Wall clock time and date at job start Wed Apr 1 2020 00:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99732 * 2 1 4 4 O 1.20829 * 119.99893 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00186 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46638 * 299.99816 * 5 3 2 7 7 C 1.53003 * 109.47034 * 59.99769 * 5 3 2 8 8 C 1.52993 * 109.46781 * 185.00158 * 7 5 3 9 9 F 1.39898 * 109.47221 * 179.97438 * 8 7 5 10 10 N 1.46501 * 109.47070 * 180.02562 * 5 3 2 11 11 C 1.34774 * 119.99747 * 155.00438 * 10 5 3 12 12 O 1.21551 * 120.00489 * 359.97438 * 11 10 5 13 13 C 1.47866 * 119.99757 * 179.97438 * 11 10 5 14 14 C 1.39670 * 120.09977 * 359.71796 * 13 11 10 15 15 C 1.38047 * 120.03708 * 179.74981 * 14 13 11 16 16 C 1.38181 * 120.23973 * 0.55001 * 15 14 13 17 17 C 1.39180 * 120.20403 * 359.70645 * 16 15 14 18 18 S 1.76199 * 120.02089 * 179.97438 * 17 16 15 19 19 C 1.76191 * 100.00114 * 265.52459 * 18 17 16 20 20 H 1.08002 * 119.99817 * 5.11722 * 19 18 17 21 21 C 1.38729 * 120.00363 * 185.11953 * 19 18 17 22 22 N 1.31625 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00175 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46971 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46868 * 120.00103 * 23 21 19 26 26 H 1.48493 * 109.47106 * 239.99906 * 23 21 19 27 27 C 1.38869 * 119.95879 * 0.02562 * 17 16 15 28 28 H 1.09004 * 109.46645 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47069 * 299.99551 * 1 2 3 30 30 H 1.08995 * 109.47361 * 60.00297 * 1 2 3 31 31 H 1.08991 * 109.46783 * 65.00219 * 7 5 3 32 32 H 1.08996 * 109.46547 * 305.00091 * 7 5 3 33 33 H 1.09001 * 109.47407 * 60.00456 * 8 7 5 34 34 H 1.09001 * 109.47402 * 300.00237 * 8 7 5 35 35 H 0.96997 * 120.00257 * 334.99327 * 10 5 3 36 36 H 1.07993 * 119.98296 * 359.97438 * 14 13 11 37 37 H 1.07999 * 119.88038 * 180.27595 * 15 14 13 38 38 H 1.08005 * 119.89572 * 179.72308 * 16 15 14 39 39 H 0.96999 * 119.99685 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.12098 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9563 0.7808 0.8892 7 6 4.1129 0.5817 -1.2502 8 6 5.6413 0.5520 -1.1894 9 9 6.1412 -0.0825 -2.3317 10 7 3.9816 2.6799 0.0002 11 6 5.1873 3.0260 0.4931 12 8 5.9300 2.1725 0.9374 13 6 5.6066 4.4439 0.4933 14 6 4.7573 5.4256 -0.0222 15 6 5.1480 6.7496 -0.0166 16 6 6.3835 7.1085 0.4876 17 6 7.2400 6.1379 0.9988 18 16 8.8146 6.6008 1.6398 19 6 9.8141 6.3431 0.2119 20 1 9.3547 6.0703 -0.7267 21 6 11.1911 6.4904 0.2933 22 7 11.7509 6.8232 1.4371 23 14 12.2508 6.2164 -1.2205 24 1 11.3854 5.8541 -2.3716 25 1 12.9963 7.4617 -1.5349 26 1 13.2131 5.1162 -0.9585 27 6 6.8532 4.8041 1.0024 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.7951 1.1289 -2.1376 32 1 3.7311 -0.4382 -1.2960 33 1 5.9592 0.0047 -0.3020 34 1 6.0231 1.5719 -1.1434 35 1 3.3889 3.3611 -0.3542 36 1 3.7930 5.1492 -0.4220 37 1 4.4875 7.5072 -0.4117 38 1 6.6853 8.1455 0.4851 39 1 12.7138 6.9259 1.4940 40 1 7.5155 4.0488 1.3989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362901898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:12 Heat of formation + Delta-G solvation = -169.702999 kcal Electronic energy + Delta-G solvation = -26602.079812 eV Core-core repulsion = 22421.666394 eV Total energy + Delta-G solvation = -4180.413418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.65458 -42.13984 -41.12137 -39.33868 -37.83148 -36.64108 -34.64884 -33.75787 -31.99958 -31.67517 -29.56282 -27.74708 -27.58317 -24.98477 -23.71228 -23.48643 -22.12397 -21.66935 -20.20564 -19.39525 -18.63314 -18.11673 -17.81995 -17.51287 -17.22283 -16.94367 -16.93009 -16.67903 -16.16335 -15.94367 -15.73641 -15.56077 -15.27151 -14.80190 -14.61328 -14.54448 -14.39035 -13.92840 -13.69156 -13.31129 -13.18197 -13.08253 -12.98383 -12.96672 -12.66599 -12.41371 -12.37933 -11.88677 -11.78316 -11.71641 -11.60438 -11.29506 -11.19874 -10.76295 -10.56402 -9.96440 -9.71430 -8.80109 -8.39212 -6.18788 -0.23478 0.24386 0.86577 1.15968 1.30650 1.36473 1.46873 1.64087 1.70809 2.03033 2.23941 2.76470 2.94135 3.22829 3.41980 3.44680 3.60217 3.70905 3.82848 3.92591 4.00026 4.05782 4.20415 4.28438 4.34617 4.35034 4.45367 4.55831 4.61036 4.65731 4.73367 4.90961 4.99135 5.02270 5.17522 5.18086 5.31389 5.39338 5.49124 5.83077 6.16491 6.21545 6.44463 6.91660 7.01767 8.68029 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014881 B = 0.002806 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.199070 B = 9975.421790 C =11219.023097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.474 3.526 4 O -0.517 6.517 5 C 0.159 3.841 6 H 0.137 0.863 7 C -0.147 4.147 8 C 0.064 3.936 9 F -0.231 7.231 10 N -0.705 5.705 11 C 0.575 3.425 12 O -0.555 6.555 13 C -0.158 4.158 14 C -0.065 4.065 15 C -0.122 4.122 16 C -0.060 4.060 17 C -0.130 4.130 18 S -0.093 6.093 19 C -0.533 4.533 20 H 0.067 0.933 21 C 0.020 3.980 22 N -0.906 5.906 23 Si 0.990 3.010 24 H -0.266 1.266 25 H -0.267 1.267 26 H -0.272 1.272 27 C -0.037 4.037 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.135 0.865 39 H 0.274 0.726 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.201 -11.871 -6.310 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.316 3.684 4 O -0.406 6.406 5 C 0.053 3.947 6 H 0.154 0.846 7 C -0.186 4.186 8 C 0.009 3.991 9 F -0.212 7.212 10 N -0.362 5.362 11 C 0.364 3.636 12 O -0.434 6.434 13 C -0.163 4.163 14 C -0.083 4.083 15 C -0.142 4.142 16 C -0.081 4.081 17 C -0.241 4.241 18 S 0.142 5.858 19 C -0.681 4.681 20 H 0.086 0.914 21 C -0.185 4.185 22 N -0.542 5.542 23 Si 0.813 3.187 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.198 1.198 27 C -0.059 4.059 28 H 0.152 0.848 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.260 0.740 36 H 0.184 0.816 37 H 0.190 0.810 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.415 -11.798 -4.847 27.546 hybrid contribution 0.410 -0.063 -1.668 1.718 sum -24.004 -11.860 -6.515 27.556 Atomic orbital electron populations 1.23668 0.73761 1.06137 1.02968 1.86485 1.25572 1.31350 1.83185 1.23249 0.91012 0.82115 0.71977 1.90690 1.66982 1.36976 1.45930 1.20286 0.87507 0.83978 1.02952 0.84605 1.22493 0.94647 1.04219 0.97245 1.22149 0.94114 0.97928 0.84933 1.92733 1.89244 1.84655 1.54587 1.45588 1.18152 1.08586 1.63836 1.18179 0.80970 0.88179 0.76293 1.90786 1.53647 1.51737 1.47274 1.19826 0.96378 0.93133 1.06948 1.21697 0.99018 0.92258 0.95334 1.21524 0.95781 0.97068 0.99797 1.22090 0.93628 0.99477 0.92895 1.22508 1.00863 0.95902 1.04809 1.83519 0.95592 1.86004 1.20732 1.23082 0.94162 1.54927 0.95884 0.91440 1.25982 0.98191 0.93938 1.00417 1.70112 1.12066 1.45539 1.26517 0.85021 0.77759 0.78478 0.77488 1.19029 1.19163 1.19752 1.21651 0.94704 0.95185 0.94392 0.84807 0.91719 0.91279 0.88896 0.86045 0.89556 0.92241 0.74024 0.81643 0.81009 0.84724 0.91721 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.40 16 2 O -0.35 -4.34 10.37 -51.43 -0.53 -4.87 16 3 C 0.47 7.34 7.32 71.24 0.52 7.86 16 4 O -0.52 -10.02 15.59 21.96 0.34 -9.68 16 5 C 0.16 2.58 2.77 44.25 0.12 2.70 16 6 H 0.14 2.24 7.58 -2.39 -0.02 2.22 16 7 C -0.15 -2.23 5.31 30.59 0.16 -2.07 16 8 C 0.06 1.44 6.15 71.98 0.44 1.88 16 9 F -0.23 -6.10 17.36 44.97 0.78 -5.32 16 10 N -0.71 -13.65 4.86 -448.95 -2.18 -15.83 16 11 C 0.57 15.90 6.34 86.79 0.55 16.45 16 12 O -0.56 -18.60 13.48 -3.87 -0.05 -18.65 16 13 C -0.16 -4.85 5.87 -20.11 -0.12 -4.96 16 14 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 15 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 16 C -0.06 -2.05 9.79 22.48 0.22 -1.83 16 17 C -0.13 -5.58 5.45 22.65 0.12 -5.46 16 18 S -0.09 -5.02 21.40 -56.49 -1.21 -6.23 16 19 C -0.53 -30.99 9.46 67.94 0.64 -30.35 16 20 H 0.07 3.89 7.79 -2.91 -0.02 3.87 16 21 C 0.02 1.14 5.49 84.84 0.47 1.61 16 22 N -0.91 -54.39 13.22 21.64 0.29 -54.11 16 23 Si 0.99 44.58 29.55 68.60 2.03 46.61 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 C -0.04 -1.51 9.34 22.70 0.21 -1.30 16 28 H 0.13 0.20 8.14 -2.38 -0.02 0.18 16 29 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 30 H 0.07 0.48 8.13 -2.39 -0.02 0.46 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.09 1.94 7.84 -2.39 -0.02 1.93 16 34 H 0.06 1.62 5.65 -2.39 -0.01 1.61 16 35 H 0.42 6.63 5.82 -92.71 -0.54 6.09 16 36 H 0.17 2.30 6.40 -2.91 -0.02 2.29 16 37 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 40 H 0.11 5.02 7.65 -2.91 -0.02 4.99 16 Total: -1.00 -75.78 364.26 4.99 -70.78 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.55 Total: 15.38 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.98 Total: -18.09 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.89 Total: -69.94 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.24 Total: -33.20 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.21 Total: -6.23 kcal Total: -75.78 4.99 -70.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362901898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.920 kcal (2) G-P(sol) polarization free energy of solvation -75.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds