Wall clock time and date at job start Wed Apr 1 2020 00:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47081 * 2 1 4 4 C 1.34227 * 117.00252 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00332 * 179.97438 * 4 3 2 7 7 N 1.46492 * 109.47347 * 180.02562 * 6 4 3 8 8 C 1.46508 * 119.99823 * 270.00140 * 7 6 4 9 9 C 1.50700 * 109.46706 * 269.99813 * 8 7 6 10 10 H 1.07997 * 120.00395 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99275 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99615 * 180.02562 * 11 9 8 13 13 Si 1.86789 * 120.00410 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47302 * 90.00438 * 13 11 9 15 15 H 1.48510 * 109.47301 * 210.00048 * 13 11 9 16 16 H 1.48505 * 109.47421 * 330.00282 * 13 11 9 17 17 C 1.39020 * 120.00421 * 89.99802 * 7 6 4 18 18 C 1.39080 * 119.63883 * 184.99839 * 17 7 6 19 19 C 1.39537 * 118.96321 * 180.02562 * 18 17 7 20 20 C 1.48164 * 120.87514 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00060 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00248 * 0.02562 * 20 19 18 23 23 C 1.39963 * 118.24973 * 359.97438 * 19 18 17 24 24 C 1.38127 * 119.16252 * 0.28125 * 23 19 18 25 25 Cl 1.73600 * 119.51714 * 179.69746 * 24 23 19 26 26 N 1.32011 * 120.96635 * 359.44257 * 24 23 19 27 27 H 1.08999 * 109.47218 * 59.99939 * 1 2 3 28 28 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46631 * 299.99987 * 1 2 3 30 30 H 1.08995 * 109.47286 * 240.00286 * 2 1 3 31 31 H 1.08999 * 109.47218 * 120.00060 * 2 1 3 32 32 H 1.08997 * 109.46533 * 59.99624 * 6 4 3 33 33 H 1.09000 * 109.47110 * 300.00134 * 6 4 3 34 34 H 1.08992 * 109.46937 * 30.00090 * 8 7 6 35 35 H 1.08997 * 109.46946 * 150.00090 * 8 7 6 36 36 H 0.97002 * 120.00492 * 179.97438 * 12 11 9 37 37 H 1.07994 * 120.52043 * 359.97438 * 18 17 7 38 38 H 0.96993 * 119.99726 * 0.02562 * 21 20 19 39 39 H 0.96998 * 119.99564 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.41534 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9207 2.9375 -0.0012 7 7 5.3836 2.8609 -0.0023 8 6 6.1161 2.8227 1.2660 9 6 6.4416 4.2285 1.7005 10 1 6.1333 5.0666 1.0931 11 6 7.1330 4.4447 2.8737 12 7 7.4166 5.6715 3.2532 13 14 7.6655 2.9953 3.9247 14 1 9.0167 2.5473 3.5020 15 1 7.7041 3.4059 5.3514 16 1 6.6992 1.8802 3.7565 17 6 6.0769 2.8243 -1.2067 18 6 7.4563 2.6466 -1.2012 19 6 8.1381 2.6127 -2.4182 20 6 9.6073 2.4261 -2.4616 21 7 10.2481 2.3966 -3.6470 22 8 10.2346 2.2998 -1.4286 23 6 7.3975 2.7594 -3.5967 24 6 6.0302 2.9372 -3.5147 25 17 5.1037 3.1281 -4.9704 26 7 5.4170 2.9590 -2.3459 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5850 3.4698 0.8888 33 1 3.5844 3.4694 -0.8912 34 1 5.5016 2.3405 2.0260 35 1 7.0402 2.2598 1.1350 36 1 7.9026 5.8238 4.0788 37 1 7.9915 2.5375 -0.2696 38 1 9.7475 2.4978 -4.4716 39 1 11.2100 2.2748 -3.6754 40 1 7.8897 2.7390 -4.5579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:11 Heat of formation + Delta-G solvation = -77.252693 kcal Electronic energy + Delta-G solvation = -27432.511210 eV Core-core repulsion = 23273.982994 eV Total energy + Delta-G solvation = -4158.528217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 12.96 seconds Orbital eigenvalues (eV) -40.61335 -40.09145 -38.88700 -37.06442 -36.44058 -35.65898 -33.90065 -32.80489 -32.13184 -31.83634 -30.24917 -29.11804 -26.54484 -24.64178 -23.46050 -23.16692 -21.47670 -21.18334 -19.92376 -18.28554 -17.67498 -17.31814 -16.96582 -16.70233 -16.38407 -15.86352 -15.68816 -15.41667 -14.90100 -14.87077 -14.39078 -14.21764 -14.08595 -13.77616 -13.63009 -13.23563 -12.86046 -12.53909 -12.20337 -12.12052 -11.95491 -11.65643 -11.59426 -11.45306 -11.29365 -11.08270 -10.69135 -10.54510 -10.46562 -10.26136 -10.17993 -9.89054 -9.76815 -9.64948 -9.44625 -9.15758 -8.72528 -7.21761 -6.22963 -4.26040 0.89049 1.32264 1.83826 2.49832 2.67138 3.01773 3.22345 3.28272 3.31537 3.34739 3.52341 4.04153 4.27906 4.65628 4.86551 4.86605 4.94301 5.00555 5.07536 5.11256 5.15677 5.21138 5.39720 5.49586 5.61708 5.68986 5.74723 5.86386 5.89262 6.11569 6.37096 6.53563 6.59081 6.64518 6.72756 7.16375 7.23402 7.37582 7.69875 8.01304 8.12250 8.19974 8.35189 8.81336 9.35093 10.89196 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.006236 B = 0.005875 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4488.707812 B = 4764.521173 C = 8150.892155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.444 3.556 5 O -0.502 6.502 6 C 0.138 3.862 7 N -0.558 5.558 8 C 0.223 3.777 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.082 3.918 12 N -0.886 5.886 13 Si 0.865 3.135 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.443 3.557 18 C -0.147 4.147 19 C -0.049 4.049 20 C 0.568 3.432 21 N -0.849 5.849 22 O -0.521 6.521 23 C -0.205 4.205 24 C 0.224 3.776 25 Cl -0.042 7.042 26 N -0.539 5.539 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.162 0.838 38 H 0.401 0.599 39 H 0.405 0.595 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -8.187 -14.431 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.285 3.715 5 O -0.388 6.388 6 C 0.012 3.988 7 N -0.266 5.266 8 C 0.103 3.897 9 C -0.585 4.585 10 H 0.100 0.900 11 C -0.123 4.123 12 N -0.523 5.523 13 Si 0.692 3.308 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.188 1.188 17 C 0.206 3.794 18 C -0.173 4.173 19 C -0.060 4.060 20 C 0.353 3.647 21 N -0.414 5.414 22 O -0.396 6.396 23 C -0.231 4.231 24 C 0.060 3.940 25 Cl -0.014 7.014 26 N -0.260 5.260 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.179 0.821 38 H 0.231 0.769 39 H 0.236 0.764 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.602 -8.331 -13.376 17.085 hybrid contribution 1.188 -0.899 0.010 1.490 sum -5.414 -9.230 -13.366 17.122 Atomic orbital electron populations 1.21790 0.92831 1.02652 1.03512 1.22941 0.95139 0.80870 1.02320 1.86514 1.24988 1.31873 1.84411 1.24939 0.80318 0.94143 0.72107 1.90642 1.60356 1.43058 1.44771 1.20827 0.81249 0.89554 1.07171 1.46440 1.03259 1.73385 1.03478 1.19954 0.92261 0.98635 0.78869 1.21328 1.37921 0.91191 1.08020 0.90014 1.24799 0.94811 0.95608 0.97047 1.69872 1.39280 1.19700 1.23455 0.87005 0.80338 0.83174 0.80330 1.19368 1.20697 1.18847 1.17869 0.87814 0.88753 0.84916 1.21813 0.93229 1.02674 0.99614 1.19797 0.92999 0.99980 0.93206 1.18105 0.86901 0.75963 0.83732 1.43676 1.12226 1.77147 1.08360 1.90869 1.67683 1.48062 1.33030 1.21299 0.92491 1.10780 0.98504 1.20821 0.88070 0.97711 0.87432 1.98380 1.75421 1.95581 1.32017 1.66102 1.41117 1.22005 0.96790 0.91497 0.90562 0.91458 0.91581 0.91503 0.85609 0.85843 0.94330 0.94606 0.92224 0.82093 0.76902 0.76358 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.92 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -5.36 10.22 -39.25 -0.40 -5.76 16 4 C 0.44 7.69 8.03 36.01 0.29 7.98 16 5 O -0.50 -10.11 16.18 -18.75 -0.30 -10.41 16 6 C 0.14 2.37 6.06 -5.20 -0.03 2.34 16 7 N -0.56 -11.32 2.06 -176.62 -0.36 -11.68 16 8 C 0.22 5.08 4.07 -5.19 -0.02 5.06 16 9 C -0.55 -14.41 9.94 -34.44 -0.34 -14.76 16 10 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 11 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 12 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 13 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 17 C 0.44 8.74 7.37 -155.07 -1.14 7.60 16 18 C -0.15 -2.88 8.84 -38.79 -0.34 -3.23 16 19 C -0.05 -0.79 5.90 -104.69 -0.62 -1.41 16 20 C 0.57 8.72 8.07 -12.18 -0.10 8.62 16 21 N -0.85 -8.15 8.83 30.60 0.27 -7.88 16 22 O -0.52 -10.30 17.28 5.35 0.09 -10.21 16 23 C -0.21 -2.78 9.37 -38.98 -0.37 -3.15 16 24 C 0.22 3.44 7.26 -17.52 -0.13 3.32 16 25 Cl -0.04 -0.54 29.10 -51.86 -1.51 -2.04 16 26 N -0.54 -9.67 9.02 -9.60 -0.09 -9.75 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.13 2.01 8.07 -51.93 -0.42 1.59 16 33 H 0.12 1.96 7.29 -51.93 -0.38 1.58 16 34 H 0.04 0.88 7.13 -51.93 -0.37 0.51 16 35 H 0.04 0.83 5.40 -51.93 -0.28 0.55 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.16 3.47 5.70 -52.49 -0.30 3.17 16 38 H 0.40 2.63 6.97 -40.82 -0.28 2.35 16 39 H 0.41 3.18 8.93 -40.82 -0.36 2.82 16 40 H 0.14 1.27 6.53 -52.49 -0.34 0.93 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -33.79 364.81 -7.43 -41.21 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.44 Total: 5.75 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -2.29 Total: 14.57 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.59 Total: -54.47 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.61 Total: -26.38 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.79 -7.43 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.039 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.96 seconds