Wall clock time and date at job start Tue Mar 31 2020 23:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47512 * 2 1 4 4 C 1.52999 * 109.46975 * 119.99376 * 2 1 3 5 5 C 1.53001 * 109.47185 * 184.99886 * 4 2 1 6 6 S 1.81405 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.81396 * 103.00016 * 180.02562 * 6 5 4 8 8 O 1.42107 * 109.46648 * 296.39114 * 6 5 4 9 9 N 1.46494 * 109.47291 * 239.99511 * 2 1 3 10 10 C 1.34774 * 119.99973 * 85.00316 * 9 2 1 11 11 O 1.21609 * 120.00320 * 359.97438 * 10 9 2 12 12 C 1.47429 * 119.99840 * 180.02562 * 10 9 2 13 13 C 1.39682 * 120.21882 * 359.97438 * 12 10 9 14 14 C 1.37801 * 119.94016 * 179.97438 * 13 12 10 15 15 C 1.38654 * 120.38549 * 0.02562 * 14 13 12 16 16 C 1.37919 * 120.43362 * 359.97438 * 15 14 13 17 17 C 1.39101 * 120.05207 * 359.97438 * 16 15 14 18 18 S 1.76206 * 120.18871 * 180.02562 * 17 16 15 19 19 C 1.76200 * 99.99847 * 6.83369 * 18 17 16 20 20 H 1.07998 * 120.00274 * 5.66026 * 19 18 17 21 21 C 1.38805 * 119.99573 * 185.65392 * 19 18 17 22 22 N 1.31555 * 120.00478 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46989 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47010 * 120.00235 * 23 21 19 26 26 H 1.48497 * 109.47529 * 240.00149 * 23 21 19 27 27 H 1.09000 * 109.46703 * 60.00328 * 1 2 3 28 28 H 1.08995 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46941 * 300.00773 * 1 2 3 30 30 H 1.09000 * 109.47564 * 305.00029 * 4 2 1 31 31 H 1.09000 * 109.47341 * 65.00286 * 4 2 1 32 32 H 1.08992 * 109.47147 * 300.00263 * 5 4 2 33 33 H 1.09005 * 109.47103 * 60.00526 * 5 4 2 34 34 H 1.08995 * 109.47314 * 59.99728 * 7 6 5 35 35 H 1.08995 * 109.47169 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46922 * 299.99821 * 7 6 5 37 37 H 0.97000 * 120.00176 * 265.00314 * 9 2 1 38 38 H 1.07998 * 120.02576 * 0.04797 * 13 12 10 39 39 H 1.08008 * 119.80460 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.78248 * 180.27544 * 15 14 13 41 41 H 1.08005 * 119.96990 * 180.02562 * 16 15 14 42 42 H 0.96995 * 120.00304 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 16 4.1695 -1.4688 2.7947 7 6 5.9655 -1.2336 2.6970 8 8 3.6694 -0.8183 3.9549 9 7 2.0183 -0.6907 -1.1960 10 6 2.1471 -0.0184 -2.3570 11 8 1.8575 1.1614 -2.4119 12 6 2.6381 -0.7137 -3.5608 13 6 2.9715 -2.0689 -3.5031 14 6 3.4293 -2.7131 -4.6320 15 6 3.5622 -2.0238 -5.8277 16 6 3.2375 -0.6855 -5.9023 17 6 2.7726 -0.0175 -4.7742 18 16 2.3560 1.6922 -4.8657 19 6 2.5190 1.9543 -6.6005 20 1 2.7188 1.1199 -7.2563 21 6 2.3904 3.2334 -7.1241 22 7 2.1474 4.2499 -6.3252 23 14 2.5639 3.5115 -8.9631 24 1 2.8340 2.2158 -9.6364 25 1 1.3060 4.0932 -9.4966 26 1 3.6889 4.4465 -9.2185 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7714 1.2058 32 1 3.9994 -1.0727 0.4262 33 1 3.8532 0.4371 1.3574 34 1 6.1934 -0.1678 2.7066 35 1 6.4419 -1.7151 3.5509 36 1 6.3404 -1.6771 1.7745 37 1 2.2490 -1.6318 -1.1524 38 1 2.8695 -2.6115 -2.5749 39 1 3.6862 -3.7612 -4.5850 40 1 3.9177 -2.5395 -6.7075 41 1 3.3434 -0.1560 -6.8377 42 1 2.0580 5.1438 -6.6911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900891213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:38 Heat of formation + Delta-G solvation = -82.098022 kcal Electronic energy + Delta-G solvation = -24490.765641 eV Core-core repulsion = 20880.364235 eV Total energy + Delta-G solvation = -3610.401405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 13.56 seconds Orbital eigenvalues (eV) -41.04690 -39.07061 -37.34654 -36.76821 -34.76754 -33.64833 -31.88123 -31.72110 -30.51725 -29.68938 -27.83974 -25.43489 -24.44361 -23.38109 -22.07043 -21.45852 -19.91509 -18.71536 -18.31512 -17.52799 -17.18146 -17.03642 -16.30883 -16.02944 -15.89879 -15.67115 -15.58058 -15.35888 -15.23457 -14.70254 -14.50332 -14.44534 -14.20247 -13.84183 -13.53963 -13.38612 -13.28510 -13.10838 -13.01265 -12.84640 -12.79412 -12.55280 -12.49734 -12.14235 -12.02607 -11.87163 -11.43053 -11.41020 -11.21567 -11.02527 -10.37236 -10.07091 -9.87209 -9.69475 -9.18061 -8.45865 -8.44397 -6.24195 0.10512 0.60468 0.69745 1.26045 1.33905 1.44850 1.67471 1.79543 2.10236 2.18502 2.33873 2.88064 2.91478 3.10331 3.26156 3.78287 3.92081 4.02361 4.09043 4.12177 4.29502 4.32995 4.41233 4.52033 4.53047 4.67889 4.69762 4.75226 4.82178 4.90923 4.93801 5.10370 5.16737 5.18300 5.21592 5.34454 5.39657 5.51001 5.63068 5.67291 5.73724 6.11652 6.21868 6.77911 6.95790 7.49185 8.60015 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002712 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.733937 B =10322.075589 C =10966.738347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.046 0.954 4 C -0.100 4.100 5 C -0.453 4.453 6 S 1.314 4.686 7 C -0.494 4.494 8 O -0.929 6.929 9 N -0.702 5.702 10 C 0.545 3.455 11 O -0.562 6.562 12 C -0.181 4.181 13 C -0.050 4.050 14 C -0.154 4.154 15 C -0.072 4.072 16 C -0.178 4.178 17 C -0.074 4.074 18 S 0.055 5.945 19 C -0.599 4.599 20 H 0.094 0.906 21 C 0.022 3.978 22 N -0.907 5.907 23 Si 0.993 3.007 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.417 0.583 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -23.556 13.203 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.064 0.936 4 C -0.139 4.139 5 C -0.590 4.590 6 S 1.514 4.486 7 C -0.652 4.652 8 O -0.925 6.925 9 N -0.357 5.357 10 C 0.334 3.666 11 O -0.442 6.442 12 C -0.194 4.194 13 C -0.069 4.069 14 C -0.177 4.177 15 C -0.093 4.093 16 C -0.203 4.203 17 C -0.192 4.192 18 S 0.313 5.687 19 C -0.746 4.746 20 H 0.112 0.888 21 C -0.183 4.183 22 N -0.542 5.542 23 Si 0.814 3.186 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.163 0.837 37 H 0.257 0.743 38 H 0.190 0.810 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.131 0.869 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.865 -21.858 14.735 26.643 hybrid contribution 1.029 2.505 -2.172 3.472 sum 4.894 -19.353 12.563 23.587 Atomic orbital electron populations 1.22164 0.94992 1.03459 1.01394 1.20864 0.94114 0.96294 0.84506 0.93571 1.21487 0.92345 1.04111 0.95924 1.27794 1.03352 1.09538 1.18323 1.69450 0.84573 1.13204 0.81352 1.27681 1.20516 1.06323 1.10700 1.92999 1.76089 1.78854 1.44555 1.45618 1.67818 1.14395 1.07858 1.18545 0.77586 0.86176 0.84295 1.90795 1.51208 1.17854 1.84381 1.19545 1.11664 0.96251 0.91931 1.21534 0.94359 0.90511 1.00519 1.21369 1.03091 1.01609 0.91650 1.21545 0.95691 0.92258 0.99805 1.21423 1.04330 0.96839 0.97742 1.22984 0.99148 1.00420 0.96646 1.84986 1.76034 1.00220 1.07440 1.24279 1.56893 0.97542 0.95864 0.88836 1.26157 0.92956 0.94356 1.04838 1.70144 1.45648 1.00541 1.37903 0.84993 0.78372 0.79004 0.76185 1.17942 1.19670 1.19536 0.95434 0.89511 0.90952 0.90868 0.85467 0.83776 0.92387 0.92261 0.86710 0.83696 0.74347 0.80976 0.81244 0.83594 0.86882 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.48 71.98 0.68 -2.97 16 2 C 0.15 3.39 2.57 44.99 0.12 3.50 16 3 H 0.05 1.46 7.58 -2.39 -0.02 1.44 16 4 C -0.10 -1.39 4.76 30.59 0.15 -1.24 16 5 C -0.45 -5.94 5.81 71.98 0.42 -5.52 16 6 S 1.31 13.15 13.80 -56.49 -0.78 12.37 16 7 C -0.49 -4.48 10.74 113.37 1.22 -3.26 16 8 O -0.93 -24.31 18.14 -148.98 -2.70 -27.01 16 9 N -0.70 -16.01 4.48 -445.81 -2.00 -18.01 16 10 C 0.55 19.96 7.71 86.66 0.67 20.63 16 11 O -0.56 -27.56 13.43 -4.06 -0.05 -27.61 16 12 C -0.18 -6.48 5.89 -19.95 -0.12 -6.59 16 13 C -0.05 -1.12 9.53 22.52 0.21 -0.90 16 14 C -0.15 -3.24 10.02 22.27 0.22 -3.01 16 15 C -0.07 -2.03 10.03 22.29 0.22 -1.80 16 16 C -0.18 -7.22 9.22 22.40 0.21 -7.02 16 17 C -0.07 -3.39 6.15 23.04 0.14 -3.25 16 18 S 0.05 3.18 18.56 -56.49 -1.05 2.13 16 19 C -0.60 -35.27 9.00 67.96 0.61 -34.66 16 20 H 0.09 5.20 4.98 -2.91 -0.01 5.18 16 21 C 0.02 1.29 5.49 84.87 0.47 1.75 16 22 N -0.91 -56.38 13.22 21.65 0.29 -56.10 16 23 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.14 1.14 7.75 -2.39 -0.02 1.13 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.42 5.15 6.63 -92.71 -0.61 4.54 16 38 H 0.17 1.80 6.40 -2.91 -0.02 1.78 16 39 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.11 5.07 5.03 -2.91 -0.01 5.06 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -97.81 374.99 1.38 -96.44 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.43 Total: 15.73 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 5.22 Total: -44.34 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.71 Total: -74.10 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.76 Total: -54.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 16.32 SS G_CDS: -1.83 Total: 14.50 kcal Total: -97.81 1.38 -96.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900891213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.338 kcal (2) G-P(sol) polarization free energy of solvation -97.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.56 seconds