Wall clock time and date at job start Wed Apr 1 2020 00:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47276 * 238.72499 * 3 2 1 5 5 C 1.36937 * 120.00185 * 273.37971 * 4 3 2 6 6 H 1.07993 * 120.00048 * 186.54450 * 5 4 3 7 7 C 1.38818 * 119.99688 * 6.54090 * 5 4 3 8 8 N 1.31618 * 120.00231 * 25.63012 * 7 5 4 9 9 Si 1.86799 * 119.99749 * 205.62266 * 7 5 4 10 10 H 1.48500 * 109.47264 * 60.00282 * 9 7 5 11 11 H 1.48506 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47411 * 300.00223 * 9 7 5 13 13 S 1.65599 * 120.00010 * 93.37352 * 4 3 2 14 14 O 1.42102 * 104.27801 * 153.93037 * 13 4 3 15 15 O 1.42097 * 104.27581 * 26.07462 * 13 4 3 16 16 C 1.81400 * 104.44995 * 270.00152 * 13 4 3 17 17 C 1.52996 * 109.47298 * 179.97438 * 16 13 4 18 18 H 1.09009 * 109.47281 * 60.00021 * 17 16 13 19 19 O 1.42905 * 109.47406 * 300.00443 * 17 16 13 20 20 C 1.42903 * 114.00054 * 149.99590 * 19 17 16 21 21 C 1.50702 * 109.47653 * 180.02562 * 17 16 13 22 22 C 1.38239 * 119.97150 * 84.72321 * 21 17 16 23 23 C 1.38204 * 120.02242 * 179.77165 * 22 21 17 24 24 C 1.38456 * 119.97318 * 0.50827 * 23 22 21 25 25 F 1.35100 * 120.02705 * 179.76982 * 24 23 22 26 26 C 1.38459 * 119.95074 * 359.74634 * 24 23 22 27 27 C 1.38194 * 119.97080 * 359.97438 * 26 24 23 28 28 H 4.40642 * 5.51562 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47124 * 118.72700 * 3 2 1 30 30 H 1.08994 * 109.47599 * 358.72395 * 3 2 1 31 31 H 0.96993 * 120.00303 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46891 * 60.00351 * 16 13 4 33 33 H 1.08994 * 109.47372 * 300.00333 * 16 13 4 34 34 H 1.09000 * 109.47001 * 180.02562 * 20 19 17 35 35 H 1.09001 * 109.47047 * 299.99719 * 20 19 17 36 36 H 1.09000 * 109.47085 * 60.00313 * 20 19 17 37 37 H 1.08000 * 119.99397 * 0.02664 * 22 21 17 38 38 H 1.08001 * 120.01290 * 180.25818 * 23 22 21 39 39 H 1.07994 * 120.01705 * 179.97438 * 26 24 23 40 40 H 1.08004 * 119.98983 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7179 1.1805 5 6 3.2958 2.0771 1.1376 6 1 3.7539 2.5928 1.9685 7 6 2.8708 2.7918 0.0260 8 7 1.9044 2.3177 -0.7312 9 14 3.6706 4.4266 -0.3949 10 1 5.1217 4.2208 -0.6340 11 1 3.0411 4.9851 -1.6185 12 1 3.4844 5.3739 0.7335 13 16 3.4900 -0.1148 2.5669 14 8 4.4573 0.6936 3.2228 15 8 3.8127 -1.4234 2.1166 16 6 1.9339 -0.1281 3.4991 17 6 2.1353 -0.8788 4.8170 18 1 2.9066 -0.3808 5.4047 19 8 2.5381 -2.2223 4.5433 20 6 3.3729 -2.7957 5.5515 21 6 0.8424 -0.8904 5.5912 22 6 -0.1093 -1.8589 5.3318 23 6 -1.2933 -1.8734 6.0444 24 6 -1.5305 -0.9111 7.0113 25 9 -2.6895 -0.9215 7.7053 26 6 -0.5788 0.0616 7.2666 27 6 0.6068 0.0706 6.5567 28 1 -1.0501 0.0001 -0.0002 29 1 3.0091 0.4948 -0.9012 30 1 3.0098 -1.0265 0.0229 31 1 1.6072 2.8172 -1.5077 32 1 1.1628 -0.6265 2.9118 33 1 1.6264 0.8966 3.7075 34 1 3.6353 -3.8153 5.2693 35 1 4.2813 -2.2017 5.6521 36 1 2.8391 -2.8073 6.5018 37 1 0.0742 -2.6070 4.5747 38 1 -2.0349 -2.6326 5.8445 39 1 -0.7629 0.8129 8.0202 40 1 1.3496 0.8289 6.7559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334971237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:43 Heat of formation + Delta-G solvation = -73.830319 kcal Electronic energy + Delta-G solvation = -27947.898101 eV Core-core repulsion = 23771.642035 eV Total energy + Delta-G solvation = -4176.256067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 5.33 seconds Orbital eigenvalues (eV) -49.95636 -40.71216 -38.63058 -38.07031 -37.65013 -36.46635 -33.80154 -33.68305 -32.86523 -32.16631 -30.30298 -28.32175 -27.49392 -25.71072 -24.93186 -24.03825 -22.17361 -20.26028 -19.63773 -18.93639 -18.62649 -18.24721 -18.08835 -17.65955 -16.92680 -16.70868 -16.60539 -16.48678 -16.15649 -15.83841 -15.55768 -15.25878 -14.98341 -14.68189 -14.51877 -14.27979 -14.15049 -13.79757 -13.55836 -13.53682 -13.13092 -13.04433 -12.72826 -12.70346 -12.65927 -12.57587 -12.29885 -12.24760 -11.98880 -11.90526 -11.61004 -11.31772 -10.94993 -10.80914 -10.53410 -10.14065 -10.05427 -9.64602 -8.31591 -5.77619 -0.30277 0.04404 0.20343 1.50247 1.56251 1.63739 1.93467 2.35744 2.46359 2.46945 2.56152 2.73138 2.89963 3.19507 3.30426 3.58382 3.63511 3.68609 3.87142 3.90825 3.94208 3.97876 4.29452 4.34112 4.40942 4.46262 4.47557 4.58382 4.77905 4.86577 4.91091 4.93573 4.98833 5.06853 5.18121 5.26302 5.40816 5.45472 5.54059 5.83304 6.05279 6.37963 6.82098 7.20591 7.23862 8.60555 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.003837 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.337816 B = 7295.028610 C = 7924.683361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.148 4.148 3 C 0.236 3.764 4 N -0.818 5.818 5 C -0.290 4.290 6 H 0.113 0.887 7 C 0.002 3.998 8 N -0.840 5.840 9 Si 0.983 3.017 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.265 1.265 13 S 2.507 3.493 14 O -1.008 7.008 15 O -0.998 6.998 16 C -0.642 4.642 17 C 0.143 3.857 18 H 0.084 0.916 19 O -0.393 6.393 20 C 0.015 3.985 21 C -0.119 4.119 22 C -0.075 4.075 23 C -0.154 4.154 24 C 0.084 3.916 25 F -0.145 7.145 26 C -0.150 4.150 27 C -0.088 4.088 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.277 0.723 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -4.341 10.369 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.151 4.151 3 C 0.110 3.890 4 N -0.641 5.641 5 C -0.433 4.433 6 H 0.131 0.869 7 C -0.208 4.208 8 N -0.478 5.478 9 Si 0.806 3.194 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.190 1.190 13 S 2.607 3.393 14 O -0.998 6.998 15 O -0.987 6.987 16 C -0.765 4.765 17 C 0.084 3.916 18 H 0.102 0.898 19 O -0.312 6.312 20 C -0.081 4.081 21 C -0.120 4.120 22 C -0.093 4.093 23 C -0.172 4.172 24 C 0.065 3.935 25 F -0.123 7.123 26 C -0.168 4.168 27 C -0.106 4.106 28 H 0.247 0.753 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.410 -4.973 10.452 12.386 hybrid contribution -0.952 1.022 0.046 1.398 sum -5.362 -3.950 10.498 12.433 Atomic orbital electron populations 1.25023 0.96167 1.05010 1.00811 1.23595 0.95033 0.96559 0.99915 1.18331 0.84506 0.95612 0.90515 1.54675 1.73607 1.15796 1.19987 1.20027 1.34208 0.82949 1.06164 0.86905 1.26148 0.95172 1.02428 0.97030 1.70294 1.21643 1.39699 1.16191 0.85140 0.78771 0.77323 0.78185 1.19559 1.20074 1.18993 1.11771 0.80266 0.73161 0.74053 1.93341 1.60486 1.69208 1.76752 1.93351 1.85020 1.40856 1.79519 1.31074 1.28820 1.07276 1.09285 1.20522 0.94392 0.83717 0.92928 0.89778 1.88029 1.69093 1.27070 1.47055 1.23137 0.93286 1.00040 0.91617 1.20345 0.96846 0.97318 0.97490 1.20947 0.91865 0.98053 0.98408 1.21325 0.99128 1.00018 0.96750 1.17915 0.83102 0.98199 0.94323 1.91482 1.46724 1.96293 1.77827 1.21322 0.93382 0.99564 1.02568 1.21133 0.97494 0.97910 0.94072 0.75331 0.87813 0.89558 0.91242 0.86271 0.84866 0.87590 0.93729 0.91870 0.84583 0.82902 0.82351 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.88 19.25 74.32 1.43 -8.45 16 2 C -0.15 -6.54 11.24 31.13 0.35 -6.19 16 3 C 0.24 10.74 5.43 84.57 0.46 11.20 16 4 N -0.82 -38.96 2.81 -352.51 -0.99 -39.95 16 5 C -0.29 -14.21 9.42 84.04 0.79 -13.42 16 6 H 0.11 5.53 7.17 -2.91 -0.02 5.51 16 7 C 0.00 0.09 4.91 84.86 0.42 0.51 16 8 N -0.84 -39.65 8.98 21.65 0.19 -39.45 16 9 Si 0.98 37.41 29.62 68.60 2.03 39.44 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 11 H -0.28 -10.14 7.11 99.48 0.71 -9.43 16 12 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 13 S 2.51 113.55 5.18 -56.49 -0.29 113.25 16 14 O -1.01 -49.98 16.77 -127.65 -2.14 -52.12 16 15 O -1.00 -48.41 15.88 -123.48 -1.96 -50.37 16 16 C -0.64 -24.03 5.88 71.98 0.42 -23.61 16 17 C 0.14 4.62 2.37 29.85 0.07 4.69 16 18 H 0.08 2.53 7.70 -2.38 -0.02 2.51 16 19 O -0.39 -13.13 8.54 -142.50 -1.22 -14.35 16 20 C 0.01 0.38 10.81 113.37 1.23 1.60 16 21 C -0.12 -3.27 4.96 -19.86 -0.10 -3.37 16 22 C -0.07 -1.95 9.35 22.26 0.21 -1.74 16 23 C -0.15 -3.53 10.03 22.31 0.22 -3.31 16 24 C 0.08 1.95 7.30 22.37 0.16 2.11 16 25 F -0.14 -3.40 17.27 44.97 0.78 -2.62 16 26 C -0.15 -3.20 10.03 22.31 0.22 -2.98 16 27 C -0.09 -2.06 9.68 22.26 0.22 -1.85 16 28 H 0.23 7.03 7.80 -4.41 -0.03 6.99 16 29 H 0.10 4.85 6.43 -2.39 -0.02 4.83 16 30 H 0.09 3.76 6.84 -2.39 -0.02 3.74 16 31 H 0.28 12.39 8.31 -92.71 -0.77 11.62 16 32 H 0.12 4.53 8.14 -2.39 -0.02 4.51 16 33 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.04 1.11 8.08 -2.39 -0.02 1.10 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.14 3.59 7.63 -2.91 -0.02 3.57 16 38 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -61.74 363.74 3.56 -58.18 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 1.06 Total: 32.78 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 6.10 Total: -44.80 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -0.80 Total: -79.40 kcal Atomic # 8 Polarization: -111.52 SS G_CDS: -5.32 Total: -116.83 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: 113.55 SS G_CDS: -0.29 Total: 113.25 kcal Total: -61.74 3.56 -58.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334971237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.650 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.33 seconds