Wall clock time and date at job start Wed Apr 1 2020 00:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34228 * 116.99773 * 2 1 4 4 O 1.20821 * 120.00320 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99796 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.99791 * 328.54251 * 5 3 2 7 7 C 1.54307 * 109.77441 * 89.70377 * 5 3 2 8 8 C 1.55156 * 102.86658 * 141.88694 * 7 5 3 9 9 F 1.39897 * 111.00209 * 206.22925 * 8 7 5 10 10 F 1.39898 * 111.03917 * 82.38456 * 8 7 5 11 11 C 1.54907 * 101.57717 * 324.30000 * 8 7 5 12 12 N 1.47029 * 109.87888 * 207.45030 * 5 3 2 13 13 S 1.65598 * 125.64801 * 61.67849 * 12 5 3 14 14 O 1.42105 * 104.27673 * 338.16841 * 13 12 5 15 15 O 1.42095 * 104.27459 * 210.30859 * 13 12 5 16 16 C 1.81404 * 104.44930 * 94.23796 * 13 12 5 17 17 C 1.52995 * 109.47002 * 179.80013 * 16 13 12 18 18 C 1.53000 * 109.47018 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47484 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99484 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00068 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00369 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47243 * 179.97438 * 23 21 19 25 25 H 1.48506 * 109.47106 * 300.00294 * 23 21 19 26 26 H 1.48501 * 109.47207 * 59.99778 * 23 21 19 27 27 H 1.08995 * 109.47568 * 59.99996 * 1 2 3 28 28 H 1.09009 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47371 * 299.99945 * 1 2 3 30 30 H 1.09002 * 110.93092 * 23.46554 * 7 5 3 31 31 H 1.09009 * 110.73897 * 260.21499 * 7 5 3 32 32 H 1.08998 * 110.36978 * 278.17185 * 11 8 7 33 33 H 1.09004 * 110.36833 * 155.84677 * 11 8 7 34 34 H 1.08997 * 109.47133 * 59.79603 * 16 13 12 35 35 H 1.09004 * 109.46841 * 299.79854 * 16 13 12 36 36 H 1.08997 * 109.47511 * 59.99822 * 17 16 13 37 37 H 1.09004 * 109.47193 * 299.99625 * 17 16 13 38 38 H 1.09001 * 109.47555 * 59.99227 * 18 17 16 39 39 H 1.08999 * 109.47187 * 299.99574 * 18 17 16 40 40 H 0.96996 * 120.00155 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9845 0.4217 0.5336 7 6 4.0874 1.2950 -1.4529 8 6 5.2737 2.2924 -1.3804 9 9 5.4997 2.8938 -2.6232 10 9 6.4320 1.6622 -0.9131 11 6 4.7495 3.3247 -0.3512 12 7 4.0016 2.5262 0.6369 13 16 3.7067 2.9630 2.2068 14 8 2.5789 2.1839 2.5814 15 8 3.6371 4.3818 2.1685 16 6 5.1829 2.4223 3.1119 17 6 5.0323 2.7785 4.5922 18 6 6.2776 2.3230 5.3556 19 6 6.1297 2.6744 6.8136 20 1 5.2369 3.1731 7.1609 21 6 7.1341 2.3592 7.7040 22 7 8.2214 1.7524 7.2809 23 14 6.9509 2.7954 9.5111 24 1 8.1590 2.3521 10.2522 25 1 6.7947 4.2654 9.6521 26 1 5.7532 2.1149 10.0657 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.3201 1.6574 -2.1369 31 1 4.4332 0.3056 -1.7526 32 1 4.0889 4.0428 -0.8369 33 1 5.5825 3.8386 0.1287 34 1 6.0619 2.9225 2.7054 35 1 5.2981 1.3434 3.0077 36 1 4.1534 2.2783 4.9988 37 1 4.9172 3.8574 4.6965 38 1 7.1564 2.8235 4.9489 39 1 6.3933 1.2442 5.2514 40 1 8.9282 1.5310 7.9073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331220965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:41 Heat of formation + Delta-G solvation = -277.576851 kcal Electronic energy + Delta-G solvation = -28885.680218 eV Core-core repulsion = 24269.819814 eV Total energy + Delta-G solvation = -4615.860404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 19.55 seconds Orbital eigenvalues (eV) -49.97947 -48.16346 -41.79947 -39.14068 -38.42068 -37.40066 -37.22617 -36.50807 -34.19372 -32.15890 -30.88373 -29.70141 -28.50569 -25.74092 -25.08398 -23.09780 -22.59331 -22.11681 -20.31660 -19.44052 -19.16249 -18.58914 -18.51738 -17.95164 -17.58924 -17.39206 -17.11433 -17.08762 -16.71929 -16.48653 -15.95935 -15.42583 -15.12334 -15.07963 -14.62995 -14.49643 -14.45710 -14.32071 -14.17366 -14.05687 -13.58846 -13.42706 -13.35440 -13.34633 -13.26551 -13.07262 -12.97697 -12.87007 -12.74530 -12.68667 -12.22238 -11.97452 -11.86718 -11.82785 -11.78134 -11.41021 -11.17732 -10.57007 -10.44288 -8.22668 -6.33711 -1.09848 0.92474 1.25939 1.40700 1.42738 1.50779 1.56983 2.36187 2.39774 2.48483 2.66364 2.73584 3.06529 3.11072 3.32584 3.61841 3.62972 3.77649 3.81077 3.91138 4.02238 4.29054 4.31555 4.33414 4.40759 4.42293 4.49482 4.59070 4.66924 4.70776 4.84359 4.88791 5.02624 5.27142 5.44511 5.61701 5.78823 6.18937 6.57275 6.81434 7.35645 8.88493 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003177 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.586223 B = 8811.154338 C = 9853.250060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.451 3.549 4 O -0.524 6.524 5 C 0.153 3.847 6 H 0.154 0.846 7 C -0.138 4.138 8 C 0.286 3.714 9 F -0.182 7.182 10 F -0.183 7.183 11 C 0.077 3.923 12 N -0.996 5.996 13 S 2.628 3.372 14 O -0.972 6.972 15 O -0.974 6.974 16 C -0.599 4.599 17 C -0.107 4.107 18 C 0.032 3.968 19 C -0.555 4.555 20 H 0.059 0.941 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.961 3.039 24 H -0.281 1.281 25 H -0.268 1.268 26 H -0.268 1.268 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.049 0.951 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.005 0.995 39 H 0.007 0.993 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -4.877 -23.043 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.292 3.708 4 O -0.412 6.412 5 C 0.045 3.955 6 H 0.172 0.828 7 C -0.177 4.177 8 C 0.248 3.752 9 F -0.162 7.162 10 F -0.163 7.163 11 C -0.048 4.048 12 N -0.833 5.833 13 S 2.727 3.273 14 O -0.963 6.963 15 O -0.964 6.964 16 C -0.731 4.731 17 C -0.146 4.146 18 C -0.006 4.006 19 C -0.593 4.593 20 H 0.078 0.922 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.785 3.215 24 H -0.206 1.206 25 H -0.193 1.193 26 H -0.193 1.193 27 H 0.089 0.911 28 H 0.155 0.845 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.179 -4.182 -22.645 25.177 hybrid contribution 0.548 0.159 1.123 1.259 sum -9.631 -4.024 -21.522 23.919 Atomic orbital electron populations 1.23580 0.74671 1.05940 1.02348 1.86449 1.25032 1.31913 1.83374 1.24253 0.92703 0.81912 0.71886 1.90673 1.67533 1.37529 1.45458 1.21199 0.86731 0.89613 0.97919 0.82840 1.23652 0.96712 1.04085 0.93257 1.21667 0.83214 0.90580 0.79785 1.93055 1.95503 1.84414 1.43272 1.93087 1.51984 1.82936 1.88340 1.23125 0.98138 0.93276 0.90294 1.58534 1.68873 1.29018 1.26843 1.04619 0.76684 0.73738 0.72264 1.93544 1.48506 1.72346 1.81863 1.93542 1.87212 1.30375 1.85298 1.30494 1.20239 1.14513 1.07889 1.21347 1.01406 1.01438 0.90456 1.18955 0.92182 0.95787 0.93691 1.21701 1.03809 1.39042 0.94738 0.92241 1.25895 0.94836 0.94810 1.03785 1.70052 1.08035 1.41943 1.36750 0.85565 0.77804 0.79001 0.79106 1.20582 1.19319 1.19260 0.91137 0.84498 0.93242 0.85708 0.82397 0.86747 0.85990 0.83066 0.82701 0.91388 0.91579 0.97624 0.97477 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.55 113.37 1.20 1.63 16 2 O -0.35 -6.96 10.56 -51.39 -0.54 -7.51 16 3 C 0.45 10.42 5.59 71.24 0.40 10.82 16 4 O -0.52 -15.89 15.83 25.76 0.41 -15.48 16 5 C 0.15 2.57 3.52 44.59 0.16 2.73 16 6 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -1.37 6.08 31.78 0.19 -1.17 16 8 C 0.29 3.92 2.63 31.99 0.08 4.01 16 9 F -0.18 -2.73 17.23 44.97 0.78 -1.96 16 10 F -0.18 -2.95 17.24 44.97 0.78 -2.18 16 11 C 0.08 1.30 6.57 86.85 0.57 1.87 16 12 N -1.00 -21.39 2.99 -488.12 -1.46 -22.85 16 13 S 2.63 77.71 5.53 -56.49 -0.31 77.40 16 14 O -0.97 -34.07 15.82 -123.01 -1.95 -36.01 16 15 O -0.97 -34.62 17.67 -127.65 -2.26 -36.87 16 16 C -0.60 -17.24 6.18 71.98 0.44 -16.79 16 17 C -0.11 -4.25 5.16 30.59 0.16 -4.09 16 18 C 0.03 1.63 4.97 29.85 0.15 1.78 16 19 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 28 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 30 H 0.12 1.05 7.85 -2.39 -0.02 1.03 16 31 H 0.16 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -80.22 362.60 2.85 -77.36 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.06 Total: 6.40 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.05 Total: -29.42 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.18 Total: -77.53 kcal Atomic # 8 Polarization: -91.53 SS G_CDS: -4.34 Total: -95.87 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 1.55 Total: -4.13 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 77.71 SS G_CDS: -0.31 Total: 77.40 kcal Total: -80.22 2.85 -77.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331220965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.214 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.55 seconds