Wall clock time and date at job start Tue Mar 31 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99691 * 2 1 4 4 N 1.46502 * 109.47120 * 124.99815 * 3 2 1 5 5 C 1.46493 * 120.00259 * 274.99772 * 4 3 2 6 6 C 1.50695 * 109.47280 * 275.00131 * 5 4 3 7 7 H 1.08000 * 119.99749 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00245 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99872 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47327 * 90.00461 * 10 8 6 12 12 H 1.48509 * 109.47098 * 210.00350 * 10 8 6 13 13 H 1.48496 * 109.47337 * 330.00313 * 10 8 6 14 14 S 1.65605 * 119.99900 * 94.99596 * 4 3 2 15 15 O 1.42104 * 106.40188 * 336.46386 * 14 4 3 16 16 O 1.42106 * 106.40229 * 203.54126 * 14 4 3 17 17 C 1.76200 * 107.21975 * 90.00172 * 14 4 3 18 18 C 1.38521 * 119.80143 * 270.02576 * 17 14 4 19 19 C 1.37765 * 120.25178 * 179.73964 * 18 17 14 20 20 C 1.39945 * 119.85069 * 0.53000 * 19 18 17 21 21 C 1.46978 * 120.20016 * 179.72090 * 20 19 18 22 22 C 1.50703 * 119.99675 * 359.72547 * 21 20 19 23 23 O 1.21273 * 120.00362 * 179.72559 * 21 20 19 24 24 C 1.40126 * 119.60627 * 359.45060 * 20 19 18 25 25 F 1.35104 * 120.12617 * 180.29608 * 24 20 19 26 26 C 1.38217 * 119.79820 * 89.99597 * 17 14 4 27 27 H 1.08008 * 119.99916 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00247 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99394 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47763 * 4.99943 * 3 2 1 31 31 H 1.09007 * 109.47001 * 244.99357 * 3 2 1 32 32 H 1.09001 * 109.47037 * 34.99983 * 5 4 3 33 33 H 1.08997 * 109.47236 * 154.99509 * 5 4 3 34 34 H 0.97001 * 119.99927 * 179.97438 * 9 8 6 35 35 H 1.08003 * 119.87235 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.07335 * 180.25388 * 19 18 17 37 37 H 1.09002 * 109.47152 * 60.00014 * 22 21 20 38 38 H 1.09001 * 109.46980 * 300.00114 * 22 21 20 39 39 H 1.09004 * 109.47113 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.93125 * 0.02562 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7622 2.4522 6 6 2.5990 3.2646 2.5449 7 1 2.9553 3.8413 1.7041 8 6 2.2098 3.9029 3.7033 9 7 2.2719 5.2141 3.7844 10 14 1.5943 2.9054 5.1578 11 1 2.7393 2.5489 6.0336 12 1 0.6124 3.7092 5.9293 13 1 0.9417 1.6651 4.6668 14 16 4.5712 0.8759 0.9174 15 8 4.5923 0.0262 -0.2214 16 8 5.0503 0.4764 2.1942 17 6 5.4768 2.3216 0.4763 18 6 5.6100 2.6702 -0.8577 19 6 6.3115 3.8014 -1.2128 20 6 6.9011 4.5950 -0.2223 21 6 7.6564 5.8002 -0.5928 22 6 7.8031 6.1811 -2.0435 23 8 8.1616 6.4880 0.2688 24 6 6.7622 4.2369 1.1253 25 9 7.3219 4.9988 2.0905 26 6 6.0496 3.1012 1.4635 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4025 -0.9314 32 1 1.4983 1.4372 2.5982 33 1 3.1612 1.3205 3.2220 34 1 1.9977 5.6632 4.5993 35 1 5.1582 2.0553 -1.6221 36 1 6.4101 4.0728 -2.2535 37 1 6.8167 6.3446 -2.4778 38 1 8.3080 5.3782 -2.5807 39 1 8.3909 7.0957 -2.1214 40 1 5.9409 2.8223 2.5012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882215320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:30 Heat of formation + Delta-G solvation = -120.717939 kcal Electronic energy + Delta-G solvation = -28105.186835 eV Core-core repulsion = 23926.897568 eV Total energy + Delta-G solvation = -4178.289266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -50.16894 -40.98925 -39.40995 -38.46249 -38.02178 -37.01029 -34.96177 -33.67208 -33.51609 -31.85230 -30.46291 -29.92817 -26.52832 -25.72989 -23.94457 -23.81078 -21.37779 -20.98647 -20.35140 -19.19996 -18.94438 -18.44991 -18.07925 -17.74602 -17.26948 -17.14856 -17.03942 -16.24824 -15.90658 -15.90329 -15.79032 -15.38125 -15.26488 -14.72904 -14.58915 -14.47920 -14.16918 -13.89446 -13.68772 -13.54664 -13.36442 -13.25986 -13.10814 -13.09000 -13.04403 -12.88307 -12.51481 -12.41913 -12.16490 -12.01667 -11.89180 -11.67997 -10.97575 -10.80053 -10.68279 -10.27916 -10.06857 -9.84603 -8.30222 -6.34934 -1.11061 -0.64367 -0.07233 0.98638 1.34618 1.39091 1.40831 1.46010 1.97065 2.24591 2.33103 2.65026 2.77004 2.88736 3.05707 3.20750 3.49660 3.81135 3.88314 3.94219 4.02255 4.17976 4.26860 4.43623 4.44916 4.67142 4.68685 4.71361 4.73403 4.78023 4.81799 4.89522 4.98446 5.13745 5.20044 5.28367 5.44677 5.50323 5.62655 5.81364 5.98567 6.26801 6.31999 6.71047 7.29957 8.84727 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005122 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.884582 B = 5465.749300 C = 7018.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.186 4.186 3 C 0.145 3.855 4 N -0.972 5.972 5 C 0.220 3.780 6 C -0.534 4.534 7 H 0.052 0.948 8 C 0.022 3.978 9 N -0.938 5.938 10 Si 0.919 3.081 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.235 1.235 14 S 2.698 3.302 15 O -0.955 6.955 16 O -0.987 6.987 17 C -0.624 4.624 18 C -0.046 4.046 19 C -0.043 4.043 20 C -0.170 4.170 21 C 0.386 3.614 22 C -0.186 4.186 23 O -0.493 6.493 24 C 0.099 3.901 25 F -0.138 7.138 26 C -0.069 4.069 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.189 0.811 36 H 0.213 0.787 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -6.219 -17.159 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C 0.021 3.979 4 N -0.810 5.810 5 C 0.095 3.905 6 C -0.574 4.574 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.578 5.578 10 Si 0.743 3.257 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.158 1.158 14 S 2.788 3.212 15 O -0.945 6.945 16 O -0.978 6.978 17 C -0.710 4.710 18 C -0.065 4.065 19 C -0.061 4.061 20 C -0.172 4.172 21 C 0.266 3.734 22 C -0.242 4.242 23 O -0.370 6.370 24 C 0.078 3.922 25 F -0.116 7.116 26 C -0.090 4.090 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.206 0.794 36 H 0.230 0.770 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.108 0.892 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.157 -6.496 -16.464 18.181 hybrid contribution -0.025 1.054 1.935 2.203 sum 4.132 -5.442 -14.529 16.056 Atomic orbital electron populations 1.24064 0.95369 1.02953 0.98229 1.23375 0.96917 0.98518 1.01810 1.20579 0.93178 0.96605 0.87588 1.57117 1.24515 1.82326 1.17000 1.19406 0.97354 0.93709 0.80027 1.21617 1.43751 0.91527 1.00466 0.92950 1.25634 0.95417 0.95510 1.01194 1.70028 1.49311 1.09623 1.28851 0.86133 0.79085 0.80397 0.80114 1.20090 1.20756 1.15756 1.01719 0.72658 0.73970 0.72851 1.93545 1.86706 1.62700 1.51541 1.93521 1.80456 1.81328 1.42471 1.31273 1.14909 1.22946 1.01877 1.21501 0.95110 0.96590 0.93308 1.22041 0.91900 0.91147 1.01047 1.21421 1.03524 1.00492 0.91796 1.23373 0.74517 0.81146 0.94389 1.22325 1.07033 1.05552 0.89302 1.90616 1.40425 1.50651 1.55317 1.18392 0.96622 0.90784 0.86377 1.91523 1.82795 1.74556 1.62768 1.20781 0.94577 0.92892 1.00705 0.86692 0.87922 0.87177 0.89475 0.87596 0.92664 0.94435 0.92572 0.79376 0.77028 0.85543 0.84876 0.89182 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.19 -4.78 9.84 25.64 0.25 -4.52 16 3 C 0.14 4.12 5.78 85.63 0.50 4.62 16 4 N -0.97 -34.95 2.75 -523.95 -1.44 -36.39 16 5 C 0.22 9.57 4.50 85.63 0.39 9.95 16 6 C -0.53 -27.83 9.94 25.60 0.25 -27.57 16 7 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 8 C 0.02 1.20 5.47 84.65 0.46 1.66 16 9 N -0.94 -56.51 13.96 21.45 0.30 -56.21 16 10 Si 0.92 42.14 27.47 68.60 1.88 44.02 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 H -0.23 -9.64 6.54 99.48 0.65 -8.99 16 14 S 2.70 94.78 5.64 -56.49 -0.32 94.47 16 15 O -0.95 -30.73 16.23 -128.00 -2.08 -32.81 16 16 O -0.99 -41.81 15.81 -128.00 -2.02 -43.83 16 17 C -0.62 -20.57 5.98 22.33 0.13 -20.44 16 18 C -0.05 -1.06 9.50 22.23 0.21 -0.85 16 19 C -0.04 -0.81 9.47 22.57 0.21 -0.60 16 20 C -0.17 -4.81 5.87 -20.12 -0.12 -4.93 16 21 C 0.39 9.94 7.22 27.98 0.20 10.15 16 22 C -0.19 -2.10 8.93 71.24 0.64 -1.46 16 23 O -0.49 -17.89 16.08 -3.01 -0.05 -17.94 16 24 C 0.10 3.78 7.29 22.74 0.17 3.95 16 25 F -0.14 -6.08 15.55 44.97 0.70 -5.38 16 26 C -0.07 -2.72 9.48 22.27 0.21 -2.51 16 27 H 0.11 2.05 8.06 -2.91 -0.02 2.02 16 28 H 0.10 2.19 7.84 -2.91 -0.02 2.16 16 29 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.09 2.56 7.76 -2.39 -0.02 2.54 16 31 H 0.11 2.37 7.61 -2.38 -0.02 2.35 16 32 H 0.06 2.29 7.17 -2.39 -0.02 2.27 16 33 H 0.04 1.72 6.34 -2.39 -0.02 1.70 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.19 2.85 7.60 -2.91 -0.02 2.83 16 36 H 0.21 1.21 7.05 -2.91 -0.02 1.19 16 37 H 0.13 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.13 0.58 8.09 -2.39 -0.02 0.56 16 39 H 0.09 1.06 8.12 -2.38 -0.02 1.04 16 40 H 0.13 5.74 7.60 -2.91 -0.02 5.72 16 Total: -1.00 -79.64 363.59 2.46 -77.19 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.01 Total: 12.17 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 4.48 Total: -35.28 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -1.14 Total: -92.60 kcal Atomic # 8 Polarization: -90.43 SS G_CDS: -4.15 Total: -94.58 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.70 Total: -5.38 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Atomic # 16 Polarization: 94.78 SS G_CDS: -0.32 Total: 94.47 kcal Total: -79.64 2.46 -77.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882215320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.532 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds