Wall clock time and date at job start Tue Mar 31 2020 23:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99691 * 2 1 4 4 N 1.46502 * 109.47120 * 124.99815 * 3 2 1 5 5 C 1.46493 * 120.00259 * 274.99772 * 4 3 2 6 6 C 1.50695 * 109.47280 * 275.00131 * 5 4 3 7 7 H 1.08000 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00245 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99872 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47327 * 90.00461 * 10 8 6 12 12 H 1.48509 * 109.47098 * 210.00350 * 10 8 6 13 13 H 1.48496 * 109.47337 * 330.00313 * 10 8 6 14 14 S 1.65605 * 119.99900 * 94.99596 * 4 3 2 15 15 O 1.42104 * 106.40188 * 336.46386 * 14 4 3 16 16 O 1.42106 * 106.40229 * 203.54126 * 14 4 3 17 17 C 1.76200 * 107.21975 * 90.00172 * 14 4 3 18 18 C 1.38521 * 119.80143 * 270.02576 * 17 14 4 19 19 C 1.37765 * 120.25178 * 179.73964 * 18 17 14 20 20 C 1.39945 * 119.85069 * 0.53000 * 19 18 17 21 21 C 1.46978 * 120.20016 * 179.72090 * 20 19 18 22 22 C 1.50703 * 119.99675 * 359.72547 * 21 20 19 23 23 O 1.21273 * 120.00362 * 179.72559 * 21 20 19 24 24 C 1.40126 * 119.60627 * 359.45060 * 20 19 18 25 25 F 1.35104 * 120.12617 * 180.29608 * 24 20 19 26 26 C 1.38217 * 119.79820 * 89.99597 * 17 14 4 27 27 H 1.08008 * 119.99916 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00247 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99394 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47763 * 4.99943 * 3 2 1 31 31 H 1.09007 * 109.47001 * 244.99357 * 3 2 1 32 32 H 1.09001 * 109.47037 * 34.99983 * 5 4 3 33 33 H 1.08997 * 109.47236 * 154.99509 * 5 4 3 34 34 H 0.97001 * 119.99927 * 179.97438 * 9 8 6 35 35 H 1.08003 * 119.87235 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.07335 * 180.25388 * 19 18 17 37 37 H 1.09002 * 109.47152 * 60.00014 * 22 21 20 38 38 H 1.09001 * 109.46980 * 300.00114 * 22 21 20 39 39 H 1.09004 * 109.47113 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.93125 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7622 2.4522 6 6 2.5990 3.2646 2.5449 7 1 2.9553 3.8413 1.7041 8 6 2.2098 3.9029 3.7033 9 7 2.2719 5.2141 3.7844 10 14 1.5943 2.9054 5.1578 11 1 2.7393 2.5489 6.0336 12 1 0.6124 3.7092 5.9293 13 1 0.9417 1.6651 4.6668 14 16 4.5712 0.8759 0.9174 15 8 4.5923 0.0262 -0.2214 16 8 5.0503 0.4764 2.1942 17 6 5.4768 2.3216 0.4763 18 6 5.6100 2.6702 -0.8577 19 6 6.3115 3.8014 -1.2128 20 6 6.9011 4.5950 -0.2223 21 6 7.6564 5.8002 -0.5928 22 6 7.8031 6.1811 -2.0435 23 8 8.1616 6.4880 0.2688 24 6 6.7622 4.2369 1.1253 25 9 7.3219 4.9988 2.0905 26 6 6.0496 3.1012 1.4635 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4372 2.5982 33 1 3.1612 1.3205 3.2220 34 1 1.9977 5.6632 4.5993 35 1 5.1582 2.0553 -1.6221 36 1 6.4101 4.0728 -2.2535 37 1 6.8167 6.3446 -2.4778 38 1 8.3080 5.3782 -2.5807 39 1 8.3909 7.0957 -2.1214 40 1 5.9409 2.8223 2.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882215320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:38 Heat of formation + Delta-G solvation = -97.916826 kcal Electronic energy + Delta-G solvation = -28104.198104 eV Core-core repulsion = 23926.897568 eV Total energy + Delta-G solvation = -4177.300536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.73856 -39.85512 -38.22520 -37.01802 -36.61063 -35.53984 -33.29562 -32.39100 -32.09012 -30.64879 -29.61680 -28.20453 -25.13628 -24.56763 -22.74911 -22.02909 -20.28754 -19.87535 -19.00519 -17.81423 -17.07885 -16.96742 -16.78259 -16.58246 -15.87454 -15.77927 -15.70625 -14.81398 -14.78741 -14.64514 -14.29912 -14.18491 -13.95132 -13.52044 -13.20876 -12.93787 -12.78262 -12.52175 -12.38180 -12.32699 -12.25935 -12.08406 -11.92037 -11.62994 -11.60087 -11.48099 -11.12386 -10.90772 -10.76208 -10.50190 -10.28168 -9.87590 -9.71029 -9.47537 -9.22904 -8.81519 -8.71198 -8.31209 -6.21708 -4.24436 0.09802 0.74508 1.13751 2.08266 2.46429 3.21338 3.24917 3.30344 3.32752 3.49638 3.77329 4.04561 4.13326 4.29647 4.37826 4.71055 4.84668 4.98189 5.08951 5.13771 5.14588 5.16697 5.20806 5.28726 5.37565 5.50031 5.61849 5.84728 5.86373 5.89802 5.97127 6.03628 6.10366 6.24522 6.69003 6.74237 6.81797 6.84817 7.00870 7.21778 7.32078 7.44274 8.31836 8.79691 9.37647 10.90234 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005122 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.884582 B = 5465.749300 C = 7018.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.164 4.164 3 C 0.154 3.846 4 N -0.968 5.968 5 C 0.212 3.788 6 C -0.550 4.550 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.888 5.888 10 Si 0.867 3.133 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.687 3.313 15 O -0.964 6.964 16 O -0.951 6.951 17 C -0.612 4.612 18 C -0.053 4.053 19 C -0.073 4.073 20 C -0.166 4.166 21 C 0.388 3.612 22 C -0.196 4.196 23 O -0.438 6.438 24 C 0.142 3.858 25 F -0.112 7.112 26 C -0.040 4.040 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -4.784 -13.293 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.184 4.184 3 C 0.029 3.971 4 N -0.806 5.806 5 C 0.089 3.911 6 C -0.588 4.588 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.693 3.307 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.775 3.225 15 O -0.954 6.954 16 O -0.942 6.942 17 C -0.696 4.696 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.168 4.168 21 C 0.265 3.735 22 C -0.253 4.253 23 O -0.312 6.312 24 C 0.121 3.879 25 F -0.090 7.090 26 C -0.060 4.060 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.086 -5.003 -12.564 14.448 hybrid contribution -0.325 0.613 0.912 1.146 sum 4.761 -4.390 -11.651 13.330 Atomic orbital electron populations 1.23832 0.95806 1.01774 1.00821 1.23433 0.96360 0.99196 0.99456 1.20295 0.93198 0.95905 0.87746 1.57170 1.23636 1.82447 1.17350 1.19703 0.96877 0.96403 0.78124 1.21397 1.46000 0.89675 1.01769 0.90216 1.24839 0.94659 0.94735 0.98263 1.69888 1.46866 1.07761 1.28035 0.86988 0.79621 0.80757 0.83348 1.19590 1.20953 1.18612 1.02202 0.73022 0.73839 0.73415 1.93546 1.86798 1.62714 1.52385 1.93569 1.79905 1.80267 1.40424 1.31443 1.14349 1.23449 1.00373 1.20868 0.96121 0.95972 0.94304 1.21324 0.95429 0.93483 0.98942 1.20888 1.03626 0.99415 0.92872 1.22431 0.76470 0.82630 0.92014 1.22228 1.04871 1.04163 0.94009 1.90623 1.38199 1.49227 1.53169 1.17928 0.94824 0.90251 0.84896 1.91604 1.82083 1.73877 1.61474 1.20952 0.92335 0.91420 1.01258 0.88744 0.88234 0.87307 0.88904 0.90275 0.93776 0.93618 0.92341 0.83318 0.83513 0.88471 0.88646 0.89438 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.01 0.42 -1.88 16 2 C -0.16 -2.32 9.84 -36.03 -0.35 -2.67 16 3 C 0.15 2.35 5.78 -5.20 -0.03 2.32 16 4 N -0.97 -17.76 2.75 -116.96 -0.32 -18.08 16 5 C 0.21 4.62 4.50 -5.20 -0.02 4.60 16 6 C -0.55 -13.94 9.94 -34.44 -0.34 -14.28 16 7 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -25.68 13.96 55.43 0.77 -24.90 16 10 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 14 S 2.69 47.81 5.64 -107.50 -0.61 47.21 16 15 O -0.96 -16.62 16.23 -57.17 -0.93 -17.55 16 16 O -0.95 -19.53 15.81 -57.17 -0.90 -20.44 16 17 C -0.61 -10.17 5.98 -39.48 -0.24 -10.41 16 18 C -0.05 -0.71 9.50 -39.65 -0.38 -1.08 16 19 C -0.07 -0.85 9.47 -39.12 -0.37 -1.22 16 20 C -0.17 -2.44 5.87 -105.01 -0.62 -3.06 16 21 C 0.39 5.28 7.22 -30.77 -0.22 5.05 16 22 C -0.20 -1.56 8.93 36.01 0.32 -1.24 16 23 O -0.44 -7.72 16.08 5.56 0.09 -7.63 16 24 C 0.14 2.56 7.29 -38.86 -0.28 2.27 16 25 F -0.11 -2.24 15.55 2.25 0.04 -2.21 16 26 C -0.04 -0.73 9.48 -39.57 -0.38 -1.11 16 27 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 31 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 32 H 0.04 0.95 7.17 -51.93 -0.37 0.57 16 33 H 0.05 1.03 6.34 -51.93 -0.33 0.70 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 1.56 7.60 -52.48 -0.40 1.16 16 36 H 0.15 1.02 7.05 -52.49 -0.37 0.65 16 37 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.16 3.07 7.60 -52.48 -0.40 2.67 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -33.25 363.59 -8.42 -41.67 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.78 Total: 1.57 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.59 Total: -20.67 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.45 Total: -42.99 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.74 Total: -45.62 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 16 Polarization: 47.81 SS G_CDS: -0.61 Total: 47.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.25 -8.42 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882215320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.252 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds