Wall clock time and date at job start Tue Mar 31 2020 22:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.60070 * 2 1 4 4 C 1.55150 * 109.60401 * 239.67622 * 2 1 3 5 5 S 1.83990 * 100.90910 * 198.81288 * 4 2 1 6 6 C 1.83388 * 95.85099 * 35.35368 * 5 4 2 7 7 C 1.52944 * 109.45303 * 120.23335 * 2 1 3 8 8 H 1.09000 * 108.88913 * 29.14282 * 7 2 1 9 9 N 1.46504 * 108.88408 * 270.73319 * 7 2 1 10 10 S 1.65603 * 119.99908 * 144.99982 * 9 7 2 11 11 O 1.42095 * 106.40389 * 178.53866 * 10 9 7 12 12 O 1.42104 * 106.39916 * 311.46187 * 10 9 7 13 13 C 1.76199 * 107.21660 * 64.99931 * 10 9 7 14 14 C 1.38240 * 120.00313 * 269.72954 * 13 10 9 15 15 C 1.38232 * 120.00218 * 179.81068 * 14 13 10 16 16 C 1.38240 * 119.99940 * 0.41482 * 15 14 13 17 17 C 1.50692 * 120.00067 * 179.79132 * 16 15 14 18 18 C 1.50705 * 109.47177 * 270.02644 * 17 16 15 19 19 H 1.08002 * 119.99637 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00181 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99793 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47057 * 90.00172 * 22 20 18 24 24 H 1.48500 * 109.47275 * 209.99962 * 22 20 18 25 25 H 1.48500 * 109.47335 * 330.00138 * 22 20 18 26 26 C 1.38234 * 119.99529 * 359.81693 * 16 15 14 27 27 C 1.38231 * 120.00690 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.47051 * 179.30094 * 1 2 3 29 29 H 1.09002 * 109.47530 * 299.29841 * 1 2 3 30 30 H 1.09003 * 109.47241 * 59.30082 * 1 2 3 31 31 H 1.09005 * 111.13512 * 316.72682 * 4 2 1 32 32 H 1.08996 * 111.13099 * 80.90156 * 4 2 1 33 33 H 1.08996 * 110.34359 * 99.12489 * 6 5 4 34 34 H 1.08999 * 110.34076 * 221.27155 * 6 5 4 35 35 H 0.96997 * 120.00229 * 325.00523 * 9 7 2 36 36 H 1.08004 * 119.99404 * 359.97438 * 14 13 10 37 37 H 1.07997 * 119.99983 * 180.20943 * 15 14 13 38 38 H 1.09001 * 109.47074 * 30.02362 * 17 16 15 39 39 H 1.08994 * 109.47173 * 150.02560 * 17 16 15 40 40 H 0.97002 * 119.99966 * 180.02562 * 21 20 18 41 41 H 1.08005 * 119.99751 * 179.97438 * 26 16 15 42 42 H 1.08001 * 120.00139 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0506 -0.7379 -1.2616 5 16 3.7784 -1.1167 -0.7553 6 6 3.3942 -1.4137 1.0131 7 6 2.0394 -0.7261 1.2460 8 1 1.3076 -1.4787 1.5397 9 7 2.1805 0.2433 2.3353 10 16 1.8595 -0.2113 3.8950 11 8 2.1191 0.9263 4.7060 12 8 0.6044 -0.8770 3.8686 13 6 3.0569 -1.4243 4.3416 14 6 2.7988 -2.7644 4.1209 15 6 3.7397 -3.7158 4.4677 16 6 4.9353 -3.3278 5.0431 17 6 5.9591 -4.3653 5.4255 18 6 5.7131 -4.8156 6.8425 19 1 4.8971 -4.3923 7.4096 20 6 6.5302 -5.7670 7.4154 21 7 7.5241 -6.2819 6.7250 22 14 6.2256 -6.3245 9.1719 23 1 5.2963 -7.4828 9.1695 24 1 7.5131 -6.7241 9.7948 25 1 5.6252 -5.2098 9.9480 26 6 5.1914 -1.9882 5.2682 27 6 4.2522 -1.0364 4.9174 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3634 0.5029 0.8962 30 1 -0.3634 0.5247 -0.8837 31 1 1.4851 -1.6519 -1.4437 32 1 2.0309 -0.0855 -2.1345 33 1 3.3151 -2.4830 1.2093 34 1 4.1608 -0.9686 1.6473 35 1 2.4620 1.1514 2.1429 36 1 1.8630 -3.0677 3.6751 37 1 3.5394 -4.7624 4.2922 38 1 5.8789 -5.2199 4.7536 39 1 6.9579 -3.9356 5.3491 40 1 8.0988 -6.9515 7.1279 41 1 6.1253 -1.6851 5.7181 42 1 4.4522 0.0102 5.0937 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885184480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:40 Heat of formation + Delta-G solvation = -64.211109 kcal Electronic energy + Delta-G solvation = -25335.385944 eV Core-core repulsion = 21725.760174 eV Total energy + Delta-G solvation = -3609.625770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -38.91003 -38.46123 -37.18488 -35.87117 -33.74061 -33.47784 -31.61359 -30.65429 -29.85629 -27.53600 -27.46384 -23.94030 -23.73857 -22.42490 -21.04005 -20.84392 -19.52622 -18.00806 -17.50641 -16.92393 -16.47112 -16.44294 -15.64040 -15.15551 -14.97340 -14.65227 -14.41555 -14.38669 -13.96105 -13.77486 -13.35053 -13.17251 -12.91038 -12.83645 -12.49071 -12.36082 -12.21370 -12.12605 -12.05763 -11.96765 -11.75119 -11.52312 -11.47316 -11.27706 -11.02784 -10.94959 -10.61600 -10.52700 -10.33798 -9.86784 -9.75807 -9.64157 -8.65395 -8.56427 -8.43940 -7.95442 -6.19452 -4.24741 0.37851 1.24984 1.52877 1.73137 2.00389 2.92940 3.22663 3.29413 3.33501 3.64576 3.97727 4.06369 4.12415 4.35088 4.39219 4.43928 4.56025 4.75865 4.89177 5.03761 5.08814 5.13167 5.16468 5.19293 5.23371 5.37498 5.48047 5.59534 5.66939 5.71093 5.76178 5.85258 5.85940 6.18429 6.26296 6.44006 6.65320 6.78310 6.86164 7.24993 7.38217 7.55050 7.75373 8.10145 8.80006 9.40434 10.90546 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003053 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.259164 B = 9169.467897 C =10198.278299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.096 0.904 4 C -0.067 4.067 5 S -0.286 6.286 6 C -0.094 4.094 7 C 0.151 3.849 8 H 0.105 0.895 9 N -1.112 6.112 10 S 2.694 3.306 11 O -0.963 6.963 12 O -0.962 6.962 13 C -0.705 4.705 14 C -0.025 4.025 15 C -0.144 4.144 16 C 0.029 3.971 17 C 0.039 3.961 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.144 4.144 27 C -0.021 4.021 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.418 0.582 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 12.999 -15.894 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.114 0.886 4 C -0.216 4.216 5 S -0.060 6.060 6 C -0.244 4.244 7 C 0.041 3.959 8 H 0.122 0.878 9 N -0.870 5.870 10 S 2.787 3.213 11 O -0.953 6.953 12 O -0.952 6.952 13 C -0.795 4.795 14 C -0.045 4.045 15 C -0.163 4.163 16 C 0.029 3.971 17 C 0.002 3.998 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.163 4.163 27 C -0.040 4.040 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.424 12.973 -15.935 23.510 hybrid contribution -0.206 -0.542 1.530 1.637 sum -11.630 12.431 -14.404 22.300 Atomic orbital electron populations 1.21879 0.92915 1.02978 1.02770 1.22236 0.97530 1.00820 0.91282 0.88599 1.24429 0.93471 1.03469 1.00200 1.88044 1.14723 1.92644 1.10561 1.24699 1.00093 1.04940 0.94619 1.21415 0.95492 0.90728 0.88221 0.87758 1.55830 1.86502 1.20903 1.23756 1.01685 0.74100 0.73635 0.71849 1.93578 1.86119 1.49825 1.65796 1.93564 1.39465 1.76313 1.85877 1.30254 1.16004 1.11745 1.21462 1.20755 0.97949 0.91066 0.94697 1.21242 0.94077 0.99657 1.01328 1.21128 0.94889 0.95377 0.85709 1.18544 0.92166 0.91795 0.97283 1.20961 1.14807 1.22952 0.96929 0.92293 1.25002 0.94848 0.95995 0.98271 1.69944 1.17374 1.28437 1.37138 0.86478 0.77708 0.79122 0.84098 1.20430 1.21013 1.19695 1.21256 1.00183 0.92864 1.02025 1.20762 0.91038 0.99743 0.92500 0.91780 0.91547 0.91776 0.88605 0.87246 0.87958 0.86841 0.74667 0.85393 0.85321 0.94685 0.94700 0.92595 0.85325 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.00 37.16 0.33 -0.51 16 2 C -0.10 -0.62 2.75 -89.51 -0.25 -0.86 16 3 H 0.10 0.55 7.76 -51.93 -0.40 0.15 16 4 C -0.07 -0.43 6.86 38.30 0.26 -0.17 16 5 S -0.29 -2.82 23.23 -107.50 -2.50 -5.32 16 6 C -0.09 -0.89 6.84 37.52 0.26 -0.64 16 7 C 0.15 1.24 2.80 -67.59 -0.19 1.05 16 8 H 0.10 0.87 7.08 -51.93 -0.37 0.50 16 9 N -1.11 -9.71 5.28 -4.60 -0.02 -9.73 16 10 S 2.69 34.19 5.72 -107.50 -0.61 33.57 16 11 O -0.96 -14.69 17.28 -57.17 -0.99 -15.68 16 12 O -0.96 -14.23 16.58 -57.17 -0.95 -15.18 16 13 C -0.70 -10.24 5.66 -39.58 -0.22 -10.47 16 14 C -0.03 -0.38 9.52 -39.58 -0.38 -0.75 16 15 C -0.14 -2.53 9.70 -39.58 -0.38 -2.91 16 16 C 0.03 0.58 5.07 -104.63 -0.53 0.05 16 17 C 0.04 0.93 5.10 -29.04 -0.15 0.79 16 18 C -0.52 -13.90 9.09 -34.44 -0.31 -14.21 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 22 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.14 -2.58 9.70 -39.59 -0.38 -2.97 16 27 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 28 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.15 7.89 -51.93 -0.41 0.74 16 35 H 0.42 2.77 8.56 -34.47 -0.30 2.47 16 36 H 0.13 1.62 7.61 -52.48 -0.40 1.22 16 37 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -32.57 372.97 -12.19 -44.75 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.03 Total: 1.34 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -2.42 Total: -30.73 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.71 Total: -34.35 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.94 Total: -30.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 31.36 SS G_CDS: -3.11 Total: 28.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.57 -12.19 -44.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885184480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.456 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds