Wall clock time and date at job start Wed Apr 1 2020 00:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 113.99997 * 2 1 4 4 C 1.53003 * 109.47397 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46736 * 65.00083 * 4 3 2 6 6 C 1.46493 * 119.99878 * 273.96649 * 5 4 3 7 7 C 1.50705 * 109.47197 * 263.71633 * 6 5 4 8 8 H 1.08001 * 119.99729 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00008 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00393 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00100 * 180.02562 * 9 7 6 12 12 H 1.48510 * 109.46796 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47394 * 119.99545 * 11 9 7 14 14 H 1.48501 * 109.47313 * 240.00039 * 11 9 7 15 15 C 1.34773 * 119.99708 * 93.97098 * 5 4 3 16 16 O 1.21355 * 120.00576 * 354.60219 * 15 5 4 17 17 C 1.49373 * 119.99905 * 174.60565 * 15 5 4 18 18 O 1.21368 * 119.99880 * 0.24651 * 17 15 5 19 19 N 1.34774 * 120.00102 * 180.23816 * 17 15 5 20 20 C 1.39394 * 120.00142 * 184.96438 * 19 17 15 21 21 C 1.39498 * 120.85492 * 325.32123 * 20 19 17 22 22 C 1.37892 * 119.09775 * 180.02562 * 21 20 19 23 23 N 1.32004 * 120.86120 * 0.02562 * 22 21 20 24 24 C 1.32047 * 121.88825 * 359.66764 * 23 22 21 25 25 Cl 1.73598 * 119.59757 * 180.33509 * 24 23 22 26 26 C 1.38143 * 120.80548 * 0.62294 * 24 23 22 27 27 H 1.08999 * 109.47110 * 299.99351 * 1 2 3 28 28 H 1.08996 * 109.47591 * 60.00180 * 1 2 3 29 29 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47050 * 60.00174 * 3 2 1 31 31 H 1.08997 * 109.47443 * 300.00092 * 3 2 1 32 32 H 1.08997 * 109.47348 * 305.00179 * 4 3 2 33 33 H 1.08999 * 109.47348 * 185.00228 * 4 3 2 34 34 H 1.08994 * 109.47409 * 23.71720 * 6 5 4 35 35 H 1.09006 * 109.47263 * 143.71978 * 6 5 4 36 36 H 0.96992 * 120.00258 * 180.02562 * 10 9 7 37 37 H 0.97001 * 120.00420 * 4.97108 * 19 17 15 38 38 H 1.07993 * 120.45136 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.57008 * 180.02562 * 22 21 20 40 40 H 1.07992 * 120.46972 * 179.68492 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0230 -0.8955 -1.3682 7 6 5.4228 -1.3778 -1.0872 8 1 6.2001 -0.6681 -0.8451 9 6 5.7113 -2.7251 -1.1392 10 7 4.7649 -3.5893 -1.4346 11 14 7.4462 -3.3230 -0.7903 12 1 8.3187 -2.1603 -0.4864 13 1 7.4273 -4.2456 0.3731 14 1 7.9722 -4.0381 -1.9807 15 6 4.3398 1.3358 -2.2944 16 8 4.2091 2.5407 -2.2325 17 6 4.9033 0.7081 -3.5272 18 8 5.0299 -0.4973 -3.5909 19 7 5.2711 1.4803 -4.5688 20 6 5.6994 0.8902 -5.7568 21 6 6.4253 -0.3009 -5.7429 22 6 6.8315 -0.8527 -6.9396 23 7 6.5423 -0.2684 -8.0874 24 6 5.8524 0.8561 -8.1433 25 17 5.4981 1.5688 -9.6861 26 6 5.4143 1.4755 -6.9889 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0903 34 1 3.3345 -1.3398 -0.6494 35 1 3.7336 -1.1884 -2.3775 36 1 4.9677 -4.5371 -1.4708 37 1 5.2378 2.4466 -4.4918 38 1 6.6667 -0.7839 -4.8076 39 1 7.3935 -1.7749 -6.9377 40 1 4.8549 2.3978 -7.0408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120868889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:49 Heat of formation + Delta-G solvation = -79.670200 kcal Electronic energy + Delta-G solvation = -27635.306846 eV Core-core repulsion = 23476.673798 eV Total energy + Delta-G solvation = -4158.633048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -42.30465 -41.11471 -39.67673 -38.68699 -37.74311 -37.22704 -36.03966 -34.53165 -32.23175 -32.08246 -31.42113 -28.98999 -27.40897 -26.46875 -24.86034 -24.83951 -24.33222 -22.77300 -20.99076 -19.44311 -18.76535 -18.55408 -17.95097 -17.59311 -17.16812 -17.08549 -16.89973 -16.68450 -16.34999 -16.05753 -15.87662 -15.80085 -15.48200 -15.04574 -14.88712 -14.65143 -14.24667 -13.64026 -13.44107 -13.30461 -13.10903 -12.86641 -12.81894 -12.76428 -12.68514 -12.40915 -12.34387 -12.08698 -12.05159 -11.82647 -11.62373 -10.97300 -10.61953 -10.57823 -10.19924 -10.07849 -9.89665 -9.59096 -8.08512 -6.17143 -0.21279 -0.14649 0.50853 0.67351 1.31579 1.41151 1.43478 1.52931 2.14490 2.40090 2.54174 2.57684 2.94460 3.25705 3.30405 3.44945 3.76162 3.85240 4.02852 4.11429 4.18879 4.37934 4.38978 4.51677 4.53349 4.54607 4.58406 4.85586 4.86206 4.88002 5.00501 5.03437 5.40638 5.49472 5.56811 5.82631 5.97602 6.16554 6.25233 6.37580 6.61898 6.68501 6.86562 7.02485 7.48575 8.99880 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.003821 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.484094 B = 7326.063541 C = 9290.179846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.052 3.948 4 C 0.110 3.890 5 N -0.556 5.556 6 C 0.257 3.743 7 C -0.516 4.516 8 H 0.047 0.953 9 C 0.024 3.976 10 N -0.921 5.921 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.506 3.494 16 O -0.555 6.555 17 C 0.490 3.510 18 O -0.457 6.457 19 N -0.641 5.641 20 C 0.203 3.797 21 C -0.185 4.185 22 C 0.138 3.862 23 N -0.507 5.507 24 C 0.182 3.818 25 Cl -0.018 7.018 26 C -0.172 4.172 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.434 0.566 38 H 0.141 0.859 39 H 0.190 0.810 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 12.361 -5.976 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.025 4.025 4 C -0.012 4.012 5 N -0.285 5.285 6 C 0.137 3.863 7 C -0.555 4.555 8 H 0.065 0.935 9 C -0.176 4.176 10 N -0.561 5.561 11 Si 0.775 3.225 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.207 1.207 15 C 0.288 3.712 16 O -0.437 6.437 17 C 0.272 3.728 18 O -0.326 6.326 19 N -0.290 5.290 20 C 0.099 3.901 21 C -0.207 4.207 22 C -0.018 4.018 23 N -0.221 5.221 24 C 0.018 3.982 25 Cl 0.010 6.990 26 C -0.196 4.196 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.274 0.726 38 H 0.159 0.841 39 H 0.206 0.794 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.288 11.405 -6.781 13.465 hybrid contribution 0.290 0.229 0.884 0.958 sum -1.998 11.634 -5.897 13.195 Atomic orbital electron populations 1.22860 0.79951 1.03232 1.00740 1.88026 1.21211 1.28430 1.95519 1.22968 0.93059 0.84869 1.01573 1.21821 0.93502 1.00200 0.85658 1.48176 1.58990 1.09500 1.11875 1.19385 0.96306 0.72767 0.97891 1.21432 0.95311 0.92147 1.46636 0.93479 1.25491 1.00158 0.96845 0.95070 1.70046 1.34042 1.02323 1.49700 0.85664 0.80843 0.78304 0.77733 1.19447 1.20557 1.20741 1.19719 0.80175 0.86455 0.84809 1.90650 1.57082 1.13624 1.82338 1.20546 0.80020 0.87291 0.84955 1.91016 1.47955 1.14209 1.79396 1.42960 1.64070 1.11831 1.10185 1.17935 0.92645 0.93785 0.85767 1.22494 0.99075 0.97431 1.01721 1.22846 0.95209 0.98765 0.84951 1.67089 1.14414 1.09706 1.30858 1.21480 0.96592 0.92297 0.87858 1.98399 1.92619 1.80631 1.27328 1.21680 1.04652 1.04686 0.88566 0.92076 0.93919 0.89690 0.89194 0.93584 0.89381 0.87114 0.95464 0.94785 0.92959 0.72577 0.84090 0.79366 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -13.88 9.27 -148.98 -1.38 -15.26 16 3 C 0.05 1.49 6.28 71.98 0.45 1.94 16 4 C 0.11 3.60 5.83 86.38 0.50 4.10 16 5 N -0.56 -22.59 2.46 -827.83 -2.03 -24.62 16 6 C 0.26 12.77 4.51 85.64 0.39 13.15 16 7 C -0.52 -27.54 7.79 25.60 0.20 -27.34 16 8 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 9 C 0.02 1.30 5.46 84.65 0.46 1.76 16 10 N -0.92 -53.50 13.29 21.45 0.28 -53.22 16 11 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 C 0.51 19.41 7.67 87.25 0.67 20.08 16 16 O -0.56 -20.10 16.05 -3.26 -0.05 -20.15 16 17 C 0.49 18.51 7.59 87.25 0.66 19.17 16 18 O -0.46 -20.73 9.59 -3.30 -0.03 -20.77 16 19 N -0.64 -18.50 5.33 -304.32 -1.62 -20.12 16 20 C 0.20 5.73 6.34 38.51 0.24 5.97 16 21 C -0.18 -5.74 8.78 22.49 0.20 -5.54 16 22 C 0.14 3.79 11.17 84.58 0.94 4.74 16 23 N -0.51 -14.22 10.34 -186.96 -1.93 -16.15 16 24 C 0.18 4.59 7.27 84.64 0.62 5.21 16 25 Cl -0.02 -0.39 29.10 -2.72 -0.08 -0.47 16 26 C -0.17 -4.01 9.83 22.52 0.22 -3.78 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.09 2.96 8.10 -2.39 -0.02 2.94 16 33 H 0.11 3.17 7.38 -2.39 -0.02 3.16 16 34 H 0.03 1.47 6.90 -2.39 -0.02 1.46 16 35 H 0.03 1.89 5.84 -2.38 -0.01 1.88 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.43 10.04 8.30 -92.71 -0.77 9.27 16 38 H 0.14 5.14 6.29 -2.91 -0.02 5.12 16 39 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -67.02 361.57 2.31 -64.70 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.33 Total: 19.31 kcal Atomic # 6 Polarization: 34.58 SS G_CDS: 6.81 Total: 41.39 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -5.30 Total: -114.11 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -1.47 Total: -56.17 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -67.02 2.31 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120868889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -67.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds