Wall clock time and date at job start Tue Mar 31 2020 22:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.46704 * 2 1 4 4 C 1.52722 * 109.32752 * 240.26592 * 2 1 3 5 5 S 1.81741 * 108.84053 * 182.43082 * 4 2 1 6 6 C 1.81744 * 102.30792 * 54.42705 * 5 4 2 7 7 C 1.53239 * 108.79572 * 305.46051 * 6 5 4 8 8 N 1.46379 * 109.48872 * 57.65699 * 7 6 5 9 9 S 1.65596 * 119.64731 * 114.91114 * 8 7 6 10 10 O 1.42102 * 106.39988 * 146.87386 * 9 8 7 11 11 O 1.42099 * 106.40209 * 13.95591 * 9 8 7 12 12 C 1.76201 * 107.21886 * 260.41369 * 9 8 7 13 13 C 1.38240 * 119.99771 * 82.19179 * 12 9 8 14 14 C 1.38229 * 119.99753 * 179.97438 * 13 12 9 15 15 C 1.38243 * 120.00092 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99731 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47285 * 90.00375 * 16 15 14 18 18 H 1.08004 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99993 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99877 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47130 * 90.00227 * 21 19 17 23 23 H 1.48503 * 109.47045 * 209.99765 * 21 19 17 24 24 H 1.48497 * 109.47274 * 330.00213 * 21 19 17 25 25 C 1.38234 * 120.00065 * 0.07245 * 15 14 13 26 26 C 1.38232 * 120.00159 * 262.21531 * 12 9 8 27 27 H 1.09003 * 109.46812 * 308.72338 * 1 2 3 28 28 H 1.08999 * 109.47432 * 68.71962 * 1 2 3 29 29 H 1.09004 * 109.47389 * 188.72336 * 1 2 3 30 30 H 1.09001 * 109.65634 * 62.57286 * 4 2 1 31 31 H 1.09001 * 109.58675 * 302.24824 * 4 2 1 32 32 H 1.09006 * 109.58406 * 185.66801 * 6 5 4 33 33 H 1.08998 * 109.69475 * 65.32086 * 6 5 4 34 34 H 1.08998 * 109.46837 * 297.64943 * 7 6 5 35 35 H 1.09004 * 109.46871 * 177.65997 * 7 6 5 36 36 H 1.07992 * 119.99846 * 359.97438 * 13 12 9 37 37 H 1.07997 * 120.00117 * 179.72375 * 14 13 12 38 38 H 1.09002 * 109.47157 * 209.99611 * 16 15 14 39 39 H 1.08996 * 109.47484 * 329.99688 * 16 15 14 40 40 H 0.97000 * 119.99953 * 180.02562 * 20 19 17 41 41 H 1.07990 * 120.00268 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.00074 * 359.97330 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0354 -0.7148 -1.2514 5 16 3.8513 -0.7707 -1.2023 6 6 4.1715 -1.5457 0.4102 7 6 3.4493 -0.7417 1.4965 8 7 2.0178 -0.6899 1.1953 9 16 0.9392 -1.4254 2.2142 10 8 -0.2432 -0.6379 2.1830 11 8 1.6498 -1.7136 3.4105 12 6 0.5209 -2.9797 1.4972 13 6 1.3541 -4.0686 1.6731 14 6 1.0257 -5.2880 1.1111 15 6 -0.1361 -5.4187 0.3735 16 6 -0.4938 -6.7480 -0.2397 17 6 -1.3221 -7.5444 0.7353 18 1 -1.5649 -7.1296 1.7025 19 6 -1.7700 -8.8026 0.3927 20 7 -1.4740 -9.3079 -0.7849 21 14 -2.7962 -9.7900 1.6016 22 1 -4.2352 -9.4911 1.3891 23 1 -2.5549 -11.2395 1.3873 24 1 -2.4143 -9.4243 2.9892 25 6 -0.9688 -4.3296 0.1967 26 6 -0.6401 -3.1100 0.7583 27 1 -0.3633 0.6429 0.8018 28 1 -0.3634 0.3730 -0.9576 29 1 -0.3634 -1.0158 0.1559 30 1 1.7106 -0.1728 -2.1396 31 1 1.6393 -1.7299 -1.2775 32 1 5.2434 -1.5471 0.6085 33 1 3.7995 -2.5702 0.4057 34 1 3.8511 0.2710 1.5266 35 1 3.5999 -1.2211 2.4639 36 1 2.2616 -3.9666 2.2497 37 1 1.6789 -6.1377 1.2448 38 1 -1.0654 -6.5847 -1.1533 39 1 0.4181 -7.2968 -0.4749 40 1 -1.7894 -10.1929 -1.0260 41 1 -1.8762 -4.4315 -0.3798 42 1 -1.2911 -2.2592 0.6209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885020536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:54 Heat of formation + Delta-G solvation = -54.872588 kcal Electronic energy + Delta-G solvation = -26086.532735 eV Core-core repulsion = 22477.311913 eV Total energy + Delta-G solvation = -3609.220822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 27.67 seconds Orbital eigenvalues (eV) -40.32494 -39.22955 -38.51023 -37.02205 -35.63302 -33.96298 -33.34460 -32.02467 -30.49204 -29.29898 -28.22543 -25.63314 -24.19628 -23.80843 -23.00110 -22.41393 -20.06358 -19.21451 -18.59580 -18.29315 -17.58519 -17.14109 -16.88175 -16.41843 -16.09106 -15.86318 -15.65277 -15.36459 -15.25460 -14.82218 -14.65565 -14.58813 -14.43283 -14.01058 -13.75653 -13.58271 -13.44054 -13.42143 -13.22340 -13.07463 -12.79300 -12.69753 -12.66707 -12.35417 -12.14315 -12.04467 -11.89212 -11.71796 -11.68140 -11.38581 -10.73660 -10.67278 -10.36551 -9.99631 -9.94591 -8.66428 -8.29018 -6.42050 -0.73179 -0.10249 0.35238 0.79681 1.37154 1.37526 1.48917 1.54237 1.81084 2.32923 2.52773 2.72389 3.03807 3.20646 3.45134 3.67863 3.80780 3.87734 3.92953 4.09486 4.11457 4.14472 4.28371 4.35700 4.43382 4.51431 4.56664 4.66865 4.75848 4.78589 4.84949 4.88621 4.92580 5.05498 5.11235 5.20999 5.23467 5.29638 5.51439 5.52773 5.64885 5.83008 5.88554 6.07141 6.69779 7.27367 8.81096 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.003283 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.925618 B = 8526.330216 C = 9031.252869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.157 3.843 3 H 0.117 0.883 4 C -0.096 4.096 5 S -0.282 6.282 6 C -0.101 4.101 7 C 0.108 3.892 8 N -0.989 5.989 9 S 2.711 3.289 10 O -0.965 6.965 11 O -0.982 6.982 12 C -0.702 4.702 13 C -0.019 4.019 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.049 3.951 17 C -0.535 4.535 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.153 4.153 26 C -0.022 4.022 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.268 0.732 41 H 0.130 0.870 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 21.594 1.267 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.050 3.950 3 H 0.135 0.865 4 C -0.246 4.246 5 S -0.054 6.054 6 C -0.251 4.251 7 C -0.018 4.018 8 N -0.828 5.828 9 S 2.803 3.197 10 O -0.955 6.955 11 O -0.973 6.973 12 C -0.789 4.789 13 C -0.038 4.038 14 C -0.172 4.172 15 C -0.003 4.003 16 C 0.012 3.988 17 C -0.573 4.573 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.172 4.172 26 C -0.041 4.041 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.170 0.830 37 H 0.146 0.854 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 10.329 22.124 1.157 24.444 hybrid contribution -1.416 -2.396 0.449 2.819 sum 8.914 19.728 1.607 21.708 Atomic orbital electron populations 1.23053 0.92209 1.04553 1.05957 1.21142 0.94957 0.97167 0.81777 0.86545 1.23945 0.93060 1.04890 1.02663 1.86931 1.09167 1.81417 1.27909 1.23960 1.06212 1.01493 0.93414 1.21826 0.77871 1.03495 0.98587 1.57522 1.18112 1.67714 1.39467 1.01416 0.72922 0.72791 0.72526 1.93635 1.48024 1.67162 1.86723 1.93504 1.74003 1.85765 1.43979 1.30876 1.06556 1.21928 1.19500 1.20944 0.97775 0.91185 0.93896 1.21281 0.97887 0.98286 0.99788 1.20815 0.92439 0.95687 0.91360 1.18254 0.96143 0.89033 0.95387 1.21285 1.33368 1.01161 1.01442 0.92808 1.25853 0.97234 0.98598 0.97136 1.70053 1.46507 1.17951 1.21934 0.85467 0.78975 0.77691 0.79082 1.19603 1.20306 1.19231 1.21307 1.00441 0.92720 1.02699 1.21135 0.93794 0.97880 0.91264 0.88109 0.88374 0.92558 0.84823 0.90456 0.84426 0.90055 0.86924 0.86852 0.83030 0.85415 0.96877 0.96979 0.92353 0.85230 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.21 7.52 71.98 0.54 -2.67 16 2 C 0.16 2.33 3.32 44.92 0.15 2.48 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.10 -1.51 5.90 71.89 0.42 -1.08 16 5 S -0.28 -4.94 22.29 -56.49 -1.26 -6.20 16 6 C -0.10 -1.46 6.67 72.06 0.48 -0.98 16 7 C 0.11 1.51 6.29 86.48 0.54 2.06 16 8 N -0.99 -17.37 3.10 -494.00 -1.53 -18.90 16 9 S 2.71 65.95 5.17 -56.49 -0.29 65.66 16 10 O -0.97 -25.66 12.54 -128.00 -1.61 -27.26 16 11 O -0.98 -28.09 15.78 -128.00 -2.02 -30.11 16 12 C -0.70 -20.05 5.84 22.27 0.13 -19.92 16 13 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 14 C -0.15 -5.62 9.70 22.27 0.22 -5.40 16 15 C 0.00 -0.11 5.07 -19.87 -0.10 -0.21 16 16 C 0.05 2.48 5.10 29.10 0.15 2.63 16 17 C -0.53 -29.64 9.09 25.60 0.23 -29.40 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 21 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.15 -5.55 9.70 22.27 0.22 -5.33 16 26 C -0.02 -0.66 8.37 22.27 0.19 -0.47 16 27 H 0.10 1.85 6.31 -2.39 -0.02 1.83 16 28 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.06 1.08 2.81 -2.39 -0.01 1.08 16 30 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.14 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.58 6.61 -2.38 -0.02 1.57 16 36 H 0.15 3.69 7.81 -2.91 -0.02 3.67 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.01 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.01 0.64 8.09 -2.39 -0.02 0.63 16 40 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.13 4.55 8.06 -2.92 -0.02 4.53 16 42 H 0.16 3.97 5.82 -2.91 -0.02 3.95 16 Total: -1.00 -68.27 355.27 0.47 -67.80 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.03 Total: 14.97 kcal Atomic # 6 Polarization: -61.44 SS G_CDS: 3.84 Total: -57.59 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.25 Total: -72.65 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -3.63 Total: -57.38 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 61.01 SS G_CDS: -1.55 Total: 59.46 kcal Total: -68.27 0.47 -67.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885020536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.925 kcal (2) G-P(sol) polarization free energy of solvation -68.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.67 seconds