Wall clock time and date at job start Wed Apr 1 2020 00:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00349 * 2 1 4 4 C 1.50704 * 109.46738 * 275.00029 * 3 2 1 5 5 H 1.07997 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99771 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99785 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47197 * 90.00633 * 8 6 4 10 10 H 1.48504 * 109.47112 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47655 * 330.00298 * 8 6 4 12 12 S 1.65605 * 119.99527 * 179.97438 * 2 1 3 13 13 O 1.42113 * 106.39762 * 156.45986 * 12 2 1 14 14 O 1.42097 * 106.40390 * 23.54469 * 12 2 1 15 15 N 1.65598 * 107.22151 * 269.99541 * 12 2 1 16 16 C 1.46504 * 119.99398 * 65.00126 * 15 12 2 17 17 C 1.53006 * 109.46883 * 164.99895 * 16 15 12 18 18 C 1.53944 * 113.74436 * 271.68139 * 17 16 15 19 19 N 1.47580 * 86.11567 * 222.04728 * 18 17 16 20 20 S 1.65602 * 134.49272 * 204.63969 * 19 18 17 21 21 C 1.81407 * 104.44835 * 269.99615 * 20 19 18 22 22 O 1.42102 * 104.27383 * 26.06827 * 20 19 18 23 23 O 1.42100 * 104.27466 * 153.92683 * 20 19 18 24 24 C 1.47588 * 91.01473 * 24.63708 * 19 18 17 25 25 H 1.09004 * 109.47196 * 270.00332 * 1 2 3 26 26 H 1.08993 * 109.47211 * 30.00041 * 1 2 3 27 27 H 1.08999 * 109.47564 * 150.00638 * 1 2 3 28 28 H 1.09001 * 109.46992 * 34.99486 * 3 2 1 29 29 H 1.09000 * 109.47252 * 155.00094 * 3 2 1 30 30 H 0.97002 * 119.99727 * 179.97438 * 7 6 4 31 31 H 0.96998 * 120.00439 * 245.00363 * 15 12 2 32 32 H 1.09001 * 109.46891 * 45.00329 * 16 15 12 33 33 H 1.08993 * 109.47378 * 284.99701 * 16 15 12 34 34 H 1.09005 * 112.94084 * 43.41161 * 17 16 15 35 35 H 1.09012 * 113.76627 * 336.34587 * 18 17 16 36 36 H 1.08992 * 113.77624 * 107.74325 * 18 17 16 37 37 H 1.09007 * 109.46828 * 60.00110 * 21 20 19 38 38 H 1.08997 * 109.46574 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.47185 * 300.00186 * 21 20 19 40 40 H 1.09003 * 113.76693 * 221.05790 * 24 19 18 41 41 H 1.08998 * 113.76396 * 89.66514 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7655 -1.4155 5 1 1.9289 1.1933 -2.2332 6 6 2.9998 2.9507 -1.6665 7 7 3.5026 3.6473 -0.6707 8 14 3.1788 3.5662 -3.4210 9 1 2.0181 4.4263 -3.7647 10 1 4.4319 4.3536 -3.5440 11 1 3.2288 2.4082 -4.3493 12 16 2.2929 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5440 14 8 1.4112 -2.4068 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 1.3946 -2.1768 2.4411 17 6 1.8875 -2.8834 3.7055 18 6 1.9903 -4.4126 3.5609 19 7 1.4052 -4.4793 4.9141 20 16 1.4398 -5.5922 6.1399 21 6 0.0140 -6.6662 5.8166 22 8 2.6545 -6.3009 5.9356 23 8 1.2287 -4.8241 7.3167 24 6 0.7769 -3.1557 4.7362 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.6502 2.0043 0.5894 29 1 3.1858 1.1176 0.4343 30 1 3.9661 4.4809 -0.8473 31 1 3.4388 -1.8953 1.9407 32 1 0.7079 -2.8308 1.9036 33 1 0.8794 -1.2566 2.7166 34 1 2.7776 -2.4203 4.1315 35 1 1.3470 -4.8246 2.7833 36 1 3.0147 -4.7809 3.5066 37 1 0.1263 -7.1344 4.8386 38 1 -0.0409 -7.4380 6.5843 39 1 -0.8995 -6.0719 5.8322 40 1 0.8326 -2.5206 5.6203 41 1 -0.2228 -3.1986 4.3040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414250669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:14 Heat of formation + Delta-G solvation = -104.001785 kcal Electronic energy + Delta-G solvation = -26043.929609 eV Core-core repulsion = 22021.729122 eV Total energy + Delta-G solvation = -4022.200487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81842 -37.42765 -36.64635 -36.28915 -35.52752 -35.19067 -34.88530 -32.44823 -30.01895 -29.40737 -27.80077 -26.60215 -25.14255 -24.86351 -22.31460 -20.88974 -19.17553 -18.80854 -17.98226 -17.28298 -17.03568 -16.67519 -16.50354 -16.36175 -16.09872 -15.46967 -14.97661 -14.47888 -14.19328 -13.96804 -13.86716 -13.60534 -13.44555 -13.31850 -13.30173 -12.91770 -12.45773 -12.37541 -12.35942 -12.18297 -11.98826 -11.91073 -11.63482 -11.47131 -11.46206 -11.18359 -11.13492 -11.08728 -10.86707 -10.71461 -10.53007 -10.04655 -9.78693 -9.48758 -9.34818 -8.46074 -8.09754 -6.07975 -4.11944 -0.16519 1.19514 2.14022 3.30538 3.37301 3.41713 3.45077 3.50415 3.61131 3.98916 4.10254 4.21860 4.39765 4.41099 4.43743 4.50235 4.92862 5.03584 5.05996 5.13742 5.19890 5.26983 5.27997 5.31950 5.45429 5.52102 5.63108 5.80229 5.94444 6.00686 6.09157 6.26676 6.53232 7.05861 7.23815 7.39662 7.58722 7.89573 8.18705 8.90514 9.53436 11.00626 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.030223 B = 0.002338 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.234392 B =11975.294680 C =12125.951894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.782 3.218 13 O -0.963 6.963 14 O -0.999 6.999 15 N -1.134 6.134 16 C 0.127 3.873 17 C -0.122 4.122 18 C 0.125 3.875 19 N -1.038 6.038 20 S 2.628 3.372 21 C -0.678 4.678 22 O -0.952 6.952 23 O -0.953 6.953 24 C 0.130 3.870 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -16.817 13.404 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.947 6.947 14 O -0.982 6.982 15 N -0.893 5.893 16 C -0.001 4.001 17 C -0.144 4.144 18 C 0.000 4.000 19 N -0.877 5.877 20 S 2.723 3.277 21 C -0.827 4.827 22 O -0.943 6.943 23 O -0.944 6.944 24 C 0.004 3.996 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.247 0.753 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.515 -17.364 13.490 23.579 hybrid contribution -0.308 0.351 -0.748 0.882 sum -8.822 -17.012 12.742 23.014 Atomic orbital electron populations 1.21368 0.80248 1.03527 1.00112 1.57591 1.14249 1.23341 1.88707 1.19050 0.91025 0.78722 0.97652 1.21494 1.36146 1.06281 0.92965 0.92189 1.24935 0.95099 0.96535 0.97487 1.69917 1.37317 1.15304 1.30949 0.86510 0.77527 0.78827 0.84669 1.20633 1.21061 1.19713 1.01935 0.73373 0.72927 0.72849 1.93653 1.40647 1.84808 1.75558 1.93516 1.67653 1.60200 1.76872 1.56256 1.14472 1.86287 1.32322 1.21224 0.88455 0.99841 0.90550 1.23432 1.00269 0.95352 0.95394 1.22992 0.99803 0.95404 0.81803 1.60306 1.65601 1.31654 1.30138 1.04406 0.76205 0.74118 0.73018 1.30640 1.22658 1.17360 1.12036 1.93613 1.40978 1.74308 1.85416 1.93608 1.87191 1.68368 1.45219 1.22827 0.96733 0.81134 0.98879 0.94336 0.90413 0.91599 0.94711 0.94396 0.92673 0.75296 0.90135 0.91017 0.86889 0.89149 0.89168 0.85474 0.85621 0.85494 0.88974 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 10.68 59.85 0.64 2.10 16 2 N -1.00 -19.19 3.23 -123.06 -0.40 -19.58 16 3 C 0.26 6.19 5.08 -5.19 -0.03 6.16 16 4 C -0.53 -14.54 9.38 -34.44 -0.32 -14.87 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 S 2.78 50.43 6.10 -107.50 -0.66 49.78 16 13 O -0.96 -21.94 17.11 -57.17 -0.98 -22.92 16 14 O -1.00 -18.89 16.21 -57.17 -0.93 -19.82 16 15 N -1.13 -14.12 6.05 -10.61 -0.06 -14.19 16 16 C 0.13 1.16 6.10 -4.04 -0.02 1.13 16 17 C -0.12 -0.89 3.98 -89.70 -0.36 -1.24 16 18 C 0.13 0.89 8.47 -2.98 -0.03 0.87 16 19 N -1.04 -7.47 3.99 -118.76 -0.47 -7.95 16 20 S 2.63 20.74 6.57 -107.50 -0.71 20.04 16 21 C -0.68 -2.85 10.99 101.05 1.11 -1.74 16 22 O -0.95 -11.05 18.02 -57.54 -1.04 -12.09 16 23 O -0.95 -10.74 18.02 -57.54 -1.04 -11.78 16 24 C 0.13 0.78 8.48 -2.97 -0.03 0.76 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.07 0.96 7.02 -51.93 -0.36 0.60 16 28 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.41 4.52 8.64 -34.47 -0.30 4.22 16 32 H 0.08 0.69 7.44 -51.93 -0.39 0.30 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.09 0.52 7.89 -51.92 -0.41 0.11 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.33 8.10 -51.93 -0.42 -0.09 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -39.17 372.20 -10.12 -49.29 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.04 Total: -2.72 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.87 Total: -5.20 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.20 Total: -66.73 kcal Atomic # 8 Polarization: -62.63 SS G_CDS: -3.98 Total: -66.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 71.18 SS G_CDS: -1.36 Total: 69.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.17 -10.12 -49.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414250669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.711 kcal (2) G-P(sol) polarization free energy of solvation -39.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds