Wall clock time and date at job start Tue Mar 31 2020 23:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47456 * 2 1 4 4 C 1.50704 * 109.46636 * 119.99943 * 2 1 3 5 5 H 1.08006 * 119.99531 * 120.00054 * 4 2 1 6 6 C 1.37876 * 120.00024 * 299.99269 * 4 2 1 7 7 N 1.31513 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99770 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47234 * 90.00238 * 8 6 4 10 10 H 1.48503 * 109.47249 * 210.00333 * 8 6 4 11 11 H 1.48505 * 109.47214 * 330.00393 * 8 6 4 12 12 N 1.46897 * 109.47001 * 239.99479 * 2 1 3 13 13 C 1.46901 * 110.99766 * 85.00401 * 12 2 1 14 14 H 1.08999 * 109.47434 * 325.00362 * 13 12 2 15 15 C 1.53007 * 109.47091 * 84.99933 * 13 12 2 16 16 C 1.50702 * 109.47378 * 204.99857 * 13 12 2 17 17 O 1.21286 * 119.99714 * 0.02562 * 16 13 12 18 18 N 1.34780 * 120.00101 * 180.02562 * 16 13 12 19 19 C 1.39978 * 119.99707 * 174.47398 * 18 16 13 20 20 C 1.38851 * 120.07237 * 335.16846 * 19 18 16 21 21 C 1.38126 * 119.93972 * 179.74636 * 20 19 18 22 22 C 1.38301 * 120.08572 * 0.51150 * 21 20 19 23 23 N 1.48026 * 119.91976 * 179.74519 * 22 21 20 24 24 O 1.21797 * 119.99883 * 180.02562 * 23 22 21 25 25 O 1.21797 * 120.00029 * 0.02562 * 23 22 21 26 26 C 1.38257 * 120.15351 * 359.76732 * 22 21 20 27 27 C 1.38227 * 120.05532 * 359.97438 * 26 22 21 28 28 Cl 1.73600 * 120.04128 * 179.97438 * 27 26 22 29 29 H 1.09003 * 109.47189 * 300.00272 * 1 2 3 30 30 H 1.09002 * 109.47127 * 59.99490 * 1 2 3 31 31 H 1.08994 * 109.47456 * 180.02562 * 1 2 3 32 32 H 0.96992 * 119.99849 * 180.02562 * 7 6 4 33 33 H 1.00900 * 111.00137 * 321.05361 * 12 2 1 34 34 H 1.08997 * 109.47120 * 60.00123 * 15 13 12 35 35 H 1.08999 * 109.46971 * 180.02562 * 15 13 12 36 36 H 1.08993 * 109.47028 * 299.99664 * 15 13 12 37 37 H 0.96994 * 119.99887 * 354.47070 * 18 16 13 38 38 H 1.08001 * 120.03706 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.95373 * 180.25274 * 21 20 19 40 40 H 1.08002 * 119.96694 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4877 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3468 14 1 1.2577 0.9329 -2.2907 15 6 3.4112 0.9807 -2.3223 16 6 1.9786 -0.5678 -3.6259 17 8 1.8631 -1.7744 -3.5854 18 7 2.0141 0.0664 -4.8146 19 6 2.0343 -0.6739 -6.0024 20 6 2.5248 -1.9729 -6.0044 21 6 2.5386 -2.7028 -7.1769 22 6 2.0745 -2.1377 -8.3508 23 7 2.0962 -2.9213 -9.6065 24 8 1.6883 -2.4250 -10.6412 25 8 2.5221 -4.0624 -9.6049 26 6 1.5907 -0.8426 -8.3543 27 6 1.5690 -0.1085 -7.1833 28 17 0.9621 1.5179 -7.1882 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.7089 1.1614 3.4844 33 1 1.4494 -1.4980 -1.4100 34 1 4.2360 0.2704 -2.3785 35 1 3.4576 1.6600 -3.1735 36 1 3.4863 1.5523 -1.3973 37 1 2.0255 1.0357 -4.8470 38 1 2.8909 -2.4139 -5.0890 39 1 2.9162 -3.7146 -7.1779 40 1 1.2293 -0.4042 -9.2728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460314780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:26 Heat of formation + Delta-G solvation = -27.689801 kcal Electronic energy + Delta-G solvation = -26626.233500 eV Core-core repulsion = 22469.854491 eV Total energy + Delta-G solvation = -4156.379008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 8.88 seconds Orbital eigenvalues (eV) -43.33287 -42.19417 -40.24676 -37.93914 -37.83345 -37.71065 -36.41133 -34.93047 -32.76586 -32.42796 -31.54272 -28.78509 -27.63638 -27.24096 -25.32750 -24.75311 -23.46818 -22.12722 -21.25207 -20.61874 -19.89726 -19.45273 -18.80167 -18.66205 -17.94009 -17.16072 -16.78732 -16.63181 -16.56749 -16.21657 -15.56782 -15.30212 -14.98121 -14.83489 -14.61267 -14.35860 -13.72525 -13.45150 -13.26124 -13.18059 -13.02026 -12.93829 -12.82416 -12.75973 -12.63435 -12.56473 -12.35635 -12.33028 -12.31001 -12.20520 -12.09353 -11.92230 -11.14238 -10.96948 -10.47341 -10.43658 -9.82833 -9.09699 -8.10600 -6.19792 -1.41506 -0.43277 0.02948 0.15015 0.69684 1.17037 1.42962 1.43567 1.45782 1.55006 2.00046 2.44390 3.09873 3.19040 3.23866 3.35457 3.45344 3.50368 3.66568 3.99417 4.10212 4.21494 4.32719 4.43472 4.52494 4.67492 4.75894 4.77699 4.85647 4.87744 5.04924 5.09111 5.26385 5.31835 5.37691 5.69572 5.78749 5.88259 6.25618 6.43003 6.56835 6.62159 6.74444 6.92694 7.49638 8.94945 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.002325 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.685813 B =12042.539149 C =12942.177497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.220 3.780 3 H 0.021 0.979 4 C -0.513 4.513 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.674 5.674 13 C 0.067 3.933 14 H 0.078 0.922 15 C -0.130 4.130 16 C 0.529 3.471 17 O -0.521 6.521 18 N -0.653 5.653 19 C 0.224 3.776 20 C -0.130 4.130 21 C -0.015 4.015 22 C -0.071 4.071 23 N 0.036 4.964 24 O -0.170 6.170 25 O -0.179 6.179 26 C -0.012 4.012 27 C -0.077 4.077 28 Cl -0.019 7.019 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.337 0.663 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.432 0.568 38 H 0.170 0.830 39 H 0.175 0.825 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 2.662 -21.918 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.112 3.888 3 H 0.039 0.961 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.307 5.307 13 C -0.047 4.047 14 H 0.096 0.904 15 C -0.188 4.188 16 C 0.318 3.682 17 O -0.395 6.395 18 N -0.298 5.298 19 C 0.124 3.876 20 C -0.151 4.151 21 C -0.035 4.035 22 C -0.156 4.156 23 N 0.552 4.448 24 O -0.385 6.385 25 O -0.391 6.391 26 C -0.032 4.032 27 C -0.107 4.107 28 Cl 0.010 6.990 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.273 0.727 38 H 0.187 0.813 39 H 0.192 0.808 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.581 2.545 -20.868 21.180 hybrid contribution -0.924 0.084 0.543 1.075 sum 1.657 2.629 -20.325 20.561 Atomic orbital electron populations 1.22306 1.00270 0.99091 1.00414 1.18999 0.89691 0.93403 0.86752 0.96111 1.21393 1.30375 1.12430 0.91025 0.93031 1.25609 0.95483 0.95883 1.01586 1.69969 1.37850 1.24112 1.23992 0.85600 0.78028 0.78998 0.79227 1.20221 1.21063 1.19825 1.60787 1.58854 1.08822 1.02261 1.21615 1.01144 0.94804 0.87111 0.90413 1.21758 0.94253 0.99523 1.03259 1.21219 0.73469 0.88278 0.85186 1.90668 1.46572 1.15419 1.86876 1.43731 1.71306 1.11864 1.02922 1.18012 0.91996 0.92282 0.85315 1.21450 1.01101 0.92905 0.99677 1.21185 0.92063 1.01836 0.88434 1.20920 1.15727 0.94183 0.84766 1.43652 0.97499 1.00894 1.02743 1.94529 1.49052 1.73396 1.21520 1.94556 1.48642 1.03089 1.92806 1.20743 0.93045 0.90160 0.99280 1.20230 1.06936 0.90632 0.92946 1.98429 1.85776 1.16336 1.98486 0.91614 0.95249 0.95574 0.92978 0.84329 0.92111 0.88968 0.92266 0.72671 0.81298 0.80797 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.26 8.92 71.98 0.64 -6.62 16 2 C 0.22 10.20 2.38 44.17 0.11 10.31 16 3 H 0.02 1.04 7.11 -2.39 -0.02 1.02 16 4 C -0.51 -27.31 8.84 25.60 0.23 -27.08 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -50.50 11.32 21.45 0.24 -50.25 16 8 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.67 -26.14 5.92 -477.15 -2.82 -28.96 16 13 C 0.07 1.88 2.84 44.17 0.13 2.01 16 14 H 0.08 2.10 7.11 -2.39 -0.02 2.09 16 15 C -0.13 -3.13 9.30 71.98 0.67 -2.46 16 16 C 0.53 13.04 6.99 87.66 0.61 13.65 16 17 O -0.52 -15.84 12.81 -3.05 -0.04 -15.88 16 18 N -0.65 -11.17 5.05 -303.42 -1.53 -12.70 16 19 C 0.22 3.82 6.43 38.16 0.25 4.07 16 20 C -0.13 -2.39 8.72 22.39 0.20 -2.19 16 21 C -0.02 -0.26 9.55 22.26 0.21 -0.04 16 22 C -0.07 -1.26 6.85 36.39 0.25 -1.01 16 23 N 0.04 0.80 4.45 -46.41 -0.21 0.60 16 24 O -0.17 -3.90 18.44 18.89 0.35 -3.55 16 25 O -0.18 -4.30 18.44 18.89 0.35 -3.95 16 26 C -0.01 -0.18 9.33 22.27 0.21 0.03 16 27 C -0.08 -1.11 6.34 22.44 0.14 -0.96 16 28 Cl -0.02 -0.23 27.78 -2.72 -0.08 -0.31 16 29 H 0.07 3.33 6.07 -2.39 -0.01 3.32 16 30 H 0.03 1.12 7.43 -2.39 -0.02 1.10 16 31 H 0.03 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 33 H 0.34 13.52 7.19 -89.69 -0.64 12.87 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.39 7.70 -2.39 -0.02 1.37 16 36 H 0.06 1.70 7.43 -2.39 -0.02 1.68 16 37 H 0.43 5.21 7.35 -92.71 -0.68 4.53 16 38 H 0.17 3.60 5.79 -2.91 -0.02 3.58 16 39 H 0.17 2.45 7.60 -2.91 -0.02 2.43 16 40 H 0.18 2.04 7.60 -2.91 -0.02 2.02 16 Total: -1.00 -61.77 357.63 2.17 -59.60 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.20 Total: 19.74 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 4.08 Total: -9.17 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -4.32 Total: -91.32 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.66 Total: -23.38 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -61.77 2.17 -59.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460314780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.913 kcal (2) G-P(sol) polarization free energy of solvation -61.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.88 seconds