Wall clock time and date at job start Tue Mar 31 2020 23:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47070 * 2 1 4 4 N 1.46900 * 109.46791 * 120.00461 * 2 1 3 5 5 C 1.46907 * 110.99730 * 209.66787 * 4 2 1 6 6 H 1.08996 * 109.46882 * 320.46284 * 5 4 2 7 7 C 1.52998 * 109.47163 * 80.46428 * 5 4 2 8 8 C 1.50697 * 109.47143 * 200.46419 * 5 4 2 9 9 H 1.08006 * 119.99752 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00112 * 180.27750 * 8 5 4 11 11 N 1.31514 * 119.99859 * 359.72222 * 10 8 5 12 12 Si 1.86804 * 120.00245 * 179.72589 * 10 8 5 13 13 H 1.48492 * 109.47166 * 59.99834 * 12 10 8 14 14 H 1.48501 * 109.47089 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46954 * 299.99537 * 12 10 8 16 16 C 1.50707 * 109.46944 * 239.99962 * 2 1 3 17 17 O 1.21288 * 119.99754 * 240.00035 * 16 2 1 18 18 N 1.34778 * 119.99756 * 60.00463 * 16 2 1 19 19 C 1.39975 * 119.99642 * 185.71703 * 18 16 2 20 20 C 1.38850 * 120.07932 * 33.95383 * 19 18 16 21 21 C 1.38114 * 119.94348 * 179.76896 * 20 19 18 22 22 N 1.48021 * 119.95556 * 180.23382 * 21 20 19 23 23 O 1.21796 * 120.00065 * 180.25237 * 22 21 20 24 24 O 1.21797 * 119.99688 * 0.24999 * 22 21 20 25 25 C 1.38290 * 120.09217 * 0.48154 * 21 20 19 26 26 C 1.38255 * 120.14985 * 359.77262 * 25 21 20 27 27 C 1.38227 * 120.05795 * 359.97438 * 26 25 21 28 28 Cl 1.73603 * 120.04712 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47411 * 295.00939 * 1 2 3 30 30 H 1.09004 * 109.47133 * 55.00800 * 1 2 3 31 31 H 1.09001 * 109.47884 * 175.00509 * 1 2 3 32 32 H 1.00900 * 111.00181 * 333.62344 * 4 2 1 33 33 H 1.09001 * 109.47094 * 65.12350 * 7 5 4 34 34 H 1.08998 * 109.47227 * 185.12436 * 7 5 4 35 35 H 1.08999 * 109.47029 * 305.12341 * 7 5 4 36 36 H 0.97001 * 120.00003 * 180.02562 * 11 10 8 37 37 H 0.96998 * 119.99910 * 5.71454 * 18 16 2 38 38 H 1.08005 * 120.02398 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.93052 * 179.74776 * 25 21 20 40 40 H 1.08011 * 119.97492 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.3186 -0.1543 1.6247 6 1 3.9311 0.0522 0.7472 7 6 3.1015 1.1399 2.4113 8 6 4.0180 -1.1625 2.4996 9 1 3.5450 -2.1087 2.7175 10 6 5.2594 -0.8749 3.0260 11 7 5.8355 0.2771 2.7603 12 14 6.1230 -2.1215 4.1167 13 1 6.3382 -3.3790 3.3569 14 1 7.4340 -1.5753 4.5506 15 1 5.2837 -2.4012 5.3094 16 6 2.0323 -0.7105 -1.2305 17 8 2.7296 -1.6966 -1.1192 18 7 1.7067 -0.2499 -2.4546 19 6 2.0715 -0.9750 -3.5950 20 6 2.1005 -2.3627 -3.5575 21 6 2.4562 -3.0755 -4.6857 22 7 2.4822 -4.5550 -4.6476 23 8 2.8002 -5.1843 -5.6407 24 8 2.1856 -5.1430 -3.6231 25 6 2.7931 -2.4088 -5.8495 26 6 2.7706 -1.0270 -5.8896 27 6 2.4105 -0.3076 -4.7656 28 17 2.3830 1.4275 -4.8161 29 1 -0.3634 0.4345 0.9313 30 1 -0.3633 0.5893 -0.8419 31 1 -0.3635 -1.0237 -0.0895 32 1 1.3444 -0.6413 1.9475 33 1 2.5669 0.9184 3.3350 34 1 4.0667 1.5872 2.6485 35 1 2.5161 1.8362 1.8108 36 1 6.7090 0.4793 3.1303 37 1 1.2196 0.5840 -2.5453 38 1 1.8419 -2.8843 -2.6478 39 1 3.0748 -2.9687 -6.7291 40 1 3.0347 -0.5092 -6.8000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195659499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:52 Heat of formation + Delta-G solvation = -29.158427 kcal Electronic energy + Delta-G solvation = -27307.415361 eV Core-core repulsion = 23150.972668 eV Total energy + Delta-G solvation = -4156.442693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -43.39718 -41.93668 -40.14666 -37.92624 -37.83207 -37.75608 -36.17711 -35.00321 -32.92704 -32.61957 -31.06119 -28.54919 -27.77564 -27.22449 -25.84817 -24.22326 -23.43103 -22.35854 -21.35087 -20.71158 -19.82755 -18.74053 -18.58877 -18.27071 -18.12098 -17.84993 -17.10930 -16.80659 -15.96617 -15.93155 -15.58434 -15.30790 -15.15967 -14.74223 -14.16054 -14.14872 -13.88461 -13.63235 -13.33376 -13.30903 -13.08478 -13.04379 -12.84463 -12.83717 -12.47096 -12.43280 -12.38561 -12.36607 -12.30098 -12.16590 -11.93705 -11.77040 -11.16707 -10.91998 -10.52606 -10.50997 -9.68812 -9.03576 -8.12876 -6.21358 -1.47412 -0.36344 0.02208 0.17725 0.63354 1.38210 1.41386 1.42987 1.48355 1.63860 2.04141 2.41605 3.14154 3.16664 3.29259 3.40897 3.56389 3.64348 3.74598 4.00319 4.17597 4.21854 4.28975 4.46619 4.62111 4.70346 4.76783 4.83551 4.84923 4.87134 5.03703 5.07631 5.18945 5.27023 5.39327 5.68410 5.78970 6.09171 6.26054 6.37283 6.58772 6.78371 6.92487 7.02401 7.47459 8.92988 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.003495 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.080181 B = 8008.531944 C = 9343.185605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.080 0.920 4 N -0.676 5.676 5 C 0.225 3.775 6 H -0.008 1.008 7 C -0.154 4.154 8 C -0.513 4.513 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.921 5.921 12 Si 0.954 3.046 13 H -0.284 1.284 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.513 3.487 17 O -0.528 6.528 18 N -0.662 5.662 19 C 0.161 3.839 20 C -0.072 4.072 21 C -0.036 4.036 22 N 0.029 4.971 23 O -0.121 6.121 24 O -0.222 6.222 25 C -0.050 4.050 26 C -0.068 4.068 27 C -0.019 4.019 28 Cl -0.017 7.017 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.347 0.653 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.430 0.570 38 H 0.140 0.860 39 H 0.194 0.806 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 6.054 -20.878 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 H 0.097 0.903 4 N -0.308 5.308 5 C 0.117 3.883 6 H 0.010 0.990 7 C -0.214 4.214 8 C -0.552 4.552 9 H 0.066 0.934 10 C -0.187 4.187 11 N -0.561 5.561 12 Si 0.780 3.220 13 H -0.210 1.210 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.301 3.699 17 O -0.401 6.401 18 N -0.312 5.312 19 C 0.063 3.937 20 C -0.094 4.094 21 C -0.120 4.120 22 N 0.546 4.454 23 O -0.350 6.350 24 O -0.423 6.423 25 C -0.070 4.070 26 C -0.087 4.087 27 C -0.049 4.049 28 Cl 0.012 6.988 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.271 0.729 38 H 0.158 0.842 39 H 0.211 0.789 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.819 5.806 -20.843 24.654 hybrid contribution 0.456 0.064 1.395 1.469 sum -11.363 5.870 -19.448 23.277 Atomic orbital electron populations 1.21967 0.89190 1.03578 1.05179 1.21459 0.98028 0.95872 0.89124 0.90279 1.60099 1.05465 1.58679 1.06587 1.18857 0.85646 0.91221 0.92576 0.99023 1.22236 1.01246 0.98779 0.99143 1.21374 1.02668 1.02086 1.29082 0.93399 1.25625 0.97889 0.97167 0.98044 1.69989 1.16346 1.23397 1.46417 0.85675 0.77886 0.79090 0.79335 1.21005 1.20597 1.19098 1.21790 0.78644 0.84608 0.84874 1.90774 1.35591 1.27388 1.86324 1.43601 1.57906 1.26780 1.02924 1.17195 0.99537 0.89316 0.87626 1.20754 0.97396 0.93178 0.98101 1.21115 1.13719 0.78369 0.98771 1.43812 0.97372 1.04354 0.99881 1.94446 1.47554 1.67931 1.25095 1.94645 1.54352 1.71376 1.21903 1.21375 0.94538 0.94727 0.96350 1.21397 0.97078 0.91506 0.98686 1.21328 1.01338 0.87453 0.94805 1.98434 1.96293 1.05672 1.98383 0.89544 0.88464 0.92046 0.83206 0.94530 0.92403 0.94316 0.93074 0.72888 0.84220 0.78904 0.77636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.06 71.98 0.65 -2.13 16 2 C 0.07 2.12 2.79 44.17 0.12 2.24 16 3 H 0.08 2.31 6.78 -2.39 -0.02 2.30 16 4 N -0.68 -27.77 5.54 -477.16 -2.64 -30.41 16 5 C 0.23 11.43 2.40 44.17 0.11 11.53 16 6 H -0.01 -0.48 7.85 -2.39 -0.02 -0.50 16 7 C -0.15 -7.04 8.87 71.98 0.64 -6.40 16 8 C -0.51 -29.76 8.84 25.60 0.23 -29.54 16 9 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 10 C 0.01 0.62 5.30 84.65 0.45 1.07 16 11 N -0.92 -54.28 11.37 21.44 0.24 -54.03 16 12 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 13 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 16 C 0.51 17.30 6.83 87.66 0.60 17.90 16 17 O -0.53 -24.13 14.18 -3.06 -0.04 -24.17 16 18 N -0.66 -15.57 4.94 -303.41 -1.50 -17.07 16 19 C 0.16 3.78 6.26 38.16 0.24 4.02 16 20 C -0.07 -2.07 8.16 22.39 0.18 -1.89 16 21 C -0.04 -0.90 6.85 36.36 0.25 -0.65 16 22 N 0.03 0.87 4.45 -46.50 -0.21 0.67 16 23 O -0.12 -3.34 18.44 18.89 0.35 -2.99 16 24 O -0.22 -8.18 18.44 18.89 0.35 -7.83 16 25 C -0.05 -0.75 9.55 22.29 0.21 -0.53 16 26 C -0.07 -0.75 9.82 22.27 0.22 -0.53 16 27 C -0.02 -0.31 6.34 22.44 0.14 -0.17 16 28 Cl -0.02 -0.23 27.95 -2.72 -0.08 -0.31 16 29 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 30 H 0.10 1.18 7.86 -2.38 -0.02 1.17 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.35 12.80 8.04 -89.69 -0.72 12.07 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 3.01 6.21 -2.39 -0.01 2.99 16 35 H 0.04 1.45 7.10 -2.39 -0.02 1.43 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.43 6.81 7.76 -92.71 -0.72 6.09 16 38 H 0.14 5.03 6.03 -2.91 -0.02 5.02 16 39 H 0.19 1.71 7.60 -2.91 -0.02 1.69 16 40 H 0.21 0.49 8.06 -2.90 -0.02 0.46 16 Total: -1.00 -78.74 360.98 2.22 -76.53 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.32 Total: 16.45 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.04 Total: -5.07 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -4.10 Total: -100.85 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: 0.65 Total: -34.99 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -78.74 2.22 -76.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195659499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.367 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds