Wall clock time and date at job start Tue Mar 31 2020 22:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.44932 * 2 1 4 4 C 1.54994 * 109.47143 * 120.21334 * 2 1 3 5 5 S 1.83989 * 100.82208 * 161.51070 * 4 2 1 6 6 C 1.83397 * 95.85065 * 324.57895 * 5 4 2 7 7 C 1.52945 * 109.60343 * 239.77338 * 2 1 3 8 8 H 1.09003 * 108.88731 * 330.61745 * 7 2 1 9 9 N 1.46497 * 108.88823 * 89.17287 * 7 2 1 10 10 S 1.65599 * 119.99915 * 217.12227 * 9 7 2 11 11 O 1.42105 * 106.40077 * 311.46178 * 10 9 7 12 12 O 1.42104 * 106.40241 * 178.54407 * 10 9 7 13 13 C 1.76200 * 107.21850 * 65.00480 * 10 9 7 14 14 C 1.38230 * 120.00186 * 89.99748 * 13 10 9 15 15 C 1.38234 * 119.99825 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00204 * 359.95801 * 15 14 13 17 17 C 1.50701 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.46848 * 89.99989 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 C 1.38237 * 119.99973 * 0.27711 * 16 15 14 27 27 C 1.38234 * 119.99712 * 359.53576 * 26 16 15 28 28 H 1.09000 * 109.46837 * 180.22740 * 1 2 3 29 29 H 1.08998 * 109.46886 * 300.22773 * 1 2 3 30 30 H 1.08998 * 109.46515 * 60.23018 * 1 2 3 31 31 H 1.09002 * 111.23072 * 43.60306 * 4 2 1 32 32 H 1.08997 * 111.14921 * 279.37881 * 4 2 1 33 33 H 1.09001 * 110.34486 * 260.87766 * 6 5 4 34 34 H 1.08996 * 110.43291 * 138.66472 * 6 5 4 35 35 H 0.97006 * 119.99744 * 37.12762 * 9 7 2 36 36 H 1.08003 * 119.99876 * 0.02562 * 14 13 10 37 37 H 1.08002 * 119.99953 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47060 * 330.00024 * 17 16 15 39 39 H 1.08998 * 109.47176 * 210.00671 * 17 16 15 40 40 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.99912 * 179.72830 * 26 16 15 42 42 H 1.08004 * 119.99785 * 180.21353 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0467 -0.7354 1.2628 5 16 3.7777 -1.1070 0.7622 6 6 3.4003 -1.4069 -1.0073 7 6 2.0432 -0.7253 -1.2449 8 1 1.3150 -1.4817 -1.5379 9 7 2.1835 0.2439 -2.3344 10 16 1.8155 -0.1973 -3.8876 11 8 2.4765 -1.4335 -4.1208 12 8 2.0191 0.9567 -4.6915 13 6 0.0878 -0.5397 -3.9371 14 6 -0.8090 0.4707 -4.2298 15 6 -2.1644 0.2022 -4.2681 16 6 -2.6231 -1.0770 -4.0146 17 6 -4.1008 -1.3697 -4.0558 18 6 -4.4934 -1.7771 -5.4525 19 1 -3.7474 -1.8203 -6.2323 20 6 -5.8050 -2.0948 -5.7349 21 7 -6.7135 -2.0418 -4.7856 22 14 -6.2916 -2.6005 -7.4660 23 1 -5.5355 -3.8174 -7.8573 24 1 -5.9782 -1.4981 -8.4104 25 1 -7.7478 -2.8888 -7.5067 26 6 -1.7266 -2.0864 -3.7171 27 6 -0.3709 -1.8187 -3.6826 28 1 -0.3633 -1.0277 0.0041 29 1 -0.3633 0.5174 0.8879 30 1 -0.3632 0.5103 -0.8921 31 1 1.4846 -1.6516 1.4437 32 1 2.0216 -0.0830 2.1356 33 1 3.3264 -2.4766 -1.2030 34 1 4.1655 -0.9584 -1.6409 35 1 2.4920 1.1441 -2.1460 36 1 -0.4506 1.4700 -4.4285 37 1 -2.8651 0.9917 -4.4964 38 1 -4.6562 -0.4770 -3.7681 39 1 -4.3303 -2.1792 -3.3630 40 1 -6.4608 -1.7795 -3.8865 41 1 -2.0853 -3.0848 -3.5148 42 1 0.3297 -2.6081 -3.4536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885184482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:17 Heat of formation + Delta-G solvation = -68.246117 kcal Electronic energy + Delta-G solvation = -25436.228754 eV Core-core repulsion = 21826.428013 eV Total energy + Delta-G solvation = -3609.800741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.02220 -38.50166 -37.22951 -35.91046 -34.07682 -33.51239 -31.60844 -30.75372 -29.92540 -27.52732 -27.17631 -23.95517 -23.61969 -22.54162 -21.27571 -20.92424 -19.58303 -17.99810 -17.46706 -17.25696 -16.95818 -16.48294 -15.57871 -15.15636 -14.94152 -14.75821 -14.45385 -14.13179 -13.89865 -13.79374 -13.40367 -13.32693 -13.26559 -12.85440 -12.52950 -12.40458 -12.31346 -12.15225 -12.08968 -12.03037 -11.85274 -11.70654 -11.48608 -11.30039 -10.98341 -10.93420 -10.62808 -10.46225 -10.28824 -10.10212 -9.81903 -9.33252 -8.75608 -8.54409 -8.38618 -8.04694 -6.56467 -4.29681 0.31745 1.15108 1.46042 1.62161 1.93210 2.86733 3.35600 3.36037 3.55194 3.59668 3.94106 3.95371 4.14243 4.30982 4.41488 4.43330 4.50351 4.70872 4.82881 5.02970 5.05209 5.07338 5.09127 5.20867 5.22594 5.38935 5.46458 5.51733 5.56753 5.65008 5.73202 5.75710 5.90890 6.06433 6.14557 6.33224 6.59772 6.63999 6.67514 6.90241 7.21393 7.29629 7.86957 8.23184 8.63928 9.41473 10.82971 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002927 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.420272 B = 9562.324030 C =10373.714518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.064 4.064 5 S -0.296 6.296 6 C -0.084 4.084 7 C 0.155 3.845 8 H 0.098 0.902 9 N -1.112 6.112 10 S 2.693 3.307 11 O -0.959 6.959 12 O -0.962 6.962 13 C -0.703 4.703 14 C -0.019 4.019 15 C -0.144 4.144 16 C 0.033 3.967 17 C 0.027 3.973 18 C -0.599 4.599 19 H 0.053 0.947 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 1.071 2.929 23 H -0.286 1.286 24 H -0.286 1.286 25 H -0.280 1.280 26 C -0.144 4.144 27 C -0.025 4.025 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 4.613 11.891 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 H 0.115 0.885 4 C -0.212 4.212 5 S -0.069 6.069 6 C -0.234 4.234 7 C 0.045 3.955 8 H 0.116 0.884 9 N -0.870 5.870 10 S 2.786 3.214 11 O -0.949 6.949 12 O -0.952 6.952 13 C -0.792 4.792 14 C -0.039 4.039 15 C -0.163 4.163 16 C 0.033 3.967 17 C -0.010 4.010 18 C -0.637 4.637 19 H 0.071 0.929 20 C -0.184 4.184 21 N -0.541 5.541 22 Si 0.898 3.102 23 H -0.212 1.212 24 H -0.212 1.212 25 H -0.206 1.206 26 C -0.163 4.163 27 C -0.045 4.045 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.146 0.854 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.644 3.861 10.840 21.065 hybrid contribution -0.334 0.775 0.573 1.020 sum 17.311 4.637 11.413 21.247 Atomic orbital electron populations 1.21893 0.92618 1.03099 1.03117 1.22256 0.97734 1.00841 0.91279 0.88533 1.24410 0.92853 1.03631 1.00330 1.87941 1.15343 1.92824 1.10828 1.24585 0.99893 1.04931 0.94005 1.21341 0.95561 0.90380 0.88176 0.88416 1.55858 1.83201 1.22729 1.25165 1.01772 0.74197 0.73539 0.71893 1.93579 1.72768 1.45128 1.83445 1.93582 1.85870 1.50384 1.65391 1.30306 1.24258 1.01909 1.22773 1.20761 0.93213 0.97365 0.92522 1.21224 0.94969 0.97607 1.02519 1.20871 0.98596 0.91966 0.85261 1.18653 0.86085 0.97342 0.98916 1.21823 0.96721 1.51267 0.93842 0.92899 1.25919 0.92549 0.94259 1.05648 1.70810 1.36080 1.44052 1.03143 0.83510 0.76360 0.76630 0.73718 1.21217 1.21221 1.20555 1.21213 0.92408 0.99887 1.02763 1.20774 0.96389 0.93855 0.93451 0.91812 0.91622 0.91386 0.88518 0.87164 0.87881 0.87112 0.74606 0.85136 0.85388 0.95655 0.95654 0.92031 0.85395 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.01 37.16 0.33 -0.73 16 2 C -0.10 -0.67 2.73 -89.59 -0.24 -0.91 16 3 H 0.10 0.58 7.79 -51.93 -0.40 0.18 16 4 C -0.06 -0.41 6.85 38.21 0.26 -0.15 16 5 S -0.30 -2.66 23.22 -107.50 -2.50 -5.16 16 6 C -0.08 -0.73 7.14 37.53 0.27 -0.47 16 7 C 0.15 1.26 2.67 -67.59 -0.18 1.08 16 8 H 0.10 0.81 6.79 -51.93 -0.35 0.45 16 9 N -1.11 -9.58 5.26 -4.60 -0.02 -9.61 16 10 S 2.69 33.90 5.63 -107.50 -0.61 33.30 16 11 O -0.96 -14.14 17.04 -57.17 -0.97 -15.12 16 12 O -0.96 -14.58 17.28 -57.17 -0.99 -15.57 16 13 C -0.70 -10.08 5.80 -39.58 -0.23 -10.31 16 14 C -0.02 -0.29 9.52 -39.59 -0.38 -0.67 16 15 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 16 C 0.03 0.66 5.07 -104.62 -0.53 0.13 16 17 C 0.03 0.63 4.42 -29.04 -0.13 0.50 16 18 C -0.60 -16.11 9.09 -34.44 -0.31 -16.42 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.02 0.57 5.46 -17.82 -0.10 0.48 16 21 N -0.91 -26.23 13.65 55.43 0.76 -25.48 16 22 Si 1.07 24.36 29.90 -169.99 -5.08 19.28 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.14 -2.50 9.70 -39.58 -0.38 -2.89 16 27 C -0.03 -0.37 8.87 -39.58 -0.35 -0.73 16 28 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.98 7.89 -51.93 -0.41 0.57 16 35 H 0.42 2.72 8.60 -34.47 -0.30 2.43 16 36 H 0.13 1.70 7.62 -52.48 -0.40 1.30 16 37 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 39 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 40 H 0.27 7.67 7.22 -40.82 -0.29 7.37 16 41 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.13 1.62 7.62 -52.48 -0.40 1.22 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -32.95 371.41 -12.14 -45.09 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.96 Total: 1.68 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: -2.36 Total: -34.01 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.73 Total: -35.08 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.96 Total: -30.69 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.28 kcal Atomic # 16 Polarization: 31.24 SS G_CDS: -3.10 Total: 28.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.95 -12.14 -45.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885184482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.161 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds