Wall clock time and date at job start Wed Apr 1 2020 00:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46867 * 2 1 4 4 C 1.34231 * 116.99984 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99594 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00334 * 180.02562 * 4 3 2 7 7 N 1.46492 * 109.47401 * 180.02562 * 6 4 3 8 8 C 1.46498 * 120.00105 * 269.99642 * 7 6 4 9 9 C 1.50694 * 109.47780 * 269.99972 * 8 7 6 10 10 H 1.08000 * 119.99573 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00457 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99990 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00116 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47414 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47131 * 120.00309 * 13 11 9 16 16 H 1.48508 * 109.47009 * 240.00069 * 13 11 9 17 17 C 1.39098 * 119.99945 * 90.00287 * 7 6 4 18 18 C 1.39064 * 119.62550 * 184.99801 * 17 7 6 19 19 C 1.39552 * 118.94723 * 179.97438 * 18 17 7 20 20 C 1.48091 * 120.89128 * 179.97438 * 19 18 17 21 21 N 1.34782 * 119.99802 * 0.02562 * 20 19 18 22 22 O 1.21514 * 119.99987 * 180.02562 * 20 19 18 23 23 C 1.40123 * 118.21790 * 0.02562 * 19 18 17 24 24 Cl 1.73599 * 120.42935 * 179.97438 * 23 19 18 25 25 C 1.38111 * 119.13610 * 0.28036 * 23 19 18 26 26 N 1.31901 * 120.97648 * 359.44237 * 25 23 19 27 27 H 1.08996 * 109.46756 * 59.99962 * 1 2 3 28 28 H 1.08999 * 109.46649 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47290 * 299.99633 * 1 2 3 30 30 H 1.09000 * 109.47129 * 239.99901 * 2 1 3 31 31 H 1.09003 * 109.47116 * 119.99984 * 2 1 3 32 32 H 1.09000 * 109.47111 * 60.00225 * 6 4 3 33 33 H 1.09010 * 109.47318 * 300.00851 * 6 4 3 34 34 H 1.09007 * 109.46865 * 30.00702 * 8 7 6 35 35 H 1.09007 * 109.47304 * 149.99707 * 8 7 6 36 36 H 0.96998 * 120.00172 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.52685 * 359.97438 * 18 17 7 38 38 H 0.96997 * 120.00339 * 0.02562 * 21 20 19 39 39 H 0.97002 * 119.99542 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.50857 * 179.70187 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3836 2.8608 0.0010 8 6 6.1152 2.8220 1.2697 9 6 6.4405 4.2274 1.7054 10 1 6.1326 5.0658 1.0982 11 6 7.1301 4.4430 2.8796 12 7 7.5046 3.4221 3.6193 13 14 7.5326 6.1853 3.4200 14 1 7.0053 7.1481 2.4198 15 1 6.9077 6.4507 4.7408 16 1 9.0054 6.3421 3.5287 17 6 6.0781 2.8250 -1.2036 18 6 7.4573 2.6473 -1.1970 19 6 8.1398 2.6131 -2.4138 20 6 9.6083 2.4267 -2.4569 21 7 10.3037 2.2868 -1.3109 22 8 10.1862 2.3999 -3.5255 23 6 7.3984 2.7610 -3.5936 24 17 8.1891 2.7280 -5.1388 25 6 6.0314 2.9396 -3.5109 26 7 5.4191 2.9615 -2.3428 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5845 3.4693 0.8912 33 1 3.5850 3.4699 -0.8888 34 1 5.5001 2.3392 2.0292 35 1 7.0395 2.2590 1.1391 36 1 7.9901 3.5738 4.4452 37 1 7.9918 2.5376 -0.2650 38 1 9.8424 2.3078 -0.4579 39 1 11.2656 2.1643 -1.3392 40 1 5.4548 3.0591 -4.4162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157150669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:53 Heat of formation + Delta-G solvation = -77.594783 kcal Electronic energy + Delta-G solvation = -27445.915999 eV Core-core repulsion = 23287.372949 eV Total energy + Delta-G solvation = -4158.543051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.51827 -40.02007 -38.73723 -36.84734 -36.15196 -35.51177 -33.77372 -32.94032 -31.93294 -31.79915 -30.10434 -28.71562 -26.22556 -24.59142 -23.59242 -23.15013 -21.71472 -21.11191 -19.83609 -18.09805 -17.60208 -17.22475 -16.74854 -16.53102 -16.09638 -15.90506 -15.63366 -15.49235 -14.82069 -14.72436 -14.48878 -14.05199 -13.87964 -13.59171 -13.30235 -13.13772 -12.83911 -12.60702 -12.26808 -12.07770 -11.77623 -11.57672 -11.56941 -11.43141 -11.10230 -10.94480 -10.85280 -10.43929 -10.43342 -10.30143 -9.96961 -9.94296 -9.62179 -9.49578 -9.17738 -9.08301 -8.71533 -7.13136 -6.30693 -4.41796 0.94436 1.44250 2.49147 2.54707 2.74387 3.13227 3.14890 3.23111 3.26970 3.48453 3.63854 4.12229 4.22572 4.63958 4.88682 4.89458 4.89666 5.00766 5.03646 5.13202 5.23719 5.24096 5.47776 5.63917 5.70892 5.74599 5.79251 5.84010 5.88333 6.04818 6.41859 6.62984 6.75098 6.88884 7.00121 7.33449 7.44429 7.64081 7.82352 7.86437 8.08506 8.30358 8.36277 8.67897 9.26952 10.73524 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.006597 B = 0.005179 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4243.178134 B = 5404.673996 C = 8755.474980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.443 3.557 5 O -0.500 6.500 6 C 0.139 3.861 7 N -0.565 5.565 8 C 0.252 3.748 9 C -0.543 4.543 10 H 0.065 0.935 11 C 0.067 3.933 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.423 3.577 18 C -0.172 4.172 19 C -0.052 4.052 20 C 0.564 3.436 21 N -0.846 5.846 22 O -0.522 6.522 23 C -0.119 4.119 24 Cl -0.047 7.047 25 C 0.159 3.841 26 N -0.530 5.530 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.155 0.845 38 H 0.407 0.593 39 H 0.404 0.596 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -3.436 -7.600 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.284 3.716 5 O -0.386 6.386 6 C 0.013 3.987 7 N -0.273 5.273 8 C 0.134 3.866 9 C -0.581 4.581 10 H 0.084 0.916 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.186 3.814 18 C -0.198 4.198 19 C -0.064 4.064 20 C 0.349 3.651 21 N -0.410 5.410 22 O -0.397 6.397 23 C -0.153 4.153 24 Cl -0.018 7.018 25 C 0.000 4.000 26 N -0.249 5.249 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.172 0.828 38 H 0.238 0.762 39 H 0.235 0.765 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.877 -3.695 -8.061 11.221 hybrid contribution 1.357 0.498 0.872 1.688 sum -5.520 -3.197 -7.189 9.611 Atomic orbital electron populations 1.21788 0.92899 1.02642 1.03442 1.22934 0.95072 0.80921 1.02347 1.86510 1.25136 1.31846 1.84502 1.24965 0.80243 0.94217 0.72172 1.90649 1.60327 1.43037 1.44578 1.20787 0.81770 0.89505 1.06687 1.46820 1.03119 1.73256 1.04108 1.19525 0.92204 0.97591 0.77309 1.21551 1.37279 0.92282 1.07031 0.91647 1.24938 0.95196 0.97522 0.96008 1.69935 1.38254 1.30192 1.14292 0.86431 0.78265 0.84075 0.78681 1.19566 1.20774 1.20754 1.18281 0.88178 0.88790 0.86120 1.21783 0.94058 1.05873 0.98037 1.19816 0.93622 1.00501 0.92429 1.18065 0.86603 0.76275 0.84199 1.43774 1.12004 1.76148 1.09121 1.90857 1.70700 1.49293 1.28883 1.21561 0.93746 1.12615 0.87351 1.98352 1.80422 1.96975 1.26049 1.22231 0.89325 0.93299 0.95192 1.67130 1.39690 1.20785 0.97275 0.91556 0.90577 0.91488 0.91601 0.91472 0.85998 0.86153 0.94163 0.94215 0.92368 0.82773 0.76189 0.76464 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.31 10.22 -39.26 -0.40 -5.72 16 4 C 0.44 7.57 8.03 36.00 0.29 7.86 16 5 O -0.50 -10.07 16.18 -18.75 -0.30 -10.37 16 6 C 0.14 2.29 6.06 -5.20 -0.03 2.26 16 7 N -0.56 -10.90 2.06 -176.60 -0.36 -11.27 16 8 C 0.25 5.59 5.00 -5.20 -0.03 5.56 16 9 C -0.54 -12.97 9.39 -34.44 -0.32 -13.30 16 10 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -22.94 13.29 55.43 0.74 -22.20 16 13 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 C 0.42 7.94 7.37 -155.03 -1.14 6.80 16 18 C -0.17 -3.07 8.77 -38.79 -0.34 -3.41 16 19 C -0.05 -0.90 5.91 -104.66 -0.62 -1.51 16 20 C 0.56 9.27 8.06 -12.21 -0.10 9.17 16 21 N -0.85 -11.01 8.83 30.59 0.27 -10.74 16 22 O -0.52 -9.65 14.99 5.35 0.08 -9.57 16 23 C -0.12 -1.96 6.38 -38.92 -0.25 -2.21 16 24 Cl -0.05 -0.73 26.22 -51.86 -1.36 -2.09 16 25 C 0.16 2.45 10.97 -17.57 -0.19 2.26 16 26 N -0.53 -9.18 9.04 -12.44 -0.11 -9.30 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 32 H 0.12 1.87 8.07 -51.93 -0.42 1.45 16 33 H 0.12 1.80 7.30 -51.92 -0.38 1.42 16 34 H 0.04 0.96 8.07 -51.93 -0.42 0.55 16 35 H 0.04 0.91 5.97 -51.92 -0.31 0.60 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.15 2.74 4.49 -52.49 -0.24 2.50 16 38 H 0.41 5.07 6.97 -40.82 -0.28 4.79 16 39 H 0.40 4.35 8.93 -40.82 -0.36 3.99 16 40 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -30.08 364.24 -7.70 -37.78 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.49 Total: 8.54 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -2.22 Total: 15.09 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.53 Total: -53.51 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.62 Total: -25.66 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.36 Total: -2.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.08 -7.70 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157150669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.815 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds