Wall clock time and date at job start Wed Apr 1 2020 00:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 113.99927 * 2 1 4 4 C 1.50702 * 108.82935 * 65.85779 * 3 2 1 5 5 O 1.21296 * 119.99932 * 211.97730 * 4 3 2 6 6 N 1.34785 * 119.99901 * 31.97082 * 4 3 2 7 7 C 1.40089 * 119.99868 * 182.85354 * 6 4 3 8 8 C 1.38708 * 120.07429 * 332.90080 * 7 6 4 9 9 C 1.38186 * 120.01952 * 180.02562 * 8 7 6 10 10 C 1.38559 * 120.17395 * 359.97438 * 9 8 7 11 11 F 1.35103 * 119.91840 * 180.02562 * 10 9 8 12 12 C 1.38338 * 120.15297 * 0.02562 * 10 9 8 13 13 C 1.38734 * 119.97838 * 0.02562 * 12 10 9 14 14 O 1.35777 * 120.08547 * 179.97438 * 13 12 10 15 15 C 1.34805 * 117.00128 * 2.72213 * 14 13 12 16 16 H 1.08001 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.38637 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31580 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00288 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47084 * 60.00354 * 19 17 15 21 21 H 1.48500 * 109.47480 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47537 * 300.00186 * 19 17 15 23 23 C 1.52330 * 108.86775 * 184.38659 * 3 2 1 24 24 C 1.54256 * 112.58429 * 120.67508 * 23 3 2 25 25 S 1.83958 * 102.58311 * 24.53024 * 24 23 3 26 26 C 1.54262 * 108.75210 * 307.39446 * 3 2 1 27 27 H 1.08994 * 109.46962 * 304.49010 * 1 2 3 28 28 H 1.09001 * 109.46841 * 64.49553 * 1 2 3 29 29 H 1.08996 * 109.46951 * 184.48908 * 1 2 3 30 30 H 0.96999 * 119.99989 * 2.85508 * 6 4 3 31 31 H 1.07999 * 119.99128 * 359.73981 * 8 7 6 32 32 H 1.08001 * 119.91358 * 179.97438 * 9 8 7 33 33 H 1.08003 * 120.01131 * 180.02562 * 12 10 9 34 34 H 0.97003 * 119.99469 * 179.97438 * 18 17 15 35 35 H 1.08995 * 108.86879 * 241.49685 * 23 3 2 36 36 H 1.08997 * 108.86769 * 359.85639 * 23 3 2 37 37 H 1.08998 * 110.78937 * 142.80377 * 24 23 3 38 38 H 1.08999 * 110.78941 * 266.06670 * 24 23 3 39 39 H 1.08996 * 110.78734 * 333.00159 * 26 3 2 40 40 H 1.08998 * 110.78616 * 96.45534 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6752 1.9871 1.3016 5 8 1.5270 3.1905 1.3355 6 7 1.5400 1.2595 2.4281 7 6 1.1698 1.8850 3.6257 8 6 1.4740 3.2221 3.8345 9 6 1.1088 3.8378 5.0165 10 6 0.4381 3.1230 5.9958 11 9 0.0831 3.7302 7.1493 12 6 0.1312 1.7891 5.7951 13 6 0.4957 1.1644 4.6113 14 8 0.1960 -0.1449 4.4122 15 6 -0.5068 -0.7659 5.3806 16 1 -0.8054 -0.2219 6.2645 17 6 -0.8462 -2.1029 5.2418 18 7 -0.4820 -2.7658 4.1651 19 14 -1.8206 -2.9633 6.5832 20 1 -3.1260 -2.2787 6.7634 21 1 -2.0535 -4.3779 6.1961 22 1 -1.0576 -2.9173 7.8564 23 6 3.5236 1.1710 -0.1102 24 6 4.0922 1.8802 -1.3565 25 16 2.8174 3.1595 -1.7062 26 6 1.4016 2.1194 -1.1605 27 1 -0.3633 0.5819 0.8470 28 1 -0.3633 0.4425 -0.9275 29 1 -0.3633 -1.0245 0.0804 30 1 1.6989 0.3028 2.4095 31 1 2.0004 3.7809 3.0749 32 1 1.3469 4.8789 5.1774 33 1 -0.3921 1.2342 6.5598 34 1 -0.7192 -3.7014 4.0682 35 1 3.9816 1.6017 0.7801 36 1 3.7809 0.1129 -0.1587 37 1 5.0535 2.3429 -1.1335 38 1 4.1841 1.1836 -2.1899 39 1 1.0731 1.4606 -1.9644 40 1 0.5786 2.7406 -0.8073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889511735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:46 Heat of formation + Delta-G solvation = -109.507786 kcal Electronic energy + Delta-G solvation = -28177.461440 eV Core-core repulsion = 23999.658282 eV Total energy + Delta-G solvation = -4177.803158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.29684 -40.86169 -39.19988 -37.76248 -36.33839 -34.49257 -34.02106 -32.46405 -29.73100 -29.40379 -28.59669 -27.32522 -25.60726 -24.95119 -22.96906 -22.15051 -21.21148 -19.62881 -18.42588 -18.26525 -17.72193 -17.14362 -16.83192 -15.76139 -15.44309 -15.32399 -15.27653 -14.98745 -14.86755 -14.50409 -14.33439 -14.24742 -13.77404 -13.68618 -13.60879 -13.36118 -13.12381 -12.62668 -12.37817 -12.25168 -12.18687 -11.94811 -11.71981 -11.57354 -11.43381 -11.35493 -11.01855 -10.80400 -10.61103 -10.42437 -10.15123 -9.86590 -9.72556 -9.13792 -9.00147 -7.95296 -7.76722 -7.16213 -6.65324 -4.23091 1.63687 1.69904 2.05753 2.07697 2.74747 3.04038 3.04359 3.06950 3.12830 3.54273 3.80134 4.08993 4.27482 4.56635 4.64342 4.76338 4.82157 4.83899 4.90677 5.05338 5.15398 5.28895 5.32709 5.48069 5.48766 5.53750 5.57976 5.69438 5.73506 5.92257 5.96542 6.14044 6.49002 6.65147 6.83251 6.85944 6.89725 6.97427 7.13024 7.58271 7.75991 7.80885 8.34850 8.80002 9.39335 10.51046 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.004123 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.179754 B = 6789.559146 C = 8804.147525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.364 6.364 3 C 0.107 3.893 4 C 0.488 3.512 5 O -0.515 6.515 6 N -0.635 5.635 7 C 0.054 3.946 8 C -0.059 4.059 9 C -0.229 4.229 10 C 0.130 3.870 11 F -0.151 7.151 12 C -0.260 4.260 13 C 0.157 3.843 14 O -0.167 6.167 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.856 5.856 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.116 4.116 24 C -0.067 4.067 25 S -0.264 6.264 26 C -0.082 4.082 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.421 0.579 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.273 0.727 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 4.286 -8.889 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.283 6.283 3 C 0.062 3.938 4 C 0.273 3.727 5 O -0.391 6.391 6 N -0.279 5.279 7 C -0.040 4.040 8 C -0.079 4.079 9 C -0.250 4.250 10 C 0.110 3.890 11 F -0.130 7.130 12 C -0.281 4.281 13 C 0.101 3.899 14 O -0.069 6.069 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.161 4.161 18 N -0.490 5.490 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.193 1.193 23 C -0.155 4.155 24 C -0.215 4.215 25 S -0.038 6.038 26 C -0.231 4.231 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.259 0.741 31 H 0.169 0.831 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.536 5.675 -9.593 12.445 hybrid contribution -0.936 -1.782 1.500 2.511 sum 4.600 3.893 -8.093 10.090 Atomic orbital electron populations 1.22991 0.79581 1.04518 1.00480 1.88079 1.21115 1.24452 1.94608 1.22387 0.94936 0.84151 0.92348 1.20982 0.78193 0.87973 0.85574 1.90662 1.49266 1.13673 1.85518 1.43173 1.65487 1.12870 1.06360 1.16954 1.07105 0.93080 0.86858 1.20928 0.97957 0.92495 0.96532 1.20524 1.08888 1.00546 0.94993 1.17493 0.98399 0.90951 0.82108 1.91415 1.90238 1.83526 1.47808 1.20841 1.12323 0.94187 1.00702 1.18723 0.93050 0.86090 0.92012 1.83904 1.63233 1.16087 1.43709 1.21300 1.32468 0.93836 0.99370 0.88854 1.25266 0.97365 0.95345 0.98085 1.70007 1.42636 1.10309 1.26024 0.85760 0.79632 0.78396 0.79632 1.19377 1.20139 1.19336 1.21848 0.90295 1.04095 0.99247 1.24127 0.99955 0.97793 0.99606 1.88046 1.03984 1.25088 1.86661 1.24688 0.99735 0.99631 0.99066 0.92877 0.93645 0.88071 0.74113 0.83080 0.85897 0.83907 0.91723 0.89100 0.87743 0.87117 0.88660 0.87590 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 101.05 1.03 1.31 16 2 O -0.36 -5.06 9.31 -35.23 -0.33 -5.39 16 3 C 0.11 1.42 0.93 -91.45 -0.08 1.33 16 4 C 0.49 8.00 4.94 -10.98 -0.05 7.94 16 5 O -0.51 -9.44 12.94 5.54 0.07 -9.37 16 6 N -0.63 -11.45 4.66 -9.72 -0.05 -11.49 16 7 C 0.05 1.10 6.45 -83.45 -0.54 0.56 16 8 C -0.06 -1.11 8.75 -39.43 -0.35 -1.46 16 9 C -0.23 -4.21 10.02 -39.48 -0.40 -4.61 16 10 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 11 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 12 C -0.26 -5.56 9.14 -39.36 -0.36 -5.92 16 13 C 0.16 3.54 6.67 -38.94 -0.26 3.28 16 14 O -0.17 -4.21 9.20 0.04 0.00 -4.21 16 15 C -0.39 -10.10 9.49 30.88 0.29 -9.81 16 16 H 0.09 2.26 5.19 -52.49 -0.27 1.99 16 17 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 18 N -0.86 -22.61 13.67 55.48 0.76 -21.85 16 19 Si 0.94 19.21 29.55 -169.99 -5.02 14.19 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 23 C -0.12 -1.27 5.80 -26.42 -0.15 -1.43 16 24 C -0.07 -0.63 7.46 37.81 0.28 -0.34 16 25 S -0.26 -3.30 23.23 -107.50 -2.50 -5.80 16 26 C -0.08 -1.02 4.91 37.82 0.19 -0.83 16 27 H 0.05 0.84 6.86 -51.93 -0.36 0.48 16 28 H 0.05 0.50 6.68 -51.93 -0.35 0.15 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.42 7.72 7.75 -40.82 -0.32 7.41 16 31 H 0.15 2.79 5.68 -52.49 -0.30 2.49 16 32 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.14 3.05 5.62 -52.48 -0.30 2.76 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.09 1.03 7.51 -51.93 -0.39 0.64 16 36 H 0.10 1.03 7.83 -51.93 -0.41 0.63 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.12 7.33 -51.93 -0.38 0.74 16 40 H 0.12 1.59 7.34 -51.93 -0.38 1.21 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -28.34 347.29 -6.84 -35.18 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.27 Total: 13.00 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.78 Total: -6.66 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.71 Total: -33.35 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.26 Total: -18.97 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.50 Total: -5.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.34 -6.84 -35.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889511735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.328 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds