Wall clock time and date at job start Wed Apr 1 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35517 * 117.00148 * 2 1 4 4 N 1.32407 * 119.53066 * 359.97438 * 3 2 1 5 5 C 1.31655 * 121.81286 * 179.74442 * 4 3 2 6 6 C 1.39546 * 120.64887 * 0.54192 * 5 4 3 7 7 C 1.47614 * 120.49308 * 179.74877 * 6 5 4 8 8 O 1.21577 * 120.00314 * 179.71750 * 7 6 5 9 9 N 1.34783 * 120.00123 * 359.71832 * 7 6 5 10 10 C 1.46495 * 120.00104 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.88643 * 31.12435 * 10 9 7 12 12 C 1.55123 * 111.22992 * 267.20900 * 10 9 7 13 13 N 1.47420 * 104.72348 * 279.17611 * 12 10 9 14 14 C 1.36941 * 125.65328 * 155.81149 * 13 12 10 15 15 H 1.08004 * 119.99682 * 5.56440 * 14 13 12 16 16 C 1.38809 * 120.00409 * 185.55417 * 14 13 12 17 17 N 1.31621 * 120.00091 * 7.32909 * 16 14 13 18 18 Si 1.86797 * 120.00086 * 187.32322 * 16 14 13 19 19 H 1.48496 * 109.47097 * 84.99270 * 18 16 14 20 20 H 1.48507 * 109.47357 * 324.99550 * 18 16 14 21 21 H 1.48499 * 109.47352 * 204.99398 * 18 16 14 22 22 C 1.47025 * 108.70274 * 335.55601 * 13 12 10 23 23 C 1.54317 * 107.27002 * 1.28135 * 22 13 12 24 24 H 1.09002 * 110.72105 * 263.83122 * 23 22 13 25 25 O 1.42899 * 110.72068 * 140.56181 * 23 22 13 26 26 C 1.40250 * 119.01131 * 359.47064 * 6 5 4 27 27 C 1.38086 * 118.34475 * 0.25629 * 26 6 5 28 28 Cl 1.73594 * 120.37517 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.47308 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47089 * 299.99714 * 1 2 3 31 31 H 1.08999 * 109.47137 * 60.00132 * 1 2 3 32 32 H 1.08005 * 119.67296 * 180.28455 * 5 4 3 33 33 H 0.97001 * 120.00041 * 0.02562 * 9 7 6 34 34 H 1.09005 * 110.49943 * 160.33448 * 12 10 9 35 35 H 1.09001 * 110.34282 * 37.93925 * 12 10 9 36 36 H 0.97001 * 120.00005 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.88454 * 120.70691 * 22 13 12 38 38 H 1.09003 * 109.87921 * 241.71412 * 22 13 12 39 39 H 0.96695 * 114.00682 * 61.45176 * 25 23 22 40 40 H 1.07996 * 120.82284 * 180.27841 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3141 2.3120 -0.0005 5 6 1.8646 3.5079 0.0045 6 6 3.2526 3.6521 -0.0009 7 6 3.8662 4.9947 -0.0008 8 8 5.0765 5.1099 -0.0003 9 7 3.0847 6.0928 -0.0014 10 6 3.6937 7.4252 -0.0008 11 1 4.6485 7.4163 -0.5264 12 6 3.8619 7.9653 1.4436 13 7 2.5322 8.4890 1.8051 14 6 2.0509 8.6347 3.0788 15 1 2.6939 8.4402 3.9245 16 6 0.7368 9.0326 3.2831 17 7 -0.0876 9.1302 2.2617 18 14 0.1384 9.4292 5.0076 19 1 0.4666 10.8404 5.3330 20 1 0.8048 8.5286 5.9823 21 1 -1.3320 9.2340 5.0784 22 6 1.8104 8.8348 0.5717 23 6 2.7313 8.4767 -0.6137 24 1 3.2832 9.3538 -0.9519 25 8 1.9772 7.9078 -1.6858 26 6 4.0559 2.5024 -0.0003 27 6 3.4352 1.2689 0.0002 28 17 4.3784 -0.1884 0.0002 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2358 4.3860 0.0085 33 1 2.1191 6.0009 -0.0014 34 1 4.6037 8.7636 1.4686 35 1 4.1484 7.1588 2.1187 36 1 -1.0059 9.4079 2.4045 37 1 0.8860 8.2606 0.5097 38 1 1.5856 9.9013 0.5605 39 1 1.3067 8.5000 -2.0528 40 1 5.1331 2.5800 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084083313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:37 Heat of formation + Delta-G solvation = -52.875540 kcal Electronic energy + Delta-G solvation = -27439.387905 eV Core-core repulsion = 23281.916761 eV Total energy + Delta-G solvation = -4157.471144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10339 -39.66411 -38.29022 -37.53140 -36.79419 -35.13021 -33.86651 -32.64188 -31.97383 -30.84825 -28.57477 -27.69046 -27.06137 -24.74104 -24.21050 -23.57562 -21.17015 -20.45006 -19.90757 -18.84555 -17.97479 -17.63325 -16.91415 -16.69518 -16.43499 -15.70538 -15.55411 -14.86196 -14.80262 -14.56962 -14.45078 -14.07509 -13.81922 -13.70392 -13.23611 -13.16375 -12.76332 -12.48382 -12.24765 -12.18621 -12.03434 -11.58456 -11.43045 -11.34296 -11.31558 -10.91790 -10.76945 -10.43073 -10.20632 -10.15859 -9.99221 -9.91402 -9.65412 -9.37313 -8.88916 -8.74559 -8.56007 -6.95546 -5.82210 -3.18517 0.43955 0.75427 1.79590 2.64439 2.80668 3.31529 3.34547 3.40254 3.40908 3.62857 3.92907 4.36343 4.43370 4.54206 4.60594 4.81489 4.86985 5.03813 5.08309 5.14551 5.31273 5.35953 5.41172 5.46504 5.57380 5.70586 5.75780 5.89268 6.04589 6.18415 6.34610 6.53925 6.75224 6.88351 7.16487 7.34768 7.42654 7.64454 7.78667 8.01192 8.12116 8.40656 9.08034 9.68824 10.32134 11.27278 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.003157 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.459993 B = 8867.658997 C = 9771.073633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.351 3.649 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.205 4.205 7 C 0.568 3.432 8 O -0.546 6.546 9 N -0.682 5.682 10 C 0.141 3.859 11 H 0.096 0.904 12 C 0.122 3.878 13 N -0.599 5.599 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.141 3.859 23 C 0.065 3.935 24 H 0.068 0.932 25 O -0.563 6.563 26 C 0.024 3.976 27 C -0.120 4.120 28 Cl -0.041 7.041 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.407 0.593 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.378 0.622 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -13.703 -8.462 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.199 6.199 3 C 0.171 3.829 4 N -0.249 5.249 5 C 0.031 3.969 6 C -0.211 4.211 7 C 0.353 3.647 8 O -0.426 6.426 9 N -0.332 5.332 10 C 0.035 3.965 11 H 0.114 0.886 12 C -0.005 4.005 13 N -0.326 5.326 14 C -0.357 4.357 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.016 3.984 23 C 0.005 3.995 24 H 0.085 0.915 25 O -0.368 6.368 26 C -0.002 4.002 27 C -0.150 4.150 28 Cl -0.012 7.012 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.192 0.808 33 H 0.243 0.757 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.225 0.775 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.826 -14.559 -8.242 16.967 hybrid contribution -0.604 0.903 0.891 1.405 sum 2.222 -13.656 -7.351 15.667 Atomic orbital electron populations 1.22998 0.76348 1.03410 1.03110 1.86279 1.23559 1.23540 1.86531 1.19732 0.87693 0.85708 0.89784 1.67539 1.39032 0.98242 1.20117 1.22903 0.91928 0.94103 0.87935 1.20854 0.94526 0.94845 1.10900 1.17656 0.86621 0.83506 0.76877 1.90761 1.13621 1.86884 1.51294 1.45407 1.10474 1.04805 1.72481 1.22268 0.96078 0.80633 0.97501 0.88578 1.22084 0.89608 0.96388 0.92409 1.44311 1.11591 1.74454 1.02281 1.19050 0.94610 1.39808 0.82183 0.90342 1.24776 0.95835 1.01973 0.97612 1.69897 1.05057 1.53341 1.28567 0.86136 0.77745 0.78315 0.83562 1.21536 1.20699 1.21680 1.21970 0.94142 0.99490 0.82844 1.23509 0.93316 0.94354 0.88288 0.91462 1.86397 1.53535 1.45364 1.51486 1.21468 1.01964 0.88053 0.88732 1.20687 0.89347 0.90008 1.14950 1.98376 1.71338 1.34339 1.97135 0.88207 0.91676 0.91774 0.80819 0.75710 0.94767 0.93074 0.93685 0.90735 0.94825 0.77450 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.37 101.05 1.05 1.35 16 2 O -0.29 -3.38 9.93 -18.24 -0.18 -3.56 16 3 C 0.35 4.49 7.49 -16.94 -0.13 4.36 16 4 N -0.53 -6.89 9.18 -12.94 -0.12 -7.01 16 5 C 0.19 2.47 10.71 -17.14 -0.18 2.29 16 6 C -0.21 -2.87 5.89 -104.83 -0.62 -3.48 16 7 C 0.57 9.29 7.77 -12.43 -0.10 9.19 16 8 O -0.55 -10.24 16.05 5.30 0.09 -10.15 16 9 N -0.68 -11.24 4.77 -52.63 -0.25 -11.49 16 10 C 0.14 2.45 3.31 -65.67 -0.22 2.24 16 11 H 0.10 1.62 7.54 -51.93 -0.39 1.23 16 12 C 0.12 2.44 6.95 -2.42 -0.02 2.42 16 13 N -0.60 -14.10 3.39 -169.94 -0.58 -14.68 16 14 C -0.23 -6.03 10.26 -15.06 -0.15 -6.19 16 15 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 16 C -0.01 -0.15 5.45 -17.43 -0.09 -0.24 16 17 N -0.92 -25.16 10.45 55.49 0.58 -24.58 16 18 Si 0.91 21.31 29.56 -169.99 -5.02 16.28 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.14 3.02 5.21 -3.07 -0.02 3.01 16 23 C 0.07 1.10 4.12 -24.90 -0.10 0.99 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 25 O -0.56 -8.38 12.67 -35.23 -0.45 -8.83 16 26 C 0.02 0.31 9.50 -38.88 -0.37 -0.06 16 27 C -0.12 -1.50 6.35 -39.27 -0.25 -1.75 16 28 Cl -0.04 -0.45 28.52 -51.86 -1.48 -1.93 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.17 2.07 6.41 -52.48 -0.34 1.74 16 33 H 0.41 6.51 6.44 -40.82 -0.26 6.25 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.07 1.77 6.80 -51.93 -0.35 1.42 16 38 H 0.03 0.80 7.97 -51.93 -0.41 0.38 16 39 H 0.38 4.29 9.11 45.56 0.42 4.70 16 40 H 0.16 1.98 7.73 -52.49 -0.41 1.57 16 LS Contribution 356.14 15.07 5.37 5.37 Total: -1.00 -30.99 356.14 -7.07 -38.06 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.83 Total: 8.39 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -1.20 Total: 14.12 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.37 Total: -57.76 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.54 Total: -22.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.99 -7.07 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084083313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.812 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds