Wall clock time and date at job start Tue Mar 31 2020 23:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47034 * 2 1 4 4 O 1.45199 * 109.47171 * 240.00553 * 2 1 3 5 5 C 1.34228 * 117.00124 * 89.99638 * 4 2 1 6 6 O 1.20820 * 120.00370 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99791 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47054 * 180.02562 * 7 5 4 9 9 C 1.76201 * 100.00066 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99697 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99994 * 180.02562 * 9 8 7 12 12 N 1.31630 * 120.00335 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46845 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47412 * 119.99146 * 13 11 9 16 16 H 1.48500 * 109.47151 * 239.99664 * 13 11 9 17 17 C 1.50694 * 109.47195 * 120.00399 * 2 1 3 18 18 O 1.21283 * 120.00363 * 114.99942 * 17 2 1 19 19 N 1.34784 * 119.99988 * 295.00060 * 17 2 1 20 20 C 1.46493 * 119.99864 * 179.72721 * 19 17 2 21 21 C 1.50698 * 109.47082 * 180.02562 * 20 19 17 22 22 C 1.38219 * 120.01966 * 104.99922 * 21 20 19 23 23 C 1.38220 * 120.03033 * 179.97438 * 22 21 20 24 24 C 1.38267 * 120.04910 * 0.02562 * 23 22 21 25 25 C 1.38178 * 120.02836 * 0.02562 * 24 23 22 26 26 C 1.38450 * 120.01017 * 284.72211 * 21 20 19 27 27 F 1.35095 * 120.02331 * 359.97438 * 26 21 20 28 28 H 1.09004 * 109.46872 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47472 * 299.99804 * 1 2 3 30 30 H 1.08998 * 109.47416 * 59.99963 * 1 2 3 31 31 H 1.09002 * 109.47270 * 299.99710 * 7 5 4 32 32 H 1.08994 * 109.47198 * 60.00143 * 7 5 4 33 33 H 0.96998 * 120.00671 * 180.02562 * 12 11 9 34 34 H 0.97000 * 119.99339 * 0.02562 * 19 17 2 35 35 H 1.09007 * 109.47196 * 299.99538 * 20 19 17 36 36 H 1.09006 * 109.47678 * 59.99732 * 20 19 17 37 37 H 1.08007 * 119.98454 * 359.97438 * 22 21 20 38 38 H 1.08004 * 119.97385 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.98519 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.01333 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2170 0.0642 -2.2811 6 8 1.9981 1.2520 -2.2503 7 6 2.7182 -0.5770 -3.5495 8 16 2.8900 0.6845 -4.8361 9 6 3.4735 -0.3128 -6.1664 10 1 3.6172 -1.3736 -6.0233 11 6 3.7496 0.2652 -7.3978 12 7 3.5750 1.5581 -7.5720 13 14 4.3675 -0.7922 -8.8083 14 1 4.4777 -2.2030 -8.3580 15 1 3.4150 -0.7078 -9.9445 16 1 5.7015 -0.3063 -9.2436 17 6 2.0323 -0.7105 1.2304 18 8 2.6529 -1.7467 1.1214 19 7 1.7918 -0.1943 2.4520 20 6 2.2750 -0.8881 3.6483 21 6 1.8769 -0.1096 4.8757 22 6 0.8413 -0.5583 5.6735 23 6 0.4763 0.1553 6.7996 24 6 1.1463 1.3190 7.1291 25 6 2.1812 1.7703 6.3325 26 6 2.5522 1.0526 5.2078 27 9 3.5686 1.4889 4.4322 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.6871 -1.0406 -3.3641 32 1 2.0087 -1.3366 -3.8775 33 1 3.7675 1.9620 -8.4326 34 1 1.2951 0.6343 2.5391 35 1 1.8359 -1.8848 3.6926 36 1 3.3611 -0.9710 3.6066 37 1 0.3170 -1.4671 5.4169 38 1 -0.3333 -0.1960 7.4221 39 1 0.8600 1.8761 8.0090 40 1 2.7041 2.6795 6.5898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915386431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:56 Heat of formation + Delta-G solvation = -143.292899 kcal Electronic energy + Delta-G solvation = -25676.098083 eV Core-core repulsion = 21496.829893 eV Total energy + Delta-G solvation = -4179.268190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.35829 -40.66231 -39.84837 -39.14347 -36.24013 -35.34039 -32.79189 -32.47287 -31.50853 -30.96993 -29.42725 -26.90448 -25.56488 -24.57713 -23.37358 -22.18070 -21.30008 -20.39336 -18.35231 -18.07728 -17.66355 -17.24868 -17.00065 -16.45644 -16.15424 -16.06627 -15.83846 -15.27076 -15.13646 -14.83274 -14.70631 -14.16444 -14.10337 -13.81273 -13.58962 -13.54672 -13.10354 -12.87747 -12.77740 -12.66999 -12.52736 -12.18235 -12.11646 -11.64680 -11.57292 -11.08147 -11.06596 -10.81685 -10.72829 -10.13367 -10.01937 -9.87592 -9.58003 -9.47489 -9.23584 -9.11053 -8.35187 -6.59251 -6.26364 -3.98786 0.46331 0.60758 2.23445 2.35270 2.61371 2.88114 3.14858 3.21260 3.28185 3.33571 3.58243 3.69676 3.94717 4.15518 4.16045 4.36707 4.38368 4.60853 4.68605 4.72035 4.84546 4.97682 5.03330 5.09769 5.14815 5.32494 5.35000 5.45508 5.48592 5.55612 5.58720 5.72211 5.79718 5.80332 5.87463 5.97180 6.11857 6.27940 6.58320 7.07872 7.57571 7.89209 8.11141 8.32326 9.19541 10.81232 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.030454 B = 0.001791 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.189785 B =15627.106536 C =15800.881243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.112 0.888 4 O -0.332 6.332 5 C 0.481 3.519 6 O -0.487 6.487 7 C -0.127 4.127 8 S -0.058 6.058 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.922 3.078 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.522 3.478 18 O -0.512 6.512 19 N -0.725 5.725 20 C 0.165 3.835 21 C -0.145 4.145 22 C -0.071 4.071 23 C -0.132 4.132 24 C -0.083 4.083 25 C -0.156 4.156 26 C 0.116 3.884 27 F -0.131 7.131 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.269 0.731 34 H 0.402 0.598 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 -1.979 31.633 32.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 H 0.129 0.871 4 O -0.249 6.249 5 C 0.322 3.678 6 O -0.373 6.373 7 C -0.275 4.275 8 S 0.168 5.832 9 C -0.683 4.683 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.748 3.252 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.307 3.693 18 O -0.386 6.386 19 N -0.380 5.380 20 C 0.042 3.958 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.151 4.151 24 C -0.101 4.101 25 C -0.175 4.175 26 C 0.096 3.904 27 F -0.109 7.109 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.102 -1.118 31.450 32.496 hybrid contribution 0.588 -1.270 -0.872 1.650 sum -7.513 -2.388 30.577 31.577 Atomic orbital electron populations 1.22146 0.91863 1.03971 1.04145 1.22312 0.95968 0.97811 0.82953 0.87081 1.86677 1.77480 1.41564 1.19146 1.23465 0.74001 0.85943 0.84367 1.90652 1.46995 1.16209 1.83408 1.23310 1.04775 1.05851 0.93586 1.85369 1.86779 1.08733 1.02293 1.22897 1.51560 0.96548 0.97286 0.90457 1.25003 0.94938 0.95389 0.98196 1.70017 1.45564 1.09995 1.24727 0.86064 0.78455 0.79969 0.80722 1.19466 1.20510 1.20513 1.20252 0.79698 0.85445 0.83952 1.90756 1.38697 1.22852 1.86262 1.45866 1.59077 1.28182 1.04866 1.20087 1.00620 0.94960 0.80123 1.19965 0.99004 0.96355 0.99263 1.21053 0.94579 0.99635 0.93689 1.21263 1.00704 0.95579 0.97513 1.21125 0.94227 0.95905 0.98861 1.21232 0.99914 1.01454 0.94913 1.17657 0.87496 0.94226 0.90992 1.91560 1.56757 1.88967 1.73641 0.90846 0.90490 0.90088 0.87668 0.87699 0.92136 0.76299 0.89725 0.89968 0.84578 0.84966 0.84780 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.50 37.16 0.35 -1.34 16 2 C 0.07 0.93 2.97 -27.89 -0.08 0.85 16 3 H 0.11 1.47 7.16 -51.93 -0.37 1.10 16 4 O -0.33 -5.78 9.42 -45.88 -0.43 -6.22 16 5 C 0.48 9.48 7.95 36.01 0.29 9.77 16 6 O -0.49 -10.48 15.08 -18.74 -0.28 -10.77 16 7 C -0.13 -2.69 6.27 36.01 0.23 -2.46 16 8 S -0.06 -1.56 20.58 -107.50 -2.21 -3.77 16 9 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 10 H 0.08 2.09 7.80 -52.48 -0.41 1.68 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 13 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.52 6.86 7.18 -10.98 -0.08 6.78 16 18 O -0.51 -8.79 16.51 -14.05 -0.23 -9.02 16 19 N -0.72 -6.72 5.51 -61.47 -0.34 -7.05 16 20 C 0.16 1.38 5.49 -5.20 -0.03 1.36 16 21 C -0.14 -0.98 5.25 -104.55 -0.55 -1.53 16 22 C -0.07 -0.35 9.67 -39.60 -0.38 -0.73 16 23 C -0.13 -0.53 10.04 -39.58 -0.40 -0.93 16 24 C -0.08 -0.35 10.04 -39.59 -0.40 -0.74 16 25 C -0.16 -0.89 10.03 -39.51 -0.40 -1.29 16 26 C 0.12 0.88 7.25 -39.41 -0.29 0.59 16 27 F -0.13 -1.28 16.75 2.25 0.04 -1.24 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 2.11 8.14 -51.91 -0.42 1.69 16 32 H 0.10 2.05 8.14 -51.92 -0.42 1.62 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.40 2.83 8.25 -40.82 -0.34 2.50 16 35 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.14 0.45 8.00 -52.48 -0.42 0.03 16 38 H 0.13 0.25 8.06 -52.48 -0.42 -0.17 16 39 H 0.13 0.25 8.06 -52.48 -0.42 -0.17 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -35.77 374.79 -8.51 -44.28 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.88 Total: -0.49 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.54 Total: -2.58 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.40 Total: -32.22 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.95 Total: -26.01 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.77 -8.51 -44.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915386431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.012 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds