Wall clock time and date at job start Wed Apr 1 2020 00:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36356 * 125.64416 * 2 1 4 4 Br 1.89099 * 125.89448 * 0.02562 * 3 2 1 5 5 C 1.34943 * 108.20657 * 179.74272 * 3 2 1 6 6 C 1.40915 * 107.41797 * 0.43558 * 5 3 2 7 7 C 1.34830 * 107.43234 * 359.56006 * 6 5 3 8 8 C 1.50700 * 125.88926 * 180.26332 * 7 6 5 9 9 N 1.46896 * 109.47037 * 95.02904 * 8 7 6 10 10 C 1.46957 * 111.00333 * 293.80446 * 9 8 7 11 11 C 1.53051 * 109.36763 * 176.81089 * 10 9 8 12 12 N 1.46961 * 109.36212 * 58.39574 * 11 10 9 13 13 C 1.46905 * 110.99647 * 176.81084 * 12 11 10 14 14 C 1.50702 * 109.47262 * 293.80235 * 13 12 11 15 15 H 1.08004 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99968 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47587 * 89.99906 * 18 16 14 20 20 H 1.48507 * 109.47092 * 210.00276 * 18 16 14 21 21 H 1.48500 * 109.46995 * 329.99525 * 18 16 14 22 22 C 1.46951 * 110.88535 * 300.68100 * 12 11 10 23 23 C 1.46961 * 111.00166 * 169.99907 * 9 8 7 24 24 H 1.09000 * 109.47545 * 269.97569 * 1 2 3 25 25 H 1.09005 * 109.46949 * 29.97543 * 1 2 3 26 26 H 1.08997 * 109.47540 * 149.97268 * 1 2 3 27 27 H 1.07996 * 126.29295 * 180.27358 * 5 3 2 28 28 H 1.08002 * 126.28692 * 179.83435 * 6 5 3 29 29 H 1.09002 * 109.46969 * 215.03216 * 8 7 6 30 30 H 1.09002 * 109.46912 * 335.03263 * 8 7 6 31 31 H 1.09000 * 109.48319 * 296.77620 * 10 9 8 32 32 H 1.09000 * 109.49033 * 56.83946 * 10 9 8 33 33 H 1.08998 * 109.48538 * 298.43354 * 11 10 9 34 34 H 1.08995 * 109.48805 * 178.36514 * 11 10 9 35 35 H 1.08997 * 109.46909 * 53.80085 * 13 12 11 36 36 H 1.08994 * 109.46864 * 173.80465 * 13 12 11 37 37 H 0.96997 * 120.00143 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.48550 * 299.35561 * 22 12 11 39 39 H 1.08990 * 109.49042 * 179.29003 * 22 12 11 40 40 H 1.08995 * 109.49010 * 303.15686 * 23 9 8 41 41 H 1.09002 * 109.48527 * 63.22194 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2596 1.1081 0.0000 4 35 1.6608 2.9018 0.0007 5 6 3.5470 0.7037 0.0058 6 6 3.5465 -0.7054 -0.0008 7 6 2.2600 -1.1089 -0.0004 8 6 1.7825 -2.5383 -0.0006 9 7 1.5127 -2.9645 1.3790 10 6 2.7521 -3.0134 2.1671 11 6 2.4191 -3.3834 3.6144 12 7 1.7308 -4.6816 3.6394 13 6 1.4610 -5.1079 5.0191 14 6 2.7644 -5.3831 5.7239 15 1 3.6996 -5.2546 5.1992 16 6 2.7628 -5.7998 7.0381 17 7 1.6240 -5.9578 7.6766 18 14 4.3784 -6.1402 7.9119 19 1 4.8588 -4.8969 8.5664 20 1 4.1734 -7.1930 8.9390 21 1 5.3874 -6.6017 6.9248 22 6 0.4914 -4.6328 2.8514 23 6 0.8245 -4.2628 1.4041 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 4.4177 1.3426 0.0114 28 1 4.4169 -1.3449 -0.0011 29 1 0.8690 -2.6161 -0.5902 30 1 2.5509 -3.1780 -0.4348 31 1 3.4219 -3.7627 1.7452 32 1 3.2368 -2.0374 2.1436 33 1 1.7711 -2.6200 4.0450 34 1 3.3397 -3.4486 4.1942 35 1 0.9234 -4.3187 5.5446 36 1 0.8559 -6.0143 5.0075 37 1 1.6229 -6.2506 8.6013 38 1 -0.1784 -3.8835 3.2734 39 1 0.0068 -5.6087 2.8750 40 1 -0.0962 -4.1976 0.8244 41 1 1.4724 -5.0262 0.9735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248775618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:51 Heat of formation + Delta-G solvation = 67.896936 kcal Electronic energy + Delta-G solvation = -21897.721079 eV Core-core repulsion = 18666.892431 eV Total energy + Delta-G solvation = -3230.828648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46349 -38.64706 -35.21962 -33.10924 -32.62103 -31.85391 -30.46954 -29.78284 -27.50381 -26.57806 -25.47124 -23.56048 -22.90810 -21.35971 -20.78753 -19.24543 -19.13875 -16.94604 -16.31797 -16.13853 -15.31651 -14.91203 -14.52290 -14.40875 -14.21187 -13.85009 -13.65524 -13.44530 -13.27392 -12.73753 -12.67343 -12.39366 -12.33500 -12.00307 -11.80022 -11.66113 -11.18169 -11.00710 -10.83740 -10.72441 -10.67166 -10.61091 -10.38674 -10.26806 -9.71997 -9.17403 -8.78805 -8.43944 -8.30076 -8.04651 -7.22883 -6.02024 -4.03425 1.22051 1.85004 2.73887 2.82004 3.32612 3.38676 3.42958 4.13826 4.43177 4.57154 4.63782 4.93861 4.95230 5.04935 5.26122 5.32108 5.33814 5.35843 5.43048 5.49535 5.55272 5.73491 5.82119 5.92405 5.98949 6.03853 6.10125 6.18318 6.40477 6.58766 6.69702 6.71687 6.89282 7.00208 7.15896 7.18271 7.34756 7.37899 7.80738 8.09487 8.21090 8.55763 9.04153 9.60913 11.08905 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002561 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.279107 B =10929.171193 C =11494.087116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.421 5.421 3 C -0.002 4.002 4 Br -0.010 7.010 5 C -0.148 4.148 6 C -0.193 4.193 7 C 0.060 3.940 8 C 0.119 3.881 9 N -0.537 5.537 10 C 0.058 3.942 11 C 0.069 3.931 12 N -0.538 5.538 13 C 0.194 3.806 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.058 3.942 23 C 0.062 3.938 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.086 0.914 35 H -0.009 1.009 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 15.958 -20.365 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.098 5.098 3 C -0.191 4.191 4 Br 0.073 6.927 5 C -0.176 4.176 6 C -0.218 4.218 7 C -0.055 4.055 8 C -0.009 4.009 9 N -0.262 5.262 10 C -0.070 4.070 11 C -0.059 4.059 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.072 4.072 23 C -0.066 4.066 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.009 0.991 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.888 16.552 -20.179 26.258 hybrid contribution 0.792 -0.515 0.688 1.168 sum -2.096 16.037 -19.491 25.327 Atomic orbital electron populations 1.22076 0.76793 1.04063 1.04207 1.43795 1.06324 1.04238 1.55402 1.21836 0.92053 0.85324 1.19860 1.96681 1.90184 1.07546 1.98286 1.20769 0.94038 0.95267 1.07493 1.20729 0.95570 0.94355 1.11158 1.20300 0.89943 0.88086 1.07148 1.20526 1.00403 0.88776 0.91203 1.62195 1.24762 1.29295 1.09975 1.22302 0.89861 1.00476 0.94381 1.21972 0.99995 0.90153 0.93823 1.62294 1.20870 1.26727 1.16482 1.19692 0.97053 0.94966 0.81386 1.21154 0.92796 1.44669 0.95926 0.91908 1.24989 0.96459 0.95698 0.97472 1.69959 1.25184 1.47474 1.11254 0.86509 0.83721 0.77933 0.79332 1.20712 1.21278 1.19757 1.22042 0.92905 0.99909 0.92304 1.22167 0.97684 0.88859 0.97907 0.90009 0.90053 0.89440 0.83891 0.83973 0.90420 0.92224 0.94249 0.90531 0.95564 0.89572 0.99149 0.95270 0.92940 0.95293 0.90983 0.91330 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.72 59.85 0.64 1.26 16 2 N -0.42 -4.83 3.15 -117.95 -0.37 -5.20 16 3 C 0.00 -0.02 7.30 -16.71 -0.12 -0.14 16 4 Br -0.01 -0.10 33.33 -68.01 -2.27 -2.37 16 5 C -0.15 -1.74 10.82 -39.74 -0.43 -2.17 16 6 C -0.19 -2.29 9.64 -39.78 -0.38 -2.68 16 7 C 0.06 0.72 5.65 -81.75 -0.46 0.26 16 8 C 0.12 1.34 5.12 -4.98 -0.03 1.32 16 9 N -0.54 -7.55 4.70 -235.91 -1.11 -8.65 16 10 C 0.06 0.92 5.40 -3.77 -0.02 0.90 16 11 C 0.07 1.38 5.43 -3.76 -0.02 1.36 16 12 N -0.54 -11.66 4.70 -235.92 -1.11 -12.77 16 13 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 14 C -0.51 -14.27 8.47 -34.44 -0.29 -14.56 16 15 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 23 C 0.06 0.87 5.61 -3.76 -0.02 0.85 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.61 7.63 -51.93 -0.40 0.21 16 26 H 0.09 0.65 7.12 -51.93 -0.37 0.28 16 27 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.08 0.74 7.10 -51.93 -0.37 0.37 16 30 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 35 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 36 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -30.70 347.67 -11.56 -42.27 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -6.39 Total: -3.01 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.28 Total: -6.06 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.85 Total: -52.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.27 Total: -2.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.70 -11.56 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248775618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.162 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds