4924 0.0009 31 1 1.7058 -4.6136 0.0002 32 1 4.3312 -6.4249 -1.9380 33 1 6.4596 -4.4455 -1.8671 34 1 5.0287 -3.9430 -2.7989 35 1 9.8199 -5.2243 -3.3809 36 1 5.1435 -6.7734 -5.3227 37 1 4.1331 -5.3540 -4.7175 38 1 6.1373 -3.8189 -4.9703 39 1 7.1484 -5.2377 -5.5754 40 1 5.4050 -2.4878 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882148402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:10 Heat of formation + Delta-G solvation = -124.976264 kcal Electronic energy + Delta-G solvation = -27473.884549 eV Core-core repulsion = 23295.410628 eV Total energy + Delta-G solvation = -4178.473921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 8.19 seconds Orbital eigenvalues (eV) -50.19952 -41.02205 -39.45578 -38.81588 -38.33321 -37.00890 -34.92998 -33.88418 -33.55878 -31.89556 -30.47976 -27.85082 -26.66265 -25.76354 -23.98258 -22.84582 -21.44917 -21.19437 -20.64846 -19.41251 -18.72609 -18.06617 -17.98045 -17.72804 -17.20402 -17.07736 -16.81999 -16.51679 -15.90754 -15.87533 -15.73987 -15.35189 -15.25474 -14.81194 -14.65292 -14.20345 -14.08821 -13.81701 -13.68006 -13.33744 -13.21284 -13.09554 -13.03960 -13.01938 -12.88674 -12.85364 -12.81839 -12.36931 -12.17920 -11.93945 -11.34248 -11.02804 -10.95424 -10.75243 -10.36944 -10.30540 -10.12706 -9.91094 -8.07394 -6.18044 -1.16081 -0.68043 -0.14429 0.96619 1.39428 1.44744 1.50907 1.94961 2.23906 2.43780 2.65866 2.72809 2.84720 3.19808 3.22084 3.50555 3.56658 3.78140 3.89704 3.98259 4.21760 4.23695 4.40083 4.55610 4.60058 4.67710 4.69235 4.69544 4.70522 4.74123 4.75926 4.80444 5.09267 5.21602 5.31456 5.35859 5.44370 5.68624 5.77934 5.83316 6.24154 6.31205 6.43804 6.88592 7.50450 8.99205 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.003374 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.412805 B = 8296.945231 C = 8673.258378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.387 3.613 3 O -0.489 6.489 4 C -0.165 4.165 5 C -0.039 4.039 6 C -0.039 4.039 7 C -0.621 4.621 8 S 2.704 3.296 9 O -0.968 6.968 10 O -0.992 6.992 11 N -1.087 6.087 12 C 0.168 3.832 13 C 0.004 3.996 14 C -0.501 4.501 15 H 0.057 0.943 16 C 0.025 3.975 17 N -0.904 5.904 18 Si 0.934 3.066 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.269 1.269 22 C -0.176 4.176 23 C -0.156 4.156 24 C -0.083 4.083 25 C 0.106 3.894 26 F -0.133 7.133 27 H 0.129 0.871 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.211 0.789 31 H 0.185 0.815 32 H 0.426 0.574 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.258 0.742 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.987 6.121 5.314 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.267 3.733 3 O -0.366 6.366 4 C -0.167 4.167 5 C -0.057 4.057 6 C -0.058 4.058 7 C -0.708 4.708 8 S 2.794 3.206 9 O -0.959 6.959 10 O -0.982 6.982 11 N -0.849 5.849 12 C 0.041 3.959 13 C 0.002 3.998 14 C -0.539 4.539 15 H 0.075 0.925 16 C -0.175 4.175 17 N -0.542 5.542 18 Si 0.760 3.240 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.194 1.194 22 C -0.213 4.213 23 C -0.195 4.195 24 C -0.103 4.103 25 C 0.085 3.915 26 F -0.112 7.112 27 H 0.147 0.853 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.228 0.772 31 H 0.203 0.797 32 H 0.263 0.737 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.117 6.542 6.194 22.958 hybrid contribution 1.633 -0.041 -0.272 1.656 sum -19.484 6.501 5.922 21.376 Atomic orbital electron populations 1.22334 0.87837 1.06741 1.07641 1.23295 0.94472 0.85616 0.69910 1.90633 1.73533 1.35337 1.37120 1.21410 0.91480 0.98918 1.04880 1.22053 1.03215 0.87913 0.92529 1.21495 0.90457 1.01935 0.91931 1.31077 1.07978 1.18386 1.13403 1.01386 0.73076 0.73501 0.72633 1.93549 1.66852 1.58445 1.77023 1.93573 1.41138 1.85875 1.77606 1.54917 1.62136 1.37940 1.29921 1.20712 0.91432 0.91459 0.92274 1.19024 0.97454 0.97080 0.86238 1.20701 0.91563 0.94002 1.47648 0.92479 1.25590 0.99689 0.97071 0.95196 1.70052 1.12224 1.22467 1.49461 0.85921 0.79019 0.80415 0.78600 1.19971 1.21696 1.19360 1.23035 0.93770 1.00349 1.04167 1.22415 0.98503 0.95893 1.02676 1.20913 1.01570 0.90442 0.97360 1.18271 0.90602 0.81251 1.01338 1.91556 1.79929 1.46398 1.93271 0.85290 0.89367 0.85323 0.77239 0.79731 0.73702 0.93350 0.91932 0.93308 0.90357 0.88071 0.90613 0.92339 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.01 8.93 71.23 0.64 -0.37 16 2 C 0.39 6.92 7.22 27.98 0.20 7.12 16 3 O -0.49 -13.78 16.08 -3.02 -0.05 -13.82 16 4 C -0.16 -3.15 5.87 -20.12 -0.12 -3.27 16 5 C -0.04 -0.44 9.47 22.57 0.21 -0.22 16 6 C -0.04 -0.63 9.50 22.22 0.21 -0.42 16 7 C -0.62 -15.39 5.95 22.33 0.13 -15.26 16 8 S 2.70 84.97 5.73 -56.49 -0.32 84.64 16 9 O -0.97 -30.54 17.26 -128.00 -2.21 -32.75 16 10 O -0.99 -40.70 16.65 -128.00 -2.13 -42.83 16 11 N -1.09 -35.48 5.88 -187.50 -1.10 -36.58 16 12 C 0.17 6.54 6.09 86.38 0.53 7.07 16 13 C 0.00 0.18 1.49 -52.92 -0.08 0.10 16 14 C -0.50 -25.73 8.75 25.60 0.22 -25.51 16 15 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 16 C 0.03 1.35 5.43 84.66 0.46 1.81 16 17 N -0.90 -50.95 12.65 21.45 0.27 -50.68 16 18 Si 0.93 43.58 29.54 68.60 2.03 45.60 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 C -0.18 -6.41 9.96 30.62 0.30 -6.11 16 23 C -0.16 -6.70 9.15 30.62 0.28 -6.42 16 24 C -0.08 -2.33 9.48 22.28 0.21 -2.12 16 25 C 0.11 2.89 7.29 22.74 0.17 3.06 16 26 F -0.13 -4.33 15.55 44.97 0.70 -3.64 16 27 H 0.13 -0.05 8.09 -2.39 -0.02 -0.07 16 28 H 0.09 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.13 -0.02 8.09 -2.38 -0.02 -0.04 16 30 H 0.21 -0.12 7.05 -2.91 -0.02 -0.14 16 31 H 0.19 1.90 7.60 -2.91 -0.02 1.88 16 32 H 0.43 12.45 8.70 -96.74 -0.84 11.61 16 33 H 0.05 2.23 7.64 -2.39 -0.02 2.21 16 34 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 35 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 36 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.14 4.44 7.59 -2.91 -0.02 4.41 16 Total: -1.00 -77.40 364.92 0.80 -76.60 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.25 Total: 13.99 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.37 Total: -40.54 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.83 Total: -87.26 kcal Atomic # 8 Polarization: -85.01 SS G_CDS: -4.39 Total: -89.40 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.70 Total: -3.64 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 84.97 SS G_CDS: -0.32 Total: 84.64 kcal Total: -77.40 0.80 -76.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882148402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.379 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.20 seconds