Wall clock time and date at job start Tue Mar 31 2020 23:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47001 * 240.00180 * 2 1 3 5 5 C 1.53004 * 109.46750 * 174.99968 * 4 2 1 6 6 S 1.81402 * 109.47137 * 180.02562 * 5 4 2 7 7 C 1.81396 * 103.00274 * 179.97438 * 6 5 4 8 8 O 1.42104 * 109.46825 * 296.39081 * 6 5 4 9 9 N 1.46500 * 109.46957 * 120.00122 * 2 1 3 10 10 C 1.34776 * 120.00318 * 274.99853 * 9 2 1 11 11 O 1.21616 * 119.99582 * 0.02562 * 10 9 2 12 12 C 1.47421 * 120.00468 * 180.02562 * 10 9 2 13 13 C 1.39679 * 120.21147 * 0.02562 * 12 10 9 14 14 C 1.37804 * 119.93648 * 179.97438 * 13 12 10 15 15 C 1.38662 * 120.38390 * 0.02562 * 14 13 12 16 16 C 1.37910 * 120.43745 * 359.97438 * 15 14 13 17 17 C 1.39111 * 120.04755 * 359.74760 * 16 15 14 18 18 S 1.76201 * 120.19204 * 180.25434 * 17 16 15 19 19 C 1.76205 * 99.99563 * 6.86553 * 18 17 16 20 20 H 1.07995 * 120.00323 * 5.65618 * 19 18 17 21 21 C 1.38809 * 119.99574 * 185.65932 * 19 18 17 22 22 N 1.31556 * 119.99661 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00541 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46789 * 89.99897 * 23 21 19 25 25 H 1.48493 * 109.47282 * 209.99941 * 23 21 19 26 26 H 1.48505 * 109.46741 * 330.00229 * 23 21 19 27 27 H 1.09000 * 109.47145 * 299.99847 * 1 2 3 28 28 H 1.09000 * 109.46982 * 60.00390 * 1 2 3 29 29 H 1.08996 * 109.46645 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47211 * 55.00479 * 4 2 1 31 31 H 1.09000 * 109.47143 * 294.99810 * 4 2 1 32 32 H 1.09001 * 109.47461 * 59.99861 * 5 4 2 33 33 H 1.09000 * 109.47169 * 299.99827 * 5 4 2 34 34 H 1.08999 * 109.47323 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47064 * 300.00226 * 7 6 5 36 36 H 1.09005 * 109.46554 * 59.99956 * 7 6 5 37 37 H 0.97001 * 119.99821 * 95.00807 * 9 2 1 38 38 H 1.07997 * 120.03573 * 359.97438 * 13 12 10 39 39 H 1.08005 * 119.81231 * 179.97438 * 14 13 12 40 40 H 1.07999 * 119.78219 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.97755 * 180.02562 * 16 15 14 42 42 H 0.96998 * 120.00190 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 16 4.1696 -1.4676 -2.7952 7 6 5.9656 -1.2325 -2.6975 8 8 3.8667 -2.8528 -2.6999 9 7 2.0183 -0.6906 1.1962 10 6 2.1471 -0.0184 2.3572 11 8 1.8574 1.1615 2.4119 12 6 2.6390 -0.7132 3.5607 13 6 2.9734 -2.0681 3.5028 14 6 3.4332 -2.7118 4.6311 15 6 3.5660 -2.0224 5.8269 16 6 3.2403 -0.6844 5.9018 17 6 2.7799 -0.0153 4.7724 18 16 2.3691 1.6958 4.8621 19 6 2.9188 2.0570 6.4968 20 1 3.4421 1.3053 7.0690 21 6 2.6790 3.3077 7.0491 22 7 3.0890 3.5772 8.2698 23 14 1.7744 4.6081 6.0593 24 1 0.3149 4.4932 6.3081 25 1 2.2418 5.9566 6.4695 26 1 2.0473 4.4083 4.6133 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6055 -0.2616 -2.1370 31 1 1.7517 -1.7715 -1.2057 32 1 3.9996 -1.0727 -0.4260 33 1 3.8532 0.4370 -1.3573 34 1 6.4420 -1.7134 -3.5519 35 1 6.1935 -0.1667 -2.7062 36 1 6.3404 -1.6767 -1.7754 37 1 2.2491 -1.6318 1.1525 38 1 2.8718 -2.6107 2.5746 39 1 3.6908 -3.7597 4.5841 40 1 3.9268 -2.5366 6.7053 41 1 3.3470 -0.1546 6.8368 42 1 2.9212 4.4510 8.6559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900891211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:22 Heat of formation + Delta-G solvation = -51.839156 kcal Electronic energy + Delta-G solvation = -24632.328117 eV Core-core repulsion = 21023.238835 eV Total energy + Delta-G solvation = -3609.089282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79966 -37.83844 -36.26268 -35.93489 -32.73358 -32.55558 -30.83548 -30.40115 -29.56597 -29.17884 -25.92313 -24.46731 -23.41941 -22.11896 -21.06164 -20.20908 -18.34125 -17.76242 -17.18036 -16.39319 -15.94462 -15.51467 -15.33285 -15.13273 -14.96060 -14.67015 -14.39374 -14.14369 -13.81302 -13.68848 -13.50836 -13.26548 -13.13675 -12.84332 -12.65847 -12.31433 -12.11297 -12.03572 -11.91115 -11.72830 -11.53629 -11.34943 -11.20319 -11.02517 -10.90412 -10.52235 -10.31901 -9.80377 -9.71634 -9.47704 -8.91019 -8.85596 -8.56011 -8.44173 -8.23984 -6.81945 -6.49625 -4.20875 1.21004 1.39753 1.89287 2.29779 2.84887 3.18969 3.34374 3.38306 3.39182 3.46585 3.48537 4.13328 4.36316 4.51627 4.61961 4.64530 4.71339 4.79455 4.90362 4.93430 5.20414 5.21996 5.27963 5.37083 5.38287 5.50616 5.51756 5.58241 5.66825 5.77255 5.82071 6.01984 6.07662 6.22589 6.24819 6.47917 6.68574 6.74912 6.94160 7.03745 7.43319 7.73713 7.78729 8.32790 8.65262 8.94416 10.57683 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.003034 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.217875 B = 9226.200276 C =10086.082042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.092 0.908 4 C -0.106 4.106 5 C -0.448 4.448 6 S 1.238 4.762 7 C -0.489 4.489 8 O -0.855 6.855 9 N -0.733 5.733 10 C 0.556 3.444 11 O -0.512 6.512 12 C -0.174 4.174 13 C -0.066 4.066 14 C -0.177 4.177 15 C -0.076 4.076 16 C -0.145 4.145 17 C -0.030 4.030 18 S 0.087 5.913 19 C -0.580 4.580 20 H 0.105 0.895 21 C 0.103 3.897 22 N -0.863 5.863 23 Si 0.850 3.150 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.234 1.234 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.394 0.606 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -8.113 -22.490 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.110 0.890 4 C -0.145 4.145 5 C -0.585 4.585 6 S 1.437 4.563 7 C -0.647 4.647 8 O -0.850 6.850 9 N -0.387 5.387 10 C 0.345 3.655 11 O -0.389 6.389 12 C -0.188 4.188 13 C -0.087 4.087 14 C -0.201 4.201 15 C -0.098 4.098 16 C -0.169 4.169 17 C -0.149 4.149 18 S 0.348 5.652 19 C -0.726 4.726 20 H 0.123 0.877 21 C -0.108 4.108 22 N -0.497 5.497 23 Si 0.674 3.326 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.158 1.158 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.228 0.772 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.815 -6.486 -23.708 24.593 hybrid contribution 1.416 -1.646 2.839 3.574 sum 0.602 -8.132 -20.869 22.406 Atomic orbital electron populations 1.22200 0.95309 1.02038 1.02794 1.20871 0.93831 0.97656 0.83386 0.88994 1.21500 0.92221 1.01935 0.98836 1.27698 1.03100 1.11200 1.16491 1.70358 0.87692 0.94553 1.03717 1.27628 1.21352 1.08490 1.07239 1.93134 1.78648 1.30757 1.82484 1.45964 1.69422 1.13701 1.09599 1.18261 0.77863 0.86558 0.82848 1.90752 1.49153 1.15143 1.83896 1.19202 1.12179 0.94400 0.93025 1.20905 0.97155 0.92892 0.97712 1.20728 1.06440 0.99499 0.93428 1.21145 0.97175 0.94264 0.97236 1.21585 1.01595 0.94548 0.99210 1.22526 0.97666 1.00614 0.94083 1.84091 1.67667 0.97703 1.15763 1.23535 1.43426 1.04003 1.01662 0.87709 1.24809 0.93967 0.97671 0.94346 1.69910 1.43073 1.23075 1.13598 0.86865 0.81205 0.81587 0.82927 1.18741 1.19377 1.15794 0.91547 0.91734 0.92678 0.89224 0.90968 0.89239 0.86139 0.87744 0.86868 0.90056 0.77162 0.87126 0.86827 0.86590 0.83591 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.15 1.62 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.11 -0.81 4.76 -26.73 -0.13 -0.93 16 5 C -0.45 -3.18 5.81 37.16 0.22 -2.96 16 6 S 1.24 7.24 13.80 -107.50 -1.48 5.75 16 7 C -0.49 -2.74 10.74 101.05 1.09 -1.65 16 8 O -0.85 -11.04 18.14 -35.23 -0.64 -11.68 16 9 N -0.73 -9.77 4.48 -54.88 -0.25 -10.01 16 10 C 0.56 10.11 7.71 -12.52 -0.10 10.02 16 11 O -0.51 -11.03 13.43 5.26 0.07 -10.96 16 12 C -0.17 -3.34 5.89 -104.76 -0.62 -3.95 16 13 C -0.07 -1.05 9.53 -39.20 -0.37 -1.42 16 14 C -0.18 -2.74 10.02 -39.58 -0.40 -3.14 16 15 C -0.08 -1.32 10.03 -39.54 -0.40 -1.71 16 16 C -0.14 -3.06 9.22 -39.38 -0.36 -3.42 16 17 C -0.03 -0.67 6.14 -38.39 -0.24 -0.91 16 18 S 0.09 2.20 16.53 -107.50 -1.78 0.43 16 19 C -0.58 -16.31 9.54 30.94 0.30 -16.02 16 20 H 0.11 3.04 5.21 -52.49 -0.27 2.77 16 21 C 0.10 2.91 5.50 -17.46 -0.10 2.82 16 22 N -0.86 -25.17 13.96 55.49 0.77 -24.39 16 23 Si 0.85 20.82 27.74 -169.99 -4.71 16.11 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.23 -5.72 6.74 56.52 0.38 -5.34 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.84 7.75 -51.92 -0.40 0.43 16 33 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.11 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.39 4.51 6.63 -40.82 -0.27 4.24 16 38 H 0.11 1.37 6.40 -52.49 -0.34 1.03 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.15 3.35 5.03 -52.49 -0.26 3.08 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -37.53 372.31 -9.08 -46.61 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.75 Total: 5.76 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.93 Total: -23.22 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.53 Total: -34.41 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.57 Total: -22.65 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.11 kcal Atomic # 16 Polarization: 9.44 SS G_CDS: -3.26 Total: 6.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.53 -9.08 -46.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900891211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.234 kcal (2) G-P(sol) polarization free energy of solvation -37.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds