Wall clock time and date at job start Tue Mar 31 2020 22:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.46704 * 2 1 4 4 C 1.52722 * 109.32752 * 240.26592 * 2 1 3 5 5 S 1.81741 * 108.84053 * 182.43082 * 4 2 1 6 6 C 1.81744 * 102.30792 * 54.42705 * 5 4 2 7 7 C 1.53239 * 108.79572 * 305.46051 * 6 5 4 8 8 N 1.46379 * 109.48872 * 57.65699 * 7 6 5 9 9 S 1.65596 * 119.64731 * 114.91114 * 8 7 6 10 10 O 1.42102 * 106.39988 * 146.87386 * 9 8 7 11 11 O 1.42099 * 106.40209 * 13.95591 * 9 8 7 12 12 C 1.76201 * 107.21886 * 260.41369 * 9 8 7 13 13 C 1.38240 * 119.99771 * 82.19179 * 12 9 8 14 14 C 1.38229 * 119.99753 * 179.97438 * 13 12 9 15 15 C 1.38243 * 120.00092 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99731 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47285 * 90.00375 * 16 15 14 18 18 H 1.08004 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99993 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47130 * 90.00227 * 21 19 17 23 23 H 1.48503 * 109.47045 * 209.99765 * 21 19 17 24 24 H 1.48497 * 109.47274 * 330.00213 * 21 19 17 25 25 C 1.38234 * 120.00065 * 0.07245 * 15 14 13 26 26 C 1.38232 * 120.00159 * 262.21531 * 12 9 8 27 27 H 1.09003 * 109.46812 * 308.72338 * 1 2 3 28 28 H 1.08999 * 109.47432 * 68.71962 * 1 2 3 29 29 H 1.09004 * 109.47389 * 188.72336 * 1 2 3 30 30 H 1.09001 * 109.65634 * 62.57286 * 4 2 1 31 31 H 1.09001 * 109.58675 * 302.24824 * 4 2 1 32 32 H 1.09006 * 109.58406 * 185.66801 * 6 5 4 33 33 H 1.08998 * 109.69475 * 65.32086 * 6 5 4 34 34 H 1.08998 * 109.46837 * 297.64943 * 7 6 5 35 35 H 1.09004 * 109.46871 * 177.65997 * 7 6 5 36 36 H 1.07992 * 119.99846 * 359.97438 * 13 12 9 37 37 H 1.07997 * 120.00117 * 179.72375 * 14 13 12 38 38 H 1.09002 * 109.47157 * 209.99611 * 16 15 14 39 39 H 1.08996 * 109.47484 * 329.99688 * 16 15 14 40 40 H 0.97000 * 119.99953 * 180.02562 * 20 19 17 41 41 H 1.07990 * 120.00268 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.00074 * 359.97330 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0354 -0.7148 -1.2514 5 16 3.8513 -0.7707 -1.2023 6 6 4.1715 -1.5457 0.4102 7 6 3.4493 -0.7417 1.4965 8 7 2.0178 -0.6899 1.1953 9 16 0.9392 -1.4254 2.2142 10 8 -0.2432 -0.6379 2.1830 11 8 1.6498 -1.7136 3.4105 12 6 0.5209 -2.9797 1.4972 13 6 1.3541 -4.0686 1.6731 14 6 1.0257 -5.2880 1.1111 15 6 -0.1361 -5.4187 0.3735 16 6 -0.4938 -6.7480 -0.2397 17 6 -1.3221 -7.5444 0.7353 18 1 -1.5649 -7.1296 1.7025 19 6 -1.7700 -8.8026 0.3927 20 7 -1.4740 -9.3079 -0.7849 21 14 -2.7962 -9.7900 1.6016 22 1 -4.2352 -9.4911 1.3891 23 1 -2.5549 -11.2395 1.3873 24 1 -2.4143 -9.4243 2.9892 25 6 -0.9688 -4.3296 0.1967 26 6 -0.6401 -3.1100 0.7583 27 1 -0.3633 0.6429 0.8018 28 1 -0.3634 0.3730 -0.9576 29 1 -0.3634 -1.0158 0.1559 30 1 1.7106 -0.1728 -2.1396 31 1 1.6393 -1.7299 -1.2775 32 1 5.2434 -1.5471 0.6085 33 1 3.7995 -2.5702 0.4057 34 1 3.8511 0.2710 1.5266 35 1 3.5999 -1.2211 2.4639 36 1 2.2616 -3.9666 2.2497 37 1 1.6789 -6.1377 1.2448 38 1 -1.0654 -6.5847 -1.1533 39 1 0.4181 -7.2968 -0.4749 40 1 -1.7894 -10.1929 -1.0260 41 1 -1.8762 -4.4315 -0.3798 42 1 -1.2911 -2.2592 0.6209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885020536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:13 Heat of formation + Delta-G solvation = -36.706340 kcal Electronic energy + Delta-G solvation = -26085.744987 eV Core-core repulsion = 22477.311913 eV Total energy + Delta-G solvation = -3608.433074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.97533 -38.36999 -37.47581 -35.89407 -33.76136 -33.20661 -31.63455 -30.69692 -29.73225 -27.61008 -27.40608 -23.83436 -23.45986 -22.49363 -22.15667 -20.90877 -19.02931 -18.10913 -17.40898 -16.68367 -16.49773 -16.28178 -15.32385 -15.21375 -15.02591 -14.68161 -14.49914 -14.44218 -14.11693 -13.85300 -13.60307 -13.43284 -12.99989 -12.89944 -12.68736 -12.41034 -12.24159 -12.10472 -11.91001 -11.78797 -11.56011 -11.47867 -11.26208 -11.02308 -10.93080 -10.84289 -10.58197 -10.49030 -9.98662 -9.79142 -9.72264 -9.51939 -8.67311 -8.57701 -8.44598 -7.91003 -6.20793 -4.26178 0.33264 1.23504 1.49486 1.70015 2.23671 2.77370 3.21645 3.28424 3.32499 3.65084 3.97824 4.21985 4.25050 4.34110 4.42443 4.62154 4.75572 4.78412 4.95034 5.03748 5.07935 5.15902 5.16972 5.21416 5.34018 5.44895 5.52350 5.61566 5.66676 5.69748 5.82411 5.83235 6.16053 6.22056 6.24831 6.28251 6.44475 6.75969 6.83695 7.22926 7.36142 7.52983 7.73984 8.08665 8.78533 9.39115 10.89216 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.003283 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.925618 B = 8526.330216 C = 9031.252869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.156 3.844 3 H 0.095 0.905 4 C -0.100 4.100 5 S -0.257 6.257 6 C -0.105 4.105 7 C 0.113 3.887 8 N -0.997 5.997 9 S 2.691 3.309 10 O -0.957 6.957 11 O -0.964 6.964 12 C -0.705 4.705 13 C -0.023 4.023 14 C -0.143 4.143 15 C 0.028 3.972 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.143 4.143 26 C -0.030 4.030 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 19.424 0.237 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.048 3.952 3 H 0.113 0.887 4 C -0.250 4.250 5 S -0.029 6.029 6 C -0.255 4.255 7 C -0.014 4.014 8 N -0.834 5.834 9 S 2.786 3.214 10 O -0.947 6.947 11 O -0.954 6.954 12 C -0.794 4.794 13 C -0.043 4.043 14 C -0.162 4.162 15 C 0.028 3.972 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.162 4.162 26 C -0.049 4.049 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.843 19.976 0.133 22.269 hybrid contribution -1.348 -1.873 0.800 2.442 sum 8.495 18.103 0.933 20.019 Atomic orbital electron populations 1.23060 0.91917 1.05676 1.04844 1.20980 0.95213 0.96358 0.82615 0.88741 1.23933 0.93845 1.05477 1.01757 1.86816 1.08268 1.81339 1.26464 1.23902 1.04860 1.02304 0.94421 1.21588 0.79130 1.02059 0.98581 1.57692 1.17708 1.68702 1.39334 1.01929 0.72999 0.73683 0.72809 1.93631 1.46980 1.67607 1.86476 1.93528 1.73621 1.85611 1.42669 1.30353 1.07265 1.20686 1.21109 1.20692 0.96852 0.92188 0.94536 1.21242 0.98431 0.97030 0.99498 1.21132 0.90293 0.96847 0.88961 1.18542 0.97927 0.86938 0.96336 1.20960 1.33054 1.00473 1.01204 0.92295 1.24997 0.96111 0.97495 0.95460 1.69943 1.45314 1.17444 1.20200 0.86480 0.80466 0.79131 0.81345 1.20415 1.20989 1.19689 1.21261 1.00577 0.92286 1.02090 1.20893 0.93419 0.98265 0.92297 0.87321 0.90753 0.91032 0.86606 0.88899 0.86507 0.89075 0.89221 0.87148 0.85708 0.85333 0.94692 0.94702 0.92585 0.85269 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 7.52 37.16 0.28 -1.57 16 2 C 0.16 1.39 3.32 -68.14 -0.23 1.17 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -0.90 5.90 37.01 0.22 -0.68 16 5 S -0.26 -2.52 22.29 -107.50 -2.40 -4.91 16 6 C -0.10 -0.89 6.67 37.28 0.25 -0.64 16 7 C 0.11 0.96 6.29 -3.98 -0.03 0.94 16 8 N -1.00 -10.14 3.10 -107.49 -0.33 -10.47 16 9 S 2.69 35.81 5.17 -107.50 -0.56 35.26 16 10 O -0.96 -13.83 12.54 -57.17 -0.72 -14.55 16 11 O -0.96 -14.93 15.78 -57.17 -0.90 -15.83 16 12 C -0.70 -10.57 5.84 -39.58 -0.23 -10.81 16 13 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 14 C -0.14 -2.57 9.70 -39.58 -0.38 -2.96 16 15 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 16 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 17 C -0.52 -13.90 9.09 -34.44 -0.31 -14.22 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.14 -2.56 9.70 -39.58 -0.38 -2.94 16 26 C -0.03 -0.46 8.37 -39.58 -0.33 -0.79 16 27 H 0.11 1.14 6.31 -51.93 -0.33 0.81 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.77 2.81 -51.93 -0.15 0.62 16 30 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.12 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.11 0.94 6.61 -51.93 -0.34 0.59 16 36 H 0.13 1.64 7.81 -52.49 -0.41 1.23 16 37 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.14 1.79 5.82 -52.48 -0.31 1.49 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -31.32 355.27 -11.85 -43.17 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.72 Total: 1.45 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -2.30 Total: -30.82 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.40 Total: -35.03 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.62 Total: -30.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -2.95 Total: 30.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.32 -11.85 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885020536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.464 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds