Wall clock time and date at job start Tue Mar 31 2020 23:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99579 * 2 1 4 4 O 1.20826 * 120.00486 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99888 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47356 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99715 * 273.79339 * 6 5 3 8 8 H 1.07999 * 120.00604 * 338.42537 * 7 6 5 9 9 C 1.38952 * 119.99467 * 158.42476 * 7 6 5 10 10 N 1.31412 * 120.00315 * 352.68944 * 9 7 6 11 11 Si 1.86800 * 119.99781 * 172.68876 * 9 7 6 12 12 H 1.48501 * 109.47247 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47339 * 120.00097 * 11 9 7 14 14 H 1.48504 * 109.47356 * 239.99840 * 11 9 7 15 15 C 1.34776 * 119.99764 * 93.79450 * 6 5 3 16 16 O 1.21289 * 119.99855 * 128.19594 * 15 6 5 17 17 C 1.50696 * 120.00123 * 308.19287 * 15 6 5 18 18 H 1.09004 * 109.46700 * 41.95767 * 17 15 6 19 19 C 1.52998 * 109.47247 * 281.96002 * 17 15 6 20 20 S 1.81395 * 109.47311 * 161.95512 * 17 15 6 21 21 C 1.76207 * 102.99970 * 291.77314 * 20 17 15 22 22 C 1.38938 * 120.05352 * 353.94575 * 21 20 17 23 23 C 1.38104 * 119.94301 * 180.23459 * 22 21 20 24 24 C 1.38477 * 120.05332 * 359.51696 * 23 22 21 25 25 F 1.35101 * 119.94585 * 180.28016 * 24 23 22 26 26 C 1.38479 * 120.11041 * 0.25392 * 24 23 22 27 27 C 1.38094 * 120.05706 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.47058 * 60.00531 * 1 2 3 29 29 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47072 * 299.99794 * 1 2 3 31 31 H 1.09010 * 109.47311 * 59.99991 * 5 3 2 32 32 H 1.08997 * 109.47494 * 300.00584 * 5 3 2 33 33 H 0.96995 * 120.00125 * 185.00614 * 10 9 7 34 34 H 1.09006 * 109.46758 * 293.85225 * 19 17 15 35 35 H 1.08989 * 109.47445 * 53.85698 * 19 17 15 36 36 H 1.09004 * 109.47150 * 173.86142 * 19 17 15 37 37 H 1.07999 * 120.03070 * 0.02562 * 22 21 20 38 38 H 1.07996 * 119.97323 * 179.79631 * 23 22 21 39 39 H 1.08006 * 119.97060 * 180.02562 * 26 24 23 40 40 H 1.08001 * 120.03482 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.1011 3.3587 -1.1853 8 1 4.2363 2.8143 -2.1082 9 6 4.0483 4.7471 -1.1989 10 7 3.7413 5.4038 -0.1028 11 14 4.4137 5.6802 -2.7754 12 1 4.7307 4.7158 -3.8593 13 1 3.2269 6.4857 -3.1603 14 1 5.5745 6.5810 -2.5598 15 6 4.2463 3.3049 1.1642 16 8 5.2943 3.8979 1.3097 17 6 3.2400 3.2671 2.2854 18 1 2.8205 2.2640 2.3633 19 6 2.1189 4.2679 1.9985 20 16 4.0562 3.7040 3.8454 21 6 5.1264 2.3335 4.1302 22 6 5.0724 1.2234 3.2965 23 6 5.9089 0.1485 3.5247 24 6 6.8079 0.1807 4.5775 25 9 7.6291 -0.8697 4.7954 26 6 6.8669 1.2879 5.4071 27 6 6.0293 2.3633 5.1858 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7810 0.8907 33 1 3.6332 6.3674 -0.1290 34 1 2.5199 5.2811 2.0286 35 1 1.7007 4.0719 1.0113 36 1 1.3376 4.1639 2.7514 37 1 4.3745 1.1997 2.4726 38 1 5.8650 -0.7160 2.8789 39 1 7.5692 1.3108 6.2273 40 1 6.0759 3.2269 5.8328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933217873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:59 Heat of formation + Delta-G solvation = -103.689360 kcal Electronic energy + Delta-G solvation = -28574.540849 eV Core-core repulsion = 24396.989997 eV Total energy + Delta-G solvation = -4177.550852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 8.58 seconds Orbital eigenvalues (eV) -48.74837 -40.02744 -38.75595 -38.33559 -35.93900 -34.31797 -32.37472 -31.80899 -30.97817 -30.33350 -28.54274 -26.46275 -25.03997 -23.77255 -22.69094 -22.41514 -20.84830 -19.47415 -17.88865 -17.23871 -17.11500 -16.92674 -16.32266 -16.12468 -15.94967 -15.46287 -15.39299 -15.04086 -14.83309 -14.34199 -13.83040 -13.79637 -13.51070 -13.22310 -13.12168 -13.05230 -12.57343 -12.54086 -12.05251 -11.79276 -11.71455 -11.37814 -11.29757 -11.08436 -10.95616 -10.92239 -10.66726 -10.52824 -10.35509 -10.29554 -9.99046 -9.70353 -9.30476 -9.18769 -9.04561 -8.46139 -7.57206 -6.89372 -6.27163 -3.81895 1.17839 1.32311 1.94498 2.77685 2.81427 3.08106 3.21439 3.29779 3.32116 3.64263 3.76902 4.17749 4.37898 4.67998 4.76572 4.92555 5.14387 5.16262 5.30364 5.37059 5.40711 5.43525 5.50155 5.53079 5.61899 5.73632 5.81467 5.85982 5.96008 6.09483 6.20883 6.26313 6.35605 6.44986 6.71831 6.85474 6.92818 7.33161 7.42076 7.90441 8.37814 8.82180 9.06081 9.35547 9.83176 10.83499 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.004896 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.728195 B = 5717.919280 C = 6771.048372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.418 3.582 4 O -0.473 6.473 5 C 0.127 3.873 6 N -0.495 5.495 7 C -0.303 4.303 8 H 0.087 0.913 9 C 0.035 3.965 10 N -0.857 5.857 11 Si 0.930 3.070 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.557 3.443 16 O -0.487 6.487 17 C -0.086 4.086 18 H 0.076 0.924 19 C -0.104 4.104 20 S -0.075 6.075 21 C -0.075 4.075 22 C -0.109 4.109 23 C -0.128 4.128 24 C 0.076 3.924 25 F -0.145 7.145 26 C -0.133 4.133 27 C -0.080 4.080 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -9.877 6.629 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.292 6.292 3 C 0.256 3.744 4 O -0.357 6.357 5 C -0.001 4.001 6 N -0.221 5.221 7 C -0.429 4.429 8 H 0.105 0.895 9 C -0.171 4.171 10 N -0.496 5.496 11 Si 0.757 3.243 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.343 3.657 16 O -0.358 6.358 17 C -0.219 4.219 18 H 0.094 0.906 19 C -0.162 4.162 20 S 0.173 5.827 21 C -0.189 4.189 22 C -0.134 4.134 23 C -0.148 4.148 24 C 0.054 3.946 25 F -0.124 7.124 26 C -0.154 4.154 27 C -0.104 4.104 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.055 0.945 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.349 -7.919 7.410 11.096 hybrid contribution -0.139 -0.794 -1.623 1.812 sum -2.488 -8.713 5.787 10.752 Atomic orbital electron populations 1.23100 0.78108 1.02602 1.02122 1.86590 1.22340 1.35330 1.84984 1.26029 0.93932 0.81263 0.73167 1.90627 1.66410 1.35871 1.42756 1.21431 0.85751 0.88928 1.04040 1.42814 1.65242 1.08176 1.05883 1.19304 1.49717 0.89178 0.84739 0.89474 1.25126 0.96812 0.97021 0.98140 1.69490 1.44650 1.08702 1.26755 0.85827 0.77885 0.79509 0.81029 1.19744 1.21027 1.20829 1.18826 0.85639 0.79434 0.81837 1.90504 1.24808 1.41148 1.79345 1.24081 1.01185 1.02933 0.93725 0.90601 1.21455 0.93306 0.98437 1.03027 1.85161 1.45254 1.25913 1.26345 1.21982 1.00621 0.97928 0.98396 1.21102 1.00199 0.92644 0.99407 1.20975 0.96298 0.99925 0.97629 1.17569 0.93162 0.85732 0.98159 1.91466 1.70718 1.55638 1.94529 1.20981 1.01075 0.92938 1.00407 1.20577 0.94302 0.98341 0.97223 0.92359 0.89048 0.92490 0.87289 0.89415 0.91892 0.90517 0.87680 0.94519 0.85557 0.84590 0.84636 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.38 -5.68 10.57 -39.24 -0.41 -6.10 16 3 C 0.42 7.55 7.17 36.01 0.26 7.81 16 4 O -0.47 -10.00 13.22 -18.75 -0.25 -10.25 16 5 C 0.13 2.29 5.64 -5.19 -0.03 2.26 16 6 N -0.49 -11.47 2.11 -116.09 -0.24 -11.72 16 7 C -0.30 -7.71 9.51 -14.93 -0.14 -7.85 16 8 H 0.09 2.11 7.84 -52.49 -0.41 1.70 16 9 C 0.03 0.91 5.13 -17.47 -0.09 0.82 16 10 N -0.86 -23.26 8.61 55.50 0.48 -22.78 16 11 Si 0.93 20.98 29.56 -169.99 -5.03 15.95 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.56 13.31 2.49 -10.99 -0.03 13.29 16 16 O -0.49 -13.47 15.41 5.55 0.09 -13.38 16 17 C -0.09 -1.79 1.78 -27.89 -0.05 -1.84 16 18 H 0.08 1.46 5.77 -51.92 -0.30 1.16 16 19 C -0.10 -2.21 7.83 37.16 0.29 -1.91 16 20 S -0.07 -1.43 20.55 -107.50 -2.21 -3.64 16 21 C -0.08 -1.31 6.04 -39.06 -0.24 -1.55 16 22 C -0.11 -1.82 8.81 -39.37 -0.35 -2.17 16 23 C -0.13 -1.86 10.02 -39.54 -0.40 -2.26 16 24 C 0.08 1.09 7.30 -39.40 -0.29 0.81 16 25 F -0.14 -2.03 17.26 2.25 0.04 -1.99 16 26 C -0.13 -1.79 10.02 -39.55 -0.40 -2.19 16 27 C -0.08 -1.19 9.79 -39.37 -0.39 -1.58 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.11 1.74 8.07 -51.92 -0.42 1.32 16 32 H 0.09 1.37 5.45 -51.93 -0.28 1.09 16 33 H 0.27 7.13 8.32 -40.82 -0.34 6.79 16 34 H 0.08 1.77 7.37 -51.93 -0.38 1.39 16 35 H 0.10 2.50 5.73 -51.94 -0.30 2.20 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 2.14 2.56 -52.49 -0.13 2.01 16 38 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -31.41 348.51 -7.38 -38.79 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.32 Total: 4.74 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.77 Total: 5.13 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.23 Total: -34.50 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.58 Total: -29.73 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.41 -7.38 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933217873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.902 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.58 seconds