Wall clock time and date at job start Wed Apr 1 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 102.99676 * 2 1 4 4 C 1.53003 * 115.55083 * 298.32673 * 3 2 1 5 5 N 1.46495 * 109.47338 * 269.67405 * 4 3 2 6 6 S 1.65600 * 120.00059 * 165.06879 * 5 4 3 7 7 O 1.42103 * 106.40372 * 311.46618 * 6 5 4 8 8 O 1.42100 * 106.40344 * 178.53865 * 6 5 4 9 9 C 1.76206 * 107.21629 * 65.00161 * 6 5 4 10 10 C 1.38237 * 120.00043 * 89.99973 * 9 6 5 11 11 C 1.38225 * 120.00383 * 180.02562 * 10 9 6 12 12 C 1.38244 * 119.99924 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99992 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47225 * 90.00169 * 13 12 11 15 15 H 1.07998 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00272 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99801 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46902 * 90.00314 * 18 16 14 20 20 H 1.48501 * 109.47193 * 210.00006 * 18 16 14 21 21 H 1.48497 * 109.47696 * 330.00396 * 18 16 14 22 22 C 1.38230 * 119.99614 * 0.25550 * 12 11 10 23 23 C 1.38236 * 120.00468 * 359.46834 * 22 12 11 24 24 C 1.53001 * 117.50133 * 84.00269 * 3 2 1 25 25 C 1.53003 * 117.49569 * 152.66363 * 3 2 1 26 26 H 1.09001 * 109.46820 * 177.36433 * 1 2 3 27 27 H 1.08995 * 109.47472 * 297.36838 * 1 2 3 28 28 H 1.09005 * 109.46849 * 57.36938 * 1 2 3 29 29 H 1.09001 * 109.46480 * 149.67574 * 4 3 2 30 30 H 1.08997 * 109.46982 * 29.68212 * 4 3 2 31 31 H 0.97004 * 119.99847 * 345.07475 * 5 4 3 32 32 H 1.08003 * 119.99705 * 359.97438 * 10 9 6 33 33 H 1.07999 * 120.00390 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47398 * 210.00258 * 13 12 11 35 35 H 1.09005 * 109.47526 * 330.00031 * 13 12 11 36 36 H 0.97003 * 119.99767 * 179.97438 * 17 16 14 37 37 H 1.07999 * 119.99778 * 179.72282 * 22 12 11 38 38 H 1.07999 * 120.00560 * 180.27616 * 23 22 12 39 39 H 1.08998 * 117.50206 * 215.00004 * 24 3 2 40 40 H 1.09004 * 117.49552 * 0.02562 * 24 3 2 41 41 H 1.08994 * 117.49983 * 359.96874 * 25 3 2 42 42 H 1.09001 * 117.50273 * 144.97413 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7322 2.5578 -1.2151 5 7 2.7636 2.5432 -2.2553 6 16 2.3842 2.9908 -3.8039 7 8 1.2016 2.2821 -4.1482 8 8 3.5885 2.9039 -4.5532 9 6 1.9469 4.6972 -3.7612 10 6 2.9185 5.6644 -3.9385 11 6 2.5756 7.0030 -3.9045 12 6 1.2610 7.3746 -3.6928 13 6 0.8872 8.8340 -3.6552 14 6 0.5302 9.2970 -5.0441 15 1 0.5704 8.6040 -5.8714 16 6 0.1523 10.6055 -5.2587 17 7 0.1038 11.4496 -4.2514 18 14 -0.2895 11.1797 -6.9805 19 1 -1.7435 10.9829 -7.2101 20 1 0.0436 12.6198 -7.1229 21 1 0.4798 10.3928 -7.9775 22 6 0.2904 6.4076 -3.5097 23 6 0.6323 5.0687 -3.5494 24 6 2.2427 2.4878 1.3497 25 6 3.5556 2.1847 0.6232 26 1 -0.3633 -1.0266 -0.0473 27 1 -0.3634 0.4724 0.9126 28 1 -0.3633 0.5542 -0.8655 29 1 1.5277 3.5872 -0.9205 30 1 0.8202 2.1025 -1.6011 31 1 3.6688 2.2713 -2.0370 32 1 3.9457 5.3741 -4.1027 33 1 3.3347 7.7586 -4.0426 34 1 0.0314 8.9730 -2.9946 35 1 1.7309 9.4158 -3.2839 36 1 -0.1617 12.3703 -4.4025 37 1 -0.7359 6.6979 -3.3399 38 1 -0.1268 4.3131 -3.4108 39 1 1.9073 3.5247 1.3721 40 1 2.0116 1.8994 2.2377 41 1 4.1875 1.3971 1.0337 42 1 4.0842 3.0219 0.1675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885149906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:59 Heat of formation + Delta-G solvation = -52.701888 kcal Electronic energy + Delta-G solvation = -24703.454151 eV Core-core repulsion = 21094.327458 eV Total energy + Delta-G solvation = -3609.126693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.24444 -39.05932 -38.33015 -36.98900 -35.60812 -35.04193 -33.32473 -31.96881 -29.84833 -29.25336 -27.65093 -25.60026 -23.74455 -23.43027 -22.48160 -22.09731 -20.54935 -19.09205 -18.65133 -18.51818 -17.74067 -17.07420 -16.86589 -16.47328 -16.02157 -15.90890 -15.80302 -15.23913 -15.15670 -14.64636 -14.46819 -14.42573 -14.17338 -14.01753 -13.90969 -13.41820 -13.39661 -13.35765 -13.23480 -13.17701 -12.96858 -12.68692 -12.66155 -12.41448 -12.16094 -12.04411 -11.83387 -11.67975 -11.48110 -11.35632 -10.86526 -10.65984 -10.43029 -9.96923 -9.96056 -8.63595 -8.27956 -6.40488 -0.66280 -0.07680 0.39176 0.74094 1.37793 1.38409 1.49619 1.57596 1.97659 2.34054 2.55583 2.67341 2.83158 3.04939 3.28365 3.54014 3.58883 3.86999 3.93175 3.97168 4.15550 4.25223 4.38039 4.39743 4.45948 4.47491 4.52583 4.69430 4.75157 4.79686 4.81955 4.90776 4.96919 4.99101 5.10108 5.21302 5.24589 5.25869 5.32919 5.66570 5.86032 5.91607 6.02449 6.09343 6.71452 7.28724 8.82083 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.002581 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.563706 B =10847.090631 C =11311.234008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.239 6.239 3 C -0.134 4.134 4 C 0.151 3.849 5 N -1.099 6.099 6 S 2.726 3.274 7 O -0.982 6.982 8 O -0.985 6.985 9 C -0.699 4.699 10 C -0.018 4.018 11 C -0.155 4.155 12 C -0.002 4.002 13 C 0.048 3.952 14 C -0.534 4.534 15 H 0.053 0.947 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.153 4.153 23 C -0.019 4.019 24 C -0.135 4.135 25 C -0.130 4.130 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.428 0.572 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -21.037 12.700 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.010 6.010 3 C -0.246 4.246 4 C 0.023 3.977 5 N -0.862 5.862 6 S 2.816 3.184 7 O -0.972 6.972 8 O -0.975 6.975 9 C -0.786 4.786 10 C -0.037 4.037 11 C -0.174 4.174 12 C -0.002 4.002 13 C 0.011 3.989 14 C -0.572 4.572 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.172 4.172 23 C -0.038 4.038 24 C -0.176 4.176 25 C -0.169 4.169 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.679 -22.272 11.949 25.704 hybrid contribution -0.959 2.415 -0.552 2.657 sum 3.721 -19.856 11.397 23.195 Atomic orbital electron populations 1.23523 0.92542 1.07282 1.05918 1.86649 1.09521 1.07300 1.97530 1.23617 1.09219 0.94164 0.97592 1.21107 0.89990 1.00480 0.86088 1.55196 1.20741 1.83329 1.26884 1.00726 0.72382 0.72938 0.72311 1.93534 1.50308 1.71036 1.82349 1.93542 1.47510 1.87110 1.69351 1.30735 1.01747 1.24653 1.21489 1.21013 0.99255 0.91830 0.91577 1.21304 0.96327 0.96704 1.03033 1.20816 0.93873 0.97101 0.88427 1.18261 0.96271 0.87641 0.96686 1.21294 1.46401 0.95707 0.93807 0.92862 1.25842 0.95050 0.96732 1.01227 1.70047 1.48303 1.05291 1.32772 0.85483 0.78849 0.77580 0.79398 1.19648 1.20326 1.19297 1.21300 0.99894 0.92764 1.03236 1.21028 0.94410 0.96483 0.91927 1.23485 1.00017 1.01718 0.92366 1.23117 0.89415 1.03373 1.01002 0.87166 0.89033 0.90248 0.89220 0.90085 0.73471 0.82746 0.85305 0.96732 0.96840 0.92366 0.85140 0.82654 0.86753 0.86790 0.87202 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.56 113.37 1.20 -0.31 16 2 S -0.24 -3.86 22.26 -56.49 -1.26 -5.12 16 3 C -0.13 -1.78 2.18 -10.79 -0.02 -1.81 16 4 C 0.15 2.33 6.24 86.38 0.54 2.87 16 5 N -1.10 -19.06 5.94 -187.50 -1.11 -20.18 16 6 S 2.73 68.06 5.74 -56.49 -0.32 67.73 16 7 O -0.98 -29.17 16.76 -128.00 -2.14 -31.32 16 8 O -0.98 -29.44 17.28 -128.00 -2.21 -31.66 16 9 C -0.70 -19.82 5.95 22.27 0.13 -19.68 16 10 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 11 C -0.15 -5.60 9.70 22.27 0.22 -5.39 16 12 C 0.00 -0.08 5.07 -19.87 -0.10 -0.18 16 13 C 0.05 2.43 5.10 29.10 0.15 2.58 16 14 C -0.53 -29.42 9.09 25.60 0.23 -29.19 16 15 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 16 C 0.01 0.59 5.46 84.66 0.46 1.05 16 17 N -0.92 -53.64 13.29 21.45 0.28 -53.35 16 18 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C -0.15 -5.45 9.70 22.27 0.22 -5.23 16 23 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 24 C -0.14 -1.31 9.94 30.62 0.30 -1.01 16 25 C -0.13 -1.34 9.33 30.62 0.29 -1.06 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.02 7.04 -2.39 -0.02 1.00 16 29 H 0.09 1.18 7.88 -2.39 -0.02 1.16 16 30 H 0.08 1.33 6.38 -2.39 -0.02 1.31 16 31 H 0.43 5.93 8.06 -96.74 -0.78 5.15 16 32 H 0.15 3.85 7.62 -2.91 -0.02 3.83 16 33 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 34 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.01 0.71 8.09 -2.38 -0.02 0.69 16 36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.16 3.70 7.62 -2.91 -0.02 3.68 16 39 H 0.11 0.96 8.03 -2.39 -0.02 0.94 16 40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -70.66 381.13 -0.46 -71.11 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.25 Total: 15.53 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 4.03 Total: -58.04 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -0.83 Total: -73.53 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -4.36 Total: -62.98 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 64.20 SS G_CDS: -1.58 Total: 62.61 kcal Total: -70.66 -0.46 -71.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885149906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.410 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds