Wall clock time and date at job start Wed Apr 1 2020 00:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36356 * 125.64416 * 2 1 4 4 Br 1.89099 * 125.89448 * 0.02562 * 3 2 1 5 5 C 1.34943 * 108.20657 * 179.74272 * 3 2 1 6 6 C 1.40915 * 107.41797 * 0.43558 * 5 3 2 7 7 C 1.34830 * 107.43234 * 359.56006 * 6 5 3 8 8 C 1.50700 * 125.88926 * 180.26332 * 7 6 5 9 9 N 1.46896 * 109.47037 * 95.02904 * 8 7 6 10 10 C 1.46957 * 111.00333 * 293.80446 * 9 8 7 11 11 C 1.53051 * 109.36763 * 176.81089 * 10 9 8 12 12 N 1.46961 * 109.36212 * 58.39574 * 11 10 9 13 13 C 1.46905 * 110.99647 * 176.81084 * 12 11 10 14 14 C 1.50702 * 109.47262 * 293.80235 * 13 12 11 15 15 H 1.08004 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99968 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47587 * 89.99906 * 18 16 14 20 20 H 1.48507 * 109.47092 * 210.00276 * 18 16 14 21 21 H 1.48500 * 109.46995 * 329.99525 * 18 16 14 22 22 C 1.46951 * 110.88535 * 300.68100 * 12 11 10 23 23 C 1.46961 * 111.00166 * 169.99907 * 9 8 7 24 24 H 1.09000 * 109.47545 * 269.97569 * 1 2 3 25 25 H 1.09005 * 109.46949 * 29.97543 * 1 2 3 26 26 H 1.08997 * 109.47540 * 149.97268 * 1 2 3 27 27 H 1.07996 * 126.29295 * 180.27358 * 5 3 2 28 28 H 1.08002 * 126.28692 * 179.83435 * 6 5 3 29 29 H 1.09002 * 109.46969 * 215.03216 * 8 7 6 30 30 H 1.09002 * 109.46912 * 335.03263 * 8 7 6 31 31 H 1.09000 * 109.48319 * 296.77620 * 10 9 8 32 32 H 1.09000 * 109.49033 * 56.83946 * 10 9 8 33 33 H 1.08998 * 109.48538 * 298.43354 * 11 10 9 34 34 H 1.08995 * 109.48805 * 178.36514 * 11 10 9 35 35 H 1.08997 * 109.46909 * 53.80085 * 13 12 11 36 36 H 1.08994 * 109.46864 * 173.80465 * 13 12 11 37 37 H 0.96997 * 120.00143 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.48550 * 299.35561 * 22 12 11 39 39 H 1.08990 * 109.49042 * 179.29003 * 22 12 11 40 40 H 1.08995 * 109.49010 * 303.15686 * 23 9 8 41 41 H 1.09002 * 109.48527 * 63.22194 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2596 1.1081 0.0000 4 35 1.6608 2.9018 0.0007 5 6 3.5470 0.7037 0.0058 6 6 3.5465 -0.7054 -0.0008 7 6 2.2600 -1.1089 -0.0004 8 6 1.7825 -2.5383 -0.0006 9 7 1.5127 -2.9645 1.3790 10 6 2.7521 -3.0134 2.1671 11 6 2.4191 -3.3834 3.6144 12 7 1.7308 -4.6816 3.6394 13 6 1.4610 -5.1079 5.0191 14 6 2.7644 -5.3831 5.7239 15 1 3.6996 -5.2546 5.1992 16 6 2.7628 -5.7998 7.0381 17 7 1.6240 -5.9578 7.6766 18 14 4.3784 -6.1402 7.9119 19 1 4.8588 -4.8969 8.5664 20 1 4.1734 -7.1930 8.9390 21 1 5.3874 -6.6017 6.9248 22 6 0.4914 -4.6328 2.8514 23 6 0.8245 -4.2628 1.4041 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 4.4177 1.3426 0.0114 28 1 4.4169 -1.3449 -0.0011 29 1 0.8690 -2.6161 -0.5902 30 1 2.5509 -3.1780 -0.4348 31 1 3.4219 -3.7627 1.7452 32 1 3.2368 -2.0374 2.1436 33 1 1.7711 -2.6200 4.0450 34 1 3.3397 -3.4486 4.1942 35 1 0.9234 -4.3187 5.5446 36 1 0.8559 -6.0143 5.0075 37 1 1.6229 -6.2506 8.6013 38 1 -0.1784 -3.8835 3.2734 39 1 0.0068 -5.6087 2.8750 40 1 -0.0962 -4.1976 0.8244 41 1 1.4724 -5.0262 0.9735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248775618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:46 Heat of formation + Delta-G solvation = 48.095738 kcal Electronic energy + Delta-G solvation = -21898.579723 eV Core-core repulsion = 18666.892431 eV Total energy + Delta-G solvation = -3231.687292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -42.30855 -40.02841 -36.74010 -34.62157 -33.89565 -32.81552 -31.83655 -31.02891 -29.10557 -27.31892 -26.95903 -24.98018 -24.27188 -23.14444 -21.64688 -20.60076 -20.06460 -18.49653 -17.82397 -17.33648 -16.61968 -16.14757 -15.95840 -15.83057 -15.52274 -15.21375 -14.95207 -14.69329 -14.38496 -14.07085 -13.59371 -13.55382 -13.44327 -13.13054 -13.09398 -13.05271 -12.76778 -12.66592 -12.32898 -12.24243 -12.10509 -11.92293 -11.76240 -11.50744 -11.39278 -11.17718 -10.62726 -9.62919 -9.38784 -9.05978 -8.94476 -8.21417 -6.31814 0.38789 0.98162 1.40920 1.42236 1.53961 1.85354 2.04763 2.39918 3.04607 3.10961 3.30490 3.74127 3.91722 4.00813 4.15116 4.22843 4.31704 4.36343 4.42916 4.50428 4.58537 4.60758 4.66790 4.69191 4.73622 4.88586 4.98038 5.02855 5.07056 5.14142 5.19300 5.21969 5.27863 5.63229 5.81710 5.98299 6.02036 6.04532 6.11043 6.23994 6.33877 6.62768 6.84120 7.38120 8.89895 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002561 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.279107 B =10929.171193 C =11494.087116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.425 5.425 3 C -0.014 4.014 4 Br 0.002 6.998 5 C -0.162 4.162 6 C -0.203 4.203 7 C 0.049 3.951 8 C 0.125 3.875 9 N -0.544 5.544 10 C 0.075 3.925 11 C 0.073 3.927 12 N -0.543 5.543 13 C 0.210 3.790 14 C -0.523 4.523 15 H 0.063 0.937 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.054 3.946 23 C 0.073 3.927 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.007 0.993 34 H 0.064 0.936 35 H -0.044 1.044 36 H 0.005 0.995 37 H 0.265 0.735 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 16.222 -22.100 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.101 5.101 3 C -0.204 4.204 4 Br 0.086 6.914 5 C -0.190 4.190 6 C -0.229 4.229 7 C -0.066 4.066 8 C -0.003 4.003 9 N -0.269 5.269 10 C -0.053 4.053 11 C -0.056 4.056 12 N -0.268 5.268 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.075 4.075 23 C -0.055 4.055 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.025 0.975 34 H 0.083 0.917 35 H -0.026 1.026 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.298 16.828 -21.947 27.752 hybrid contribution 0.537 -0.528 1.202 1.419 sum -1.761 16.300 -20.745 26.441 Atomic orbital electron populations 1.22245 0.75489 1.05629 1.04162 1.44007 1.07231 1.04019 1.54871 1.22106 0.92407 0.86166 1.19728 1.96682 1.90025 1.06458 1.98257 1.21022 0.94633 0.95615 1.07741 1.20953 0.96107 0.94644 1.11188 1.20447 0.90126 0.88530 1.07514 1.20573 1.02031 0.88317 0.89344 1.62125 1.23693 1.29232 1.11886 1.22032 0.90827 1.00683 0.91772 1.21921 0.98278 0.88730 0.96650 1.62234 1.22902 1.27809 1.13846 1.19336 0.95684 0.92797 0.83865 1.21454 0.93339 1.44781 0.96594 0.91900 1.25932 1.00285 0.95217 0.98268 1.70088 1.27607 1.48168 1.11723 0.85376 0.79097 0.78020 0.78106 1.19878 1.20660 1.18725 1.22177 0.91142 0.99869 0.94309 1.22097 0.99421 0.88941 0.95042 0.90780 0.88867 0.87636 0.82958 0.83221 0.87947 0.91138 0.94012 0.89833 0.97471 0.91718 1.02602 0.97680 0.92666 0.96395 0.90876 0.87711 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.72 127.77 1.37 2.38 16 2 N -0.43 -8.89 3.15 -527.07 -1.66 -10.55 16 3 C -0.01 -0.32 7.30 83.23 0.61 0.29 16 4 Br 0.00 0.04 33.33 -20.37 -0.68 -0.63 16 5 C -0.16 -3.61 10.82 22.17 0.24 -3.37 16 6 C -0.20 -4.50 9.64 22.14 0.21 -4.29 16 7 C 0.05 1.06 5.65 41.06 0.23 1.29 16 8 C 0.12 2.39 5.12 85.56 0.44 2.83 16 9 N -0.54 -14.02 4.70 -900.28 -4.23 -18.25 16 10 C 0.07 2.30 5.40 86.31 0.47 2.76 16 11 C 0.07 2.95 5.43 86.31 0.47 3.42 16 12 N -0.54 -23.97 4.70 -900.30 -4.23 -28.20 16 13 C 0.21 11.48 4.72 85.56 0.40 11.88 16 14 C -0.52 -30.20 8.47 25.60 0.22 -29.98 16 15 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 18 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.05 1.90 5.61 86.31 0.48 2.39 16 23 C 0.07 1.87 5.61 86.31 0.48 2.35 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.18 7.63 -2.38 -0.02 1.17 16 26 H 0.11 1.21 7.12 -2.39 -0.02 1.20 16 27 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.10 1.49 7.10 -2.39 -0.02 1.48 16 30 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 2.47 6.37 -2.39 -0.02 2.45 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 2.85 6.79 -2.39 -0.02 2.84 16 35 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 36 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 40 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.38 347.67 -1.40 -68.78 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.01 Total: 6.46 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 6.09 Total: -7.53 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -9.84 Total: -113.83 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.68 Total: -0.63 kcal Total: -67.38 -1.40 -68.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248775618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.878 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.57 seconds