Wall clock time and date at job start Wed Apr 1 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99671 * 2 1 4 4 C 1.50697 * 109.47055 * 274.99144 * 3 2 1 5 5 H 1.07998 * 119.99912 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00060 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99730 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99931 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47517 * 59.99753 * 8 6 4 10 10 H 1.48505 * 109.47115 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46792 * 299.99372 * 8 6 4 12 12 S 1.65600 * 120.00093 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40022 * 156.46299 * 12 2 1 14 14 O 1.42104 * 106.40048 * 23.54308 * 12 2 1 15 15 N 1.65599 * 107.21963 * 270.00396 * 12 2 1 16 16 C 1.47422 * 125.64750 * 90.02619 * 15 12 2 17 17 C 1.54912 * 104.83500 * 155.83404 * 16 15 12 18 18 C 1.55162 * 101.57717 * 37.00946 * 17 16 15 19 19 H 1.09002 * 110.72059 * 82.86237 * 18 17 16 20 20 C 1.53001 * 110.71709 * 205.95763 * 18 17 16 21 21 S 1.81398 * 109.47537 * 291.15579 * 20 18 17 22 22 N 1.65592 * 104.45423 * 180.02562 * 21 20 18 23 23 O 1.42098 * 110.54342 * 291.63094 * 21 20 18 24 24 O 1.42098 * 110.54176 * 68.37388 * 21 20 18 25 25 C 1.47018 * 125.65175 * 269.98313 * 15 12 2 26 26 H 1.08995 * 109.47407 * 269.99810 * 1 2 3 27 27 H 1.08993 * 109.46836 * 30.00579 * 1 2 3 28 28 H 1.08997 * 109.46601 * 150.00529 * 1 2 3 29 29 H 1.08998 * 109.47189 * 34.99803 * 3 2 1 30 30 H 1.09003 * 109.47118 * 154.99909 * 3 2 1 31 31 H 0.97006 * 119.99971 * 180.02562 * 7 6 4 32 32 H 1.09003 * 110.37241 * 36.99772 * 16 15 12 33 33 H 1.09001 * 110.37136 * 274.67302 * 16 15 12 34 34 H 1.08999 * 111.00244 * 278.93675 * 17 16 15 35 35 H 1.08996 * 111.00556 * 155.07846 * 17 16 15 36 36 H 1.08999 * 109.47061 * 51.15864 * 20 18 17 37 37 H 1.09006 * 109.46767 * 171.15517 * 20 18 17 38 38 H 0.96996 * 120.00424 * 149.99977 * 22 21 20 39 39 H 0.97009 * 119.99890 * 330.00576 * 22 21 20 40 40 H 1.09001 * 109.88087 * 61.67497 * 25 15 12 41 41 H 1.09003 * 109.87911 * 300.51649 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9284 1.1937 -2.2331 6 6 3.0007 2.9502 -1.6665 7 7 3.5042 3.6464 -0.6707 8 14 3.1787 3.5664 -3.4209 9 1 1.8321 3.7729 -4.0121 10 1 3.9212 4.8525 -3.4210 11 1 3.9238 2.5641 -4.2244 12 16 2.2931 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5438 14 8 1.4114 -2.4067 -0.5434 15 7 2.5381 -1.8580 1.5826 16 6 1.6280 -2.6774 2.4034 17 6 2.5299 -3.2907 3.5035 18 6 3.5085 -2.1215 3.7915 19 1 3.0644 -1.4092 4.4869 20 6 4.8374 -2.6496 4.3357 21 16 4.5830 -3.3284 5.9985 22 7 6.0820 -3.8573 6.4628 23 8 4.2773 -2.2904 6.9195 24 8 3.7966 -4.5105 5.9395 25 6 3.6996 -1.4803 2.4009 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1858 1.1178 0.4343 31 1 3.9676 4.4801 -0.8473 32 1 1.1778 -3.4652 1.7993 33 1 0.8549 -2.0529 2.8511 34 1 3.0639 -4.1640 3.1291 35 1 1.9484 -3.5409 4.3908 36 1 5.2142 -3.4323 3.6774 37 1 5.5602 -1.8349 4.3824 38 1 6.3274 -3.8565 7.4012 39 1 6.7147 -4.1678 5.7962 40 1 3.7488 -0.3956 2.4964 41 1 4.6142 -1.8559 1.9420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364116500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:34 Heat of formation + Delta-G solvation = -143.312820 kcal Electronic energy + Delta-G solvation = -26741.917752 eV Core-core repulsion = 22718.012611 eV Total energy + Delta-G solvation = -4023.905141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -38.87491 -37.31047 -36.68557 -36.22177 -35.51301 -35.20940 -33.57245 -33.02094 -32.46082 -29.66275 -27.80471 -26.82265 -25.08999 -22.55925 -22.20704 -21.01706 -19.75333 -18.66243 -18.00436 -17.69666 -17.36771 -17.00138 -16.59133 -16.34729 -15.75496 -15.47376 -15.19055 -14.56825 -14.33194 -13.90937 -13.80781 -13.41428 -13.24838 -12.99949 -12.65339 -12.47857 -12.38350 -12.29795 -12.25027 -12.17820 -11.99160 -11.66724 -11.59253 -11.43919 -11.26487 -11.18968 -11.09916 -10.96068 -10.94026 -10.73948 -10.62862 -10.52579 -10.06375 -9.80499 -8.91233 -8.46627 -8.09743 -6.09411 -4.13607 -0.10306 1.09327 2.52075 3.29773 3.31920 3.35198 3.39541 3.44215 3.89762 3.99844 4.04728 4.21652 4.39982 4.43274 4.71232 4.87065 5.00725 5.14205 5.23932 5.25335 5.28944 5.52257 5.57204 5.62071 5.64812 5.75178 5.83746 5.93926 5.99097 6.14122 6.31392 6.40688 6.59841 6.63593 7.18151 7.35866 7.56656 7.87913 8.16998 8.88443 9.51700 10.99103 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018505 B = 0.003050 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.719607 B = 9179.570545 C = 9979.217879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.793 3.207 13 O -0.958 6.958 14 O -0.992 6.992 15 N -1.025 6.025 16 C 0.118 3.882 17 C -0.144 4.144 18 C -0.090 4.090 19 H 0.103 0.897 20 C -0.616 4.616 21 S 2.614 3.386 22 N -1.253 6.253 23 O -0.962 6.962 24 O -0.956 6.956 25 C 0.135 3.865 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.419 0.581 39 H 0.413 0.587 40 H 0.077 0.923 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -14.025 14.437 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.802 3.198 13 O -0.942 6.942 14 O -0.976 6.976 15 N -0.863 5.863 16 C -0.007 4.007 17 C -0.183 4.183 18 C -0.111 4.111 19 H 0.121 0.879 20 C -0.746 4.746 21 S 2.706 3.294 22 N -0.925 5.925 23 O -0.951 6.951 24 O -0.945 6.945 25 C 0.008 3.992 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.249 0.751 39 H 0.239 0.761 40 H 0.095 0.905 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.069 -14.296 14.101 20.187 hybrid contribution 0.969 0.810 -1.052 1.643 sum 3.037 -13.486 13.049 19.010 Atomic orbital electron populations 1.21348 0.80061 1.03467 1.00236 1.57695 1.14427 1.23377 1.88316 1.19050 0.90886 0.78794 0.97712 1.21451 1.36240 1.06408 0.92878 0.92231 1.24927 0.95053 0.96449 0.97531 1.69907 1.37227 1.15346 1.31002 0.86568 0.78336 0.77996 0.84619 1.20154 1.21137 1.19981 1.01653 0.73474 0.72741 0.71888 1.93622 1.40601 1.84912 1.75063 1.93520 1.67401 1.60531 1.76146 1.59465 1.29989 1.65856 1.31029 1.21946 0.92325 0.94180 0.92268 1.23183 0.97811 0.97342 0.99956 1.21975 0.91778 0.98598 0.98768 0.87863 1.30511 1.07048 1.13612 1.23419 1.04775 0.73132 0.75033 0.76493 1.53247 1.36670 1.84485 1.18106 1.93621 1.82677 1.59091 1.59749 1.93631 1.67357 1.47046 1.86516 1.21615 0.88927 1.00034 0.88629 0.94286 0.90339 0.91605 0.94720 0.94588 0.92609 0.89629 0.91331 0.89377 0.88945 0.84316 0.83839 0.75093 0.76078 0.90495 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.68 59.85 0.64 2.28 16 2 N -1.00 -20.63 3.23 -123.06 -0.40 -21.02 16 3 C 0.26 6.39 5.08 -5.20 -0.03 6.36 16 4 C -0.53 -14.82 9.38 -34.44 -0.32 -15.15 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 S 2.79 55.38 6.31 -107.50 -0.68 54.70 16 13 O -0.96 -22.60 16.69 -57.17 -0.95 -23.55 16 14 O -0.99 -20.48 16.06 -57.17 -0.92 -21.40 16 15 N -1.02 -15.41 3.75 -111.42 -0.42 -15.83 16 16 C 0.12 1.40 7.10 -2.53 -0.02 1.38 16 17 C -0.14 -1.39 5.52 -24.58 -0.14 -1.52 16 18 C -0.09 -0.85 2.94 -88.78 -0.26 -1.11 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.62 -3.82 5.52 37.16 0.21 -3.62 16 21 S 2.61 19.37 5.79 -107.50 -0.62 18.74 16 22 N -1.25 -5.21 9.36 60.35 0.57 -4.65 16 23 O -0.96 -10.86 18.10 -57.54 -1.04 -11.90 16 24 O -0.96 -10.11 16.98 -57.54 -0.98 -11.09 16 25 C 0.14 1.74 6.59 -3.07 -0.02 1.72 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.07 1.07 7.02 -51.93 -0.36 0.70 16 29 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.04 0.94 7.61 -51.93 -0.40 0.54 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 1.00 7.78 -51.93 -0.40 0.59 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.77 7.98 -51.93 -0.41 0.36 16 35 H 0.09 0.77 7.80 -51.93 -0.41 0.37 16 36 H 0.14 0.57 8.06 -51.92 -0.42 0.15 16 37 H 0.14 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.42 1.44 8.96 -34.47 -0.31 1.13 16 39 H 0.41 0.63 8.96 -34.46 -0.31 0.32 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -39.51 363.71 -10.21 -49.72 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.92 Total: -2.79 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.04 Total: -8.00 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.49 Total: -66.59 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -3.89 Total: -67.94 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 74.74 SS G_CDS: -1.30 Total: 73.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.51 -10.21 -49.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364116500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.591 kcal (2) G-P(sol) polarization free energy of solvation -39.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds