Wall clock time and date at job start Wed Apr 1 2020 00:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45199 * 109.47190 * 2 1 4 4 C 1.34710 * 117.00188 * 180.02562 * 3 2 1 5 5 O 1.21467 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.47718 * 119.99933 * 179.97438 * 4 3 2 7 7 C 1.40098 * 121.17739 * 0.21786 * 6 4 3 8 8 C 1.38622 * 117.85981 * 180.22589 * 7 6 4 9 9 Cl 1.73603 * 119.94333 * 179.77280 * 8 7 6 10 10 N 1.31960 * 120.11177 * 359.79446 * 8 7 6 11 11 N 1.28277 * 122.62077 * 359.97392 * 10 8 7 12 12 C 1.32448 * 122.24502 * 0.02562 * 11 10 8 13 13 O 1.35454 * 120.24363 * 179.97438 * 12 11 10 14 14 C 1.42902 * 116.99785 * 359.97438 * 13 12 11 15 15 H 1.09000 * 110.64515 * 26.85979 * 14 13 12 16 16 C 1.55158 * 110.72296 * 150.00384 * 14 13 12 17 17 C 1.54910 * 101.58302 * 153.86468 * 16 14 13 18 18 N 1.47421 * 104.83090 * 322.99048 * 17 16 14 19 19 C 1.36934 * 125.64568 * 204.09223 * 18 17 16 20 20 H 1.08004 * 120.00035 * 163.19260 * 19 18 17 21 21 C 1.38812 * 120.00404 * 343.18775 * 19 18 17 22 22 N 1.31622 * 119.99728 * 331.97362 * 21 19 18 23 23 Si 1.86799 * 120.00267 * 151.97240 * 21 19 18 24 24 H 1.48506 * 109.46858 * 180.02562 * 23 21 19 25 25 H 1.48494 * 109.47388 * 60.00205 * 23 21 19 26 26 H 1.48501 * 109.46953 * 300.00008 * 23 21 19 27 27 C 1.47021 * 108.70506 * 24.35923 * 18 17 16 28 28 H 1.09002 * 109.47453 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47711 * 60.00364 * 1 2 3 30 30 H 1.09001 * 109.47306 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47453 * 240.00031 * 2 1 3 32 32 H 1.09003 * 109.47328 * 119.99958 * 2 1 3 33 33 H 1.07996 * 121.07103 * 0.02562 * 7 6 4 34 34 H 1.08994 * 111.00148 * 35.78648 * 16 14 13 35 35 H 1.09005 * 111.03353 * 271.95405 * 16 14 13 36 36 H 1.09000 * 110.36435 * 204.15016 * 17 16 14 37 37 H 1.09005 * 110.36581 * 81.83073 * 17 16 14 38 38 H 0.97004 * 120.00411 * 353.95791 * 22 21 19 39 39 H 1.09002 * 109.88500 * 118.13212 * 27 18 17 40 40 H 1.08999 * 109.87960 * 239.29526 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3494 1.5455 -0.0005 5 8 4.0894 0.5822 -0.0005 6 6 3.9140 2.9105 -0.0011 7 6 3.0835 4.0388 0.0034 8 6 3.6866 5.2870 -0.0023 9 17 2.7090 6.7216 -0.0031 10 7 5.0024 5.3865 -0.0076 11 7 5.7734 4.3613 -0.0073 12 6 5.3029 3.1233 -0.0021 13 8 6.1544 2.0698 -0.0024 14 6 7.5524 2.3657 -0.0092 15 1 7.7419 3.3369 0.4479 16 6 8.3528 1.2520 0.7164 17 6 9.7392 1.3716 0.0357 18 7 9.4418 1.6876 -1.3732 19 6 10.2660 1.4385 -2.4380 20 1 9.8690 1.4496 -3.4424 21 6 11.6118 1.1719 -2.2267 22 7 12.2233 1.6682 -1.1721 23 14 12.5550 0.1088 -3.4390 24 1 13.9640 -0.0239 -2.9890 25 1 12.5212 0.7408 -4.7823 26 1 11.9295 -1.2362 -3.5088 27 6 8.1166 2.3202 -1.4450 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0082 3.9394 0.0079 34 1 7.9115 0.2721 0.5346 35 1 8.4236 1.4541 1.7852 36 1 10.2795 0.4276 0.1069 37 1 10.3173 2.1758 0.4910 38 1 11.7591 2.2903 -0.5903 39 1 8.2095 3.3314 -1.8412 40 1 7.4579 1.7295 -2.0815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227965502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:04 Heat of formation + Delta-G solvation = -33.433074 kcal Electronic energy + Delta-G solvation = -27190.343057 eV Core-core repulsion = 23033.715001 eV Total energy + Delta-G solvation = -4156.628055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.88661 -40.43814 -39.22045 -37.28862 -36.99819 -36.56186 -34.12578 -32.66304 -32.03252 -31.57963 -29.26559 -27.71671 -26.61027 -25.04362 -24.08541 -23.59928 -21.95571 -20.86677 -20.36757 -19.00595 -18.53239 -18.12203 -17.54350 -17.13134 -17.05159 -16.21435 -15.86078 -15.19275 -14.89993 -14.64569 -14.43229 -13.93983 -13.79615 -13.76749 -13.25819 -13.21522 -13.07844 -12.40345 -12.39647 -12.31285 -12.16826 -12.04096 -11.87015 -11.65284 -11.12582 -10.98152 -10.91997 -10.85738 -10.71044 -10.56940 -10.53657 -10.29247 -10.00797 -9.94768 -9.55058 -9.21130 -8.43185 -6.98272 -6.11249 -3.16645 -0.32996 0.35597 1.17079 2.00817 2.04616 2.55366 2.99020 3.49521 3.51269 3.55593 3.73242 3.84951 4.01994 4.20476 4.51095 4.53453 4.56454 4.61005 4.74181 4.87999 5.01695 5.10526 5.21133 5.29472 5.32332 5.35758 5.49875 5.53312 5.59559 5.92776 5.97221 6.10172 6.24001 6.35496 6.53217 6.86637 6.96120 7.09351 7.32654 7.76075 8.01663 8.46301 8.98936 9.78876 10.31438 11.21324 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.002985 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.576513 B = 9379.141277 C =11066.845828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.513 3.487 5 O -0.459 6.459 6 C -0.137 4.137 7 C -0.009 4.009 8 C 0.057 3.943 9 Cl 0.002 6.998 10 N -0.155 5.155 11 N -0.269 5.269 12 C 0.327 3.673 13 O -0.250 6.250 14 C 0.063 3.937 15 H 0.102 0.898 16 C -0.129 4.129 17 C 0.146 3.854 18 N -0.598 5.598 19 C -0.337 4.337 20 H 0.066 0.934 21 C -0.024 4.024 22 N -0.915 5.915 23 Si 1.066 2.934 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.125 3.875 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.269 0.731 39 H 0.035 0.965 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.642 2.884 5.823 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.354 3.646 5 O -0.343 6.343 6 C -0.151 4.151 7 C -0.038 4.038 8 C -0.115 4.115 9 Cl 0.029 6.971 10 N -0.004 5.004 11 N -0.130 5.130 12 C 0.142 3.858 13 O -0.149 6.149 14 C 0.007 3.993 15 H 0.119 0.881 16 C -0.167 4.167 17 C 0.021 3.979 18 N -0.326 5.326 19 C -0.465 4.465 20 H 0.084 0.916 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.895 3.105 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.197 0.803 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.666 2.487 5.425 24.406 hybrid contribution -2.724 0.128 0.202 2.735 sum -26.390 2.614 5.627 27.110 Atomic orbital electron populations 1.21821 0.92241 1.03271 1.03612 1.23133 0.95422 0.79191 1.03260 1.86477 1.22936 1.33340 1.84578 1.20226 0.81216 0.88403 0.74762 1.90989 1.59973 1.40970 1.42405 1.19468 0.90924 0.92916 1.11749 1.22484 1.02901 0.88896 0.89523 1.23163 0.92063 0.89578 1.06705 1.98430 1.65902 1.35995 1.96729 1.72591 1.02094 1.22479 1.03218 1.73576 1.27176 0.94399 1.17819 1.21659 0.88457 0.89037 0.86618 1.86565 1.18989 1.26286 1.83096 1.23970 0.74531 1.01093 0.99669 0.88052 1.23043 0.96870 0.98133 0.98675 1.21570 0.91807 0.99695 0.84854 1.44426 1.15835 1.69203 1.03164 1.19742 0.91181 1.48897 0.86647 0.91623 1.25793 0.93045 1.01551 1.02167 1.70792 1.37804 1.29413 1.17593 0.83515 0.76065 0.76288 0.74612 1.21002 1.21956 1.22041 1.21611 0.89361 0.96851 0.92268 0.91368 0.91321 0.89933 0.90690 0.90758 0.80326 0.90090 0.90848 0.92101 0.94977 0.91969 0.94724 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.15 0.38 -0.33 16 2 C 0.06 0.49 6.19 37.15 0.23 0.72 16 3 O -0.36 -3.43 9.62 -40.52 -0.39 -3.82 16 4 C 0.51 6.51 7.92 34.60 0.27 6.79 16 5 O -0.46 -7.38 15.10 -26.36 -0.40 -7.77 16 6 C -0.14 -1.71 5.93 -104.47 -0.62 -2.33 16 7 C -0.01 -0.08 9.57 -38.74 -0.37 -0.45 16 8 C 0.06 0.62 7.36 -17.35 -0.13 0.49 16 9 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 10 N -0.16 -2.20 11.46 32.85 0.38 -1.82 16 11 N -0.27 -4.29 9.82 30.74 0.30 -3.99 16 12 C 0.33 5.08 7.59 -16.43 -0.12 4.95 16 13 O -0.25 -4.45 8.09 -39.25 -0.32 -4.76 16 14 C 0.06 1.20 3.25 -24.89 -0.08 1.12 16 15 H 0.10 1.87 6.98 -51.93 -0.36 1.50 16 16 C -0.13 -2.45 6.81 -24.58 -0.17 -2.62 16 17 C 0.15 3.46 5.30 -2.53 -0.01 3.44 16 18 N -0.60 -15.79 3.29 -170.07 -0.56 -16.35 16 19 C -0.34 -9.81 10.02 -15.06 -0.15 -9.96 16 20 H 0.07 1.91 7.97 -52.48 -0.42 1.49 16 21 C -0.02 -0.69 5.09 -17.43 -0.09 -0.78 16 22 N -0.92 -27.89 12.93 55.49 0.72 -27.17 16 23 Si 1.07 25.73 30.00 -169.99 -5.10 20.63 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.13 2.83 7.03 -3.06 -0.02 2.81 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.18 1.02 7.76 -52.49 -0.41 0.62 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.54 7.95 -51.93 -0.41 1.13 16 37 H 0.03 0.79 6.81 -51.93 -0.35 0.44 16 38 H 0.27 8.18 6.06 -40.82 -0.25 7.94 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -33.76 359.80 -7.13 -40.89 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.80 Total: -3.62 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.88 Total: 3.86 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.84 Total: -49.32 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.11 Total: -16.36 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.10 Total: 20.63 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.51 Total: -1.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.76 -7.13 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227965502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.456 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds